data_1XCS
#
_entry.id 1XCS
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.386
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1XCS pdb_00001xcs 10.2210/pdb1xcs/pdb
NDB DD0064 ? ?
RCSB RCSB030212 ? ?
WWPDB D_1000030212 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2005-07-19
2 'Structure model' 1 1 2008-04-30
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2011-11-16
5 'Structure model' 1 4 2024-02-14
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Atomic model'
4 5 'Structure model' 'Data collection'
5 5 'Structure model' 'Database references'
6 5 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 5 'Structure model' chem_comp_atom
2 5 'Structure model' chem_comp_bond
3 5 'Structure model' database_2
4 5 'Structure model' diffrn_source
5 5 'Structure model' pdbx_struct_conn_angle
6 5 'Structure model' struct_conn
7 5 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 5 'Structure model' '_database_2.pdbx_DOI'
2 5 'Structure model' '_database_2.pdbx_database_accession'
3 5 'Structure model' '_diffrn_source.pdbx_synchrotron_site'
4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'
5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'
6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id'
7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id'
8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id'
9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id'
10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry'
11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id'
12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id'
13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id'
14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id'
15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id'
16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'
17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'
18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id'
19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id'
20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id'
21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id'
22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry'
23 5 'Structure model' '_pdbx_struct_conn_angle.value'
24 5 'Structure model' '_struct_conn.pdbx_dist_value'
25 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
26 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
27 5 'Structure model' '_struct_conn.ptnr1_label_asym_id'
28 5 'Structure model' '_struct_conn.ptnr1_label_atom_id'
29 5 'Structure model' '_struct_conn.ptnr1_label_comp_id'
30 5 'Structure model' '_struct_conn.ptnr1_label_seq_id'
31 5 'Structure model' '_struct_conn.ptnr1_symmetry'
32 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
33 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
34 5 'Structure model' '_struct_conn.ptnr2_label_asym_id'
35 5 'Structure model' '_struct_conn.ptnr2_label_atom_id'
36 5 'Structure model' '_struct_conn.ptnr2_label_comp_id'
37 5 'Structure model' '_struct_conn.ptnr2_label_seq_id'
38 5 'Structure model' '_struct_conn.ptnr2_symmetry'
39 5 'Structure model' '_struct_site.pdbx_auth_asym_id'
40 5 'Structure model' '_struct_site.pdbx_auth_comp_id'
41 5 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1XCS
_pdbx_database_status.recvd_initial_deposition_date 2004-09-03
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Valls, N.' 1
'Steiner, R.A.' 2
'Wright, G.' 3
'Murshudov, G.N.' 4
'Subirana, J.A.' 5
#
_citation.id primary
_citation.title 'Variable role of ions in two drug intercalation complexes of DNA'
_citation.journal_abbrev J.Biol.Inorg.Chem.
_citation.journal_volume 10
_citation.page_first 476
_citation.page_last 482
_citation.year 2005
_citation.journal_id_ASTM JJBCFA
_citation.country GW
_citation.journal_id_ISSN 0949-8257
_citation.journal_id_CSD 2154
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 15926069
_citation.pdbx_database_id_DOI 10.1007/s00775-005-0655-3
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Valls, N.' 1 ?
primary 'Steiner, R.A.' 2 ?
primary 'Wright, G.' 3 ?
primary 'Murshudov, G.N.' 4 ?
primary 'Subirana, J.A.' 5 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn "5'-D(*CP*GP*TP*AP*CP*G)-3'" 1809.217 2 ? ? ? ?
2 non-polymer syn 'COBALT (II) ION' 58.933 2 ? ? ? ?
3 non-polymer syn
;9-[(5-(ACETYLAMINO)-6-{[(1S,4R)-8-AMINO-4-[((2R)-6-AMINO-2-{2-[(1S)-5-AMINO-1-FORMYLPENTYL]HYDRAZINO}HEXANOYL)AMINO]-1-(4-AMINOBUTYL)-2,3-DIOXOOCTYL]AMINO}-6-OXOHEXYL)AMINO]-6-CHLORO-2-METHOXYACRIDINIUM
;
927.594 1 ? ? ? ?
4 non-polymer syn 'BARIUM ION' 137.327 1 ? ? ? ?
5 water nat water 18.015 44 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(DA)(DC)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CGTACG
_entity_poly.pdbx_strand_id A,B
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'COBALT (II) ION' CO
3
;9-[(5-(ACETYLAMINO)-6-{[(1S,4R)-8-AMINO-4-[((2R)-6-AMINO-2-{2-[(1S)-5-AMINO-1-FORMYLPENTYL]HYDRAZINO}HEXANOYL)AMINO]-1-(4-AMINOBUTYL)-2,3-DIOXOOCTYL]AMINO}-6-OXOHEXYL)AMINO]-6-CHLORO-2-METHOXYACRIDINIUM
;
A4L
4 'BARIUM ION' BA
5 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DG n
1 3 DT n
1 4 DA n
1 5 DC n
1 6 DG n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
A4L non-polymer .
;9-[(5-(ACETYLAMINO)-6-{[(1S,4R)-8-AMINO-4-[((2R)-6-AMINO-2-{2-[(1S)-5-AMINO-1-FORMYLPENTYL]HYDRAZINO}HEXANOYL)AMINO]-1-(4-AMINOBUTYL)-2,3-DIOXOOCTYL]AMINO}-6-OXOHEXYL)AMINO]-6-CHLORO-2-METHOXYACRIDINIUM
;
? 'C46 H73 Cl N11 O7 1' 927.594
BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327
CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC C A . n
A 1 2 DG 2 2 2 DG G A . n
A 1 3 DT 3 3 3 DT T A . n
A 1 4 DA 4 4 4 DA A A . n
A 1 5 DC 5 5 5 DC C A . n
A 1 6 DG 6 6 6 DG G A . n
B 1 1 DC 1 7 7 DC C B . n
B 1 2 DG 2 8 8 DG G B . n
B 1 3 DT 3 9 9 DT T B . n
B 1 4 DA 4 10 10 DA A B . n
B 1 5 DC 5 11 11 DC C B . n
B 1 6 DG 6 12 12 DG G B . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CO 1 64 14 CO CO A .
D 3 A4L 1 71 1 A4L A4L A .
E 2 CO 1 63 13 CO CO B .
F 4 BA 1 65 15 BA BA B .
G 5 HOH 1 72 3 HOH HOH A .
G 5 HOH 2 73 6 HOH HOH A .
G 5 HOH 3 74 8 HOH HOH A .
G 5 HOH 4 75 14 HOH HOH A .
G 5 HOH 5 76 15 HOH HOH A .
G 5 HOH 6 77 18 HOH HOH A .
G 5 HOH 7 78 19 HOH HOH A .
G 5 HOH 8 79 20 HOH HOH A .
G 5 HOH 9 80 22 HOH HOH A .
G 5 HOH 10 81 23 HOH HOH A .
G 5 HOH 11 82 24 HOH HOH A .
G 5 HOH 12 83 27 HOH HOH A .
G 5 HOH 13 84 35 HOH HOH A .
G 5 HOH 14 85 36 HOH HOH A .
G 5 HOH 15 86 42 HOH HOH A .
G 5 HOH 16 87 45 HOH HOH A .
G 5 HOH 17 88 50 HOH HOH A .
G 5 HOH 18 89 54 HOH HOH A .
G 5 HOH 19 90 58 HOH HOH A .
H 5 HOH 1 66 1 HOH HOH B .
H 5 HOH 2 67 2 HOH HOH B .
H 5 HOH 3 68 4 HOH HOH B .
H 5 HOH 4 69 5 HOH HOH B .
H 5 HOH 5 70 7 HOH HOH B .
H 5 HOH 6 71 9 HOH HOH B .
H 5 HOH 7 72 10 HOH HOH B .
H 5 HOH 8 73 11 HOH HOH B .
H 5 HOH 9 74 12 HOH HOH B .
H 5 HOH 10 75 13 HOH HOH B .
H 5 HOH 11 76 17 HOH HOH B .
H 5 HOH 12 77 21 HOH HOH B .
H 5 HOH 13 78 25 HOH HOH B .
H 5 HOH 14 79 28 HOH HOH B .
H 5 HOH 15 80 29 HOH HOH B .
H 5 HOH 16 81 30 HOH HOH B .
H 5 HOH 17 82 31 HOH HOH B .
H 5 HOH 18 83 33 HOH HOH B .
H 5 HOH 19 84 34 HOH HOH B .
H 5 HOH 20 85 37 HOH HOH B .
H 5 HOH 21 86 38 HOH HOH B .
H 5 HOH 22 87 44 HOH HOH B .
H 5 HOH 23 88 46 HOH HOH B .
H 5 HOH 24 89 51 HOH HOH B .
H 5 HOH 25 90 56 HOH HOH B .
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 Y 1 A DC 1 ? "O5'" ? A DC 1 "O5'"
2 1 Y 1 A DC 1 ? "C5'" ? A DC 1 "C5'"
3 1 Y 1 A DC 1 ? "C4'" ? A DC 1 "C4'"
4 1 Y 1 A DC 1 ? "O4'" ? A DC 1 "O4'"
5 1 Y 1 A DC 1 ? "C3'" ? A DC 1 "C3'"
6 1 Y 1 A DC 1 ? "C2'" ? A DC 1 "C2'"
7 1 Y 1 A DC 1 ? "C1'" ? A DC 1 "C1'"
8 1 Y 1 A DC 1 ? N1 ? A DC 1 N1
9 1 Y 1 A DC 1 ? C2 ? A DC 1 C2
10 1 Y 1 A DC 1 ? O2 ? A DC 1 O2
11 1 Y 1 A DC 1 ? N3 ? A DC 1 N3
12 1 Y 1 A DC 1 ? C4 ? A DC 1 C4
13 1 Y 1 A DC 1 ? N4 ? A DC 1 N4
14 1 Y 1 A DC 1 ? C5 ? A DC 1 C5
15 1 Y 1 A DC 1 ? C6 ? A DC 1 C6
16 1 N 1 A A4L 71 ? N1 ? D A4L 1 N1
17 1 N 1 A A4L 71 ? C7 ? D A4L 1 C7
18 1 N 1 A A4L 71 ? C15 ? D A4L 1 C15
19 1 N 1 A A4L 71 ? C16 ? D A4L 1 C16
20 1 N 1 A A4L 71 ? C18 ? D A4L 1 C18
21 1 N 1 A A4L 71 ? C25 ? D A4L 1 C25
22 1 N 1 A A4L 71 ? N2 ? D A4L 1 N2
23 1 N 1 A A4L 71 ? N3 ? D A4L 1 N3
24 1 N 1 A A4L 71 ? C27 ? D A4L 1 C27
25 1 N 1 A A4L 71 ? C29 ? D A4L 1 C29
26 1 N 1 A A4L 71 ? O1 ? D A4L 1 O1
27 1 N 1 A A4L 71 ? N4 ? D A4L 1 N4
28 1 N 1 A A4L 71 ? C30 ? D A4L 1 C30
29 1 N 1 A A4L 71 ? C31 ? D A4L 1 C31
30 1 N 1 A A4L 71 ? O2 ? D A4L 1 O2
31 1 N 1 A A4L 71 ? C32 ? D A4L 1 C32
32 1 N 1 A A4L 71 ? O3 ? D A4L 1 O3
33 1 N 1 A A4L 71 ? C33 ? D A4L 1 C33
34 1 N 1 A A4L 71 ? N5 ? D A4L 1 N5
35 1 N 1 A A4L 71 ? O4 ? D A4L 1 O4
36 1 N 1 A A4L 71 ? C34 ? D A4L 1 C34
37 1 N 1 A A4L 71 ? C35 ? D A4L 1 C35
38 1 N 1 A A4L 71 ? C36 ? D A4L 1 C36
39 1 N 1 A A4L 71 ? C37 ? D A4L 1 C37
40 1 N 1 A A4L 71 ? N6 ? D A4L 1 N6
41 1 N 1 A A4L 71 ? C38 ? D A4L 1 C38
42 1 N 1 A A4L 71 ? C39 ? D A4L 1 C39
43 1 N 1 A A4L 71 ? C40 ? D A4L 1 C40
44 1 N 1 A A4L 71 ? C41 ? D A4L 1 C41
45 1 N 1 A A4L 71 ? N8 ? D A4L 1 N8
46 1 N 1 A A4L 71 ? C42 ? D A4L 1 C42
47 1 N 1 A A4L 71 ? C43 ? D A4L 1 C43
48 1 N 1 A A4L 71 ? C44 ? D A4L 1 C44
49 1 N 1 A A4L 71 ? C45 ? D A4L 1 C45
50 1 N 1 A A4L 71 ? N9 ? D A4L 1 N9
51 1 N 1 A A4L 71 ? C46 ? D A4L 1 C46
52 1 N 1 A A4L 71 ? O5 ? D A4L 1 O5
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
REFMAC refinement 5.1.24 ? 1
DENZO 'data reduction' . ? 2
SCALEPACK 'data scaling' . ? 3
#
_cell.entry_id 1XCS
_cell.length_a 28.659
_cell.length_b 53.473
_cell.length_c 40.691
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 16
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1XCS
_symmetry.space_group_name_H-M 'C 2 2 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 21
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 1XCS
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.15
_exptl_crystal.density_percent_sol 42.90
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 7
_exptl_crystal_grow.pdbx_details
'MPD, barium chloride, cobalt chloride, drug, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 293K'
_exptl_crystal_grow.pdbx_pH_range .
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 MPD ? ? ?
1 2 1 'barium chloride' ? ? ?
1 3 1 'cobalt chloride' ? ? ?
1 4 1 drug ? ? ?
1 5 2 MPD ? ? ?
1 6 2 'barium chloride' ? ? ?
1 7 2 'cobalt chloride' ? ? ?
1 8 2 drug ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 120
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.80000
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X11'
_diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG'
_diffrn_source.pdbx_synchrotron_beamline X11
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 0.80000
#
_reflns.entry_id 1XCS
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.d_resolution_high 1.4
_reflns.d_resolution_low 40.82
_reflns.number_all ?
_reflns.number_obs 6152
_reflns.percent_possible_obs ?
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value 0.082
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.R_free_details ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_reflns_shell.d_res_high 1.40
_reflns_shell.d_res_low 1.45
_reflns_shell.percent_possible_all ?
_reflns_shell.Rmerge_I_obs ?
_reflns_shell.pdbx_Rsym_value 0.117
_reflns_shell.meanI_over_sigI_obs ?
_reflns_shell.pdbx_redundancy ?
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_ordinal 1
#
_refine.entry_id 1XCS
_refine.ls_number_reflns_obs 5550
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 40.82
_refine.ls_d_res_high 1.40
_refine.ls_percent_reflns_obs 96.09
_refine.ls_R_factor_obs 0.19882
_refine.ls_R_factor_all 0.202
_refine.ls_R_factor_R_work 0.19348
_refine.ls_R_factor_R_free 0.25091
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 9.8
_refine.ls_number_reflns_R_free 602
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.962
_refine.correlation_coeff_Fo_to_Fc_free 0.940
_refine.B_iso_mean 21.894
_refine.aniso_B[1][1] 1.02
_refine.aniso_B[2][2] -0.40
_refine.aniso_B[3][3] -0.63
_refine.aniso_B[1][2] 0.00
_refine.aniso_B[1][3] 0.00
_refine.aniso_B[2][3] 0.00
_refine.solvent_model_details 'BABINET MODEL WITH MASK'
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.40
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS'
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R 0.092
_refine.pdbx_overall_ESU_R_Free 0.086
_refine.overall_SU_ML 0.046
_refine.overall_SU_B 1.112
_refine.ls_redundancy_reflns_obs ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 225
_refine_hist.pdbx_number_atoms_ligand 31
_refine_hist.number_atoms_solvent 44
_refine_hist.number_atoms_total 300
_refine_hist.d_res_high 1.40
_refine_hist.d_res_low 40.82
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 0.010 0.021 ? 281 'X-RAY DIFFRACTION' ?
r_bond_other_d 0.004 0.020 ? 131 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 2.147 3.000 ? 426 'X-RAY DIFFRACTION' ?
r_angle_other_deg 1.611 3.000 ? 322 'X-RAY DIFFRACTION' ?
r_chiral_restr 0.093 0.200 ? 34 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 0.014 0.020 ? 144 'X-RAY DIFFRACTION' ?
r_gen_planes_other 0.012 0.020 ? 12 'X-RAY DIFFRACTION' ?
r_nbd_refined 0.198 0.200 ? 82 'X-RAY DIFFRACTION' ?
r_nbd_other 0.257 0.200 ? 185 'X-RAY DIFFRACTION' ?
r_nbtor_other 0.129 0.200 ? 124 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_refined 0.153 0.200 ? 30 'X-RAY DIFFRACTION' ?
r_metal_ion_refined 0.215 0.200 ? 1 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined 0.169 0.200 ? 36 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_other 0.266 0.200 ? 41 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined 0.679 0.200 ? 9 'X-RAY DIFFRACTION' ?
r_scbond_it 1.994 3.000 ? 281 'X-RAY DIFFRACTION' ?
r_scangle_it 2.875 4.500 ? 426 'X-RAY DIFFRACTION' ?
r_rigid_bond_restr 1.221 2.000 ? 281 'X-RAY DIFFRACTION' ?
r_sphericity_free 3.403 2.000 ? 47 'X-RAY DIFFRACTION' ?
r_sphericity_bonded 3.127 2.000 ? 253 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 1.403
_refine_ls_shell.d_res_low 1.440
_refine_ls_shell.number_reflns_R_work 395
_refine_ls_shell.R_factor_R_work 0.168
_refine_ls_shell.percent_reflns_obs ?
_refine_ls_shell.R_factor_R_free 0.206
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 48
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
#
_database_PDB_matrix.entry_id 1XCS
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1XCS
_struct.title 'structure of oligonucleotide/drug complex'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1XCS
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'DRUG-DNA COMPLEX, DOUBLE HELIX, CO2+, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 2 ?
D N N 3 ?
E N N 2 ?
F N N 4 ?
G N N 5 ?
H N N 5 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 1XCS
_struct_ref.pdbx_db_accession 1XCS
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 1XCS A 1 ? 6 ? 1XCS 1 ? 6 ? 1 6
2 1 1XCS B 1 ? 6 ? 1XCS 7 ? 12 ? 7 12
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
_struct_biol.pdbx_parent_biol_id ?
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
metalc1 metalc ? ? A DG 2 N7 ? ? ? 1_555 C CO . CO ? ? A DG 2 A CO 64 1_555 ? ? ? ? ? ? ? 2.153 ? ?
metalc2 metalc ? ? C CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 64 A HOH 72 1_555 ? ? ? ? ? ? ? 2.183 ? ?
metalc3 metalc ? ? C CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 64 A HOH 78 1_555 ? ? ? ? ? ? ? 2.158 ? ?
metalc4 metalc ? ? C CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 64 A HOH 79 1_555 ? ? ? ? ? ? ? 2.137 ? ?
metalc5 metalc ? ? C CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 64 A HOH 89 1_555 ? ? ? ? ? ? ? 1.902 ? ?
metalc6 metalc ? ? C CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 64 A HOH 90 1_555 ? ? ? ? ? ? ? 1.985 ? ?
metalc7 metalc ? ? B DG 2 OP2 ? ? ? 1_555 F BA . BA ? ? B DG 8 B BA 65 1_555 ? ? ? ? ? ? ? 2.768 ? ?
metalc8 metalc ? ? B DG 2 OP2 ? ? ? 3_656 F BA . BA ? ? B DG 8 B BA 65 1_555 ? ? ? ? ? ? ? 2.784 ? ?
metalc9 metalc ? ? B DG 2 OP2 ? ? ? 4_556 F BA . BA ? ? B DG 8 B BA 65 1_555 ? ? ? ? ? ? ? 2.776 ? ?
metalc10 metalc ? ? B DG 2 OP2 ? ? ? 2_655 F BA . BA ? ? B DG 8 B BA 65 1_555 ? ? ? ? ? ? ? 2.791 ? ?
metalc11 metalc ? ? B DG 6 N7 ? ? ? 1_555 E CO . CO ? ? B DG 12 B CO 63 1_555 ? ? ? ? ? ? ? 2.140 ? ?
metalc12 metalc ? ? B DG 6 N7 ? ? ? 3_755 E CO . CO ? ? B DG 12 B CO 63 1_555 ? ? ? ? ? ? ? 2.130 ? ?
metalc13 metalc ? ? E CO . CO ? ? ? 1_555 H HOH . O ? ? B CO 63 B HOH 66 1_555 ? ? ? ? ? ? ? 2.145 ? ?
metalc14 metalc ? ? E CO . CO ? ? ? 1_555 H HOH . O ? ? B CO 63 B HOH 66 3_755 ? ? ? ? ? ? ? 2.132 ? ?
metalc15 metalc ? ? E CO . CO ? ? ? 1_555 H HOH . O ? ? B CO 63 B HOH 67 1_555 ? ? ? ? ? ? ? 2.050 ? ?
metalc16 metalc ? ? E CO . CO ? ? ? 1_555 H HOH . O ? ? B CO 63 B HOH 67 3_755 ? ? ? ? ? ? ? 2.036 ? ?
hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 3 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 3 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
metalc ? ?
hydrog ? ?
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 N7 ? A DG 2 ? A DG 2 ? 1_555 CO ? C CO . ? A CO 64 ? 1_555 O ? G HOH . ? A HOH 72 ? 1_555 91.1 ?
2 N7 ? A DG 2 ? A DG 2 ? 1_555 CO ? C CO . ? A CO 64 ? 1_555 O ? G HOH . ? A HOH 78 ? 1_555 90.1 ?
3 O ? G HOH . ? A HOH 72 ? 1_555 CO ? C CO . ? A CO 64 ? 1_555 O ? G HOH . ? A HOH 78 ? 1_555 90.1 ?
4 N7 ? A DG 2 ? A DG 2 ? 1_555 CO ? C CO . ? A CO 64 ? 1_555 O ? G HOH . ? A HOH 79 ? 1_555 90.4 ?
5 O ? G HOH . ? A HOH 72 ? 1_555 CO ? C CO . ? A CO 64 ? 1_555 O ? G HOH . ? A HOH 79 ? 1_555 90.9 ?
6 O ? G HOH . ? A HOH 78 ? 1_555 CO ? C CO . ? A CO 64 ? 1_555 O ? G HOH . ? A HOH 79 ? 1_555 178.9 ?
7 N7 ? A DG 2 ? A DG 2 ? 1_555 CO ? C CO . ? A CO 64 ? 1_555 O ? G HOH . ? A HOH 89 ? 1_555 95.9 ?
8 O ? G HOH . ? A HOH 72 ? 1_555 CO ? C CO . ? A CO 64 ? 1_555 O ? G HOH . ? A HOH 89 ? 1_555 171.6 ?
9 O ? G HOH . ? A HOH 78 ? 1_555 CO ? C CO . ? A CO 64 ? 1_555 O ? G HOH . ? A HOH 89 ? 1_555 85.3 ?
10 O ? G HOH . ? A HOH 79 ? 1_555 CO ? C CO . ? A CO 64 ? 1_555 O ? G HOH . ? A HOH 89 ? 1_555 93.7 ?
11 N7 ? A DG 2 ? A DG 2 ? 1_555 CO ? C CO . ? A CO 64 ? 1_555 O ? G HOH . ? A HOH 90 ? 1_555 176.7 ?
12 O ? G HOH . ? A HOH 72 ? 1_555 CO ? C CO . ? A CO 64 ? 1_555 O ? G HOH . ? A HOH 90 ? 1_555 90.7 ?
13 O ? G HOH . ? A HOH 78 ? 1_555 CO ? C CO . ? A CO 64 ? 1_555 O ? G HOH . ? A HOH 90 ? 1_555 92.7 ?
14 O ? G HOH . ? A HOH 79 ? 1_555 CO ? C CO . ? A CO 64 ? 1_555 O ? G HOH . ? A HOH 90 ? 1_555 86.7 ?
15 O ? G HOH . ? A HOH 89 ? 1_555 CO ? C CO . ? A CO 64 ? 1_555 O ? G HOH . ? A HOH 90 ? 1_555 82.6 ?
16 OP2 ? B DG 2 ? B DG 8 ? 1_555 BA ? F BA . ? B BA 65 ? 1_555 OP2 ? B DG 2 ? B DG 8 ? 3_656 109.7 ?
17 OP2 ? B DG 2 ? B DG 8 ? 1_555 BA ? F BA . ? B BA 65 ? 1_555 OP2 ? B DG 2 ? B DG 8 ? 4_556 70.8 ?
18 OP2 ? B DG 2 ? B DG 8 ? 3_656 BA ? F BA . ? B BA 65 ? 1_555 OP2 ? B DG 2 ? B DG 8 ? 4_556 176.7 ?
19 OP2 ? B DG 2 ? B DG 8 ? 1_555 BA ? F BA . ? B BA 65 ? 1_555 OP2 ? B DG 2 ? B DG 8 ? 2_655 177.4 ?
20 OP2 ? B DG 2 ? B DG 8 ? 3_656 BA ? F BA . ? B BA 65 ? 1_555 OP2 ? B DG 2 ? B DG 8 ? 2_655 70.4 ?
21 OP2 ? B DG 2 ? B DG 8 ? 4_556 BA ? F BA . ? B BA 65 ? 1_555 OP2 ? B DG 2 ? B DG 8 ? 2_655 109.2 ?
22 N7 ? B DG 6 ? B DG 12 ? 1_555 CO ? E CO . ? B CO 63 ? 1_555 N7 ? B DG 6 ? B DG 12 ? 3_755 177.1 ?
23 N7 ? B DG 6 ? B DG 12 ? 1_555 CO ? E CO . ? B CO 63 ? 1_555 O ? H HOH . ? B HOH 66 ? 1_555 92.2 ?
24 N7 ? B DG 6 ? B DG 12 ? 3_755 CO ? E CO . ? B CO 63 ? 1_555 O ? H HOH . ? B HOH 66 ? 1_555 89.5 ?
25 N7 ? B DG 6 ? B DG 12 ? 1_555 CO ? E CO . ? B CO 63 ? 1_555 O ? H HOH . ? B HOH 66 ? 3_755 89.6 ?
26 N7 ? B DG 6 ? B DG 12 ? 3_755 CO ? E CO . ? B CO 63 ? 1_555 O ? H HOH . ? B HOH 66 ? 3_755 92.8 ?
27 O ? H HOH . ? B HOH 66 ? 1_555 CO ? E CO . ? B CO 63 ? 1_555 O ? H HOH . ? B HOH 66 ? 3_755 88.4 ?
28 N7 ? B DG 6 ? B DG 12 ? 1_555 CO ? E CO . ? B CO 63 ? 1_555 O ? H HOH . ? B HOH 67 ? 1_555 89.6 ?
29 N7 ? B DG 6 ? B DG 12 ? 3_755 CO ? E CO . ? B CO 63 ? 1_555 O ? H HOH . ? B HOH 67 ? 1_555 88.1 ?
30 O ? H HOH . ? B HOH 66 ? 1_555 CO ? E CO . ? B CO 63 ? 1_555 O ? H HOH . ? B HOH 67 ? 1_555 86.8 ?
31 O ? H HOH . ? B HOH 66 ? 3_755 CO ? E CO . ? B CO 63 ? 1_555 O ? H HOH . ? B HOH 67 ? 1_555 175.1 ?
32 N7 ? B DG 6 ? B DG 12 ? 1_555 CO ? E CO . ? B CO 63 ? 1_555 O ? H HOH . ? B HOH 67 ? 3_755 88.2 ?
33 N7 ? B DG 6 ? B DG 12 ? 3_755 CO ? E CO . ? B CO 63 ? 1_555 O ? H HOH . ? B HOH 67 ? 3_755 90.3 ?
34 O ? H HOH . ? B HOH 66 ? 1_555 CO ? E CO . ? B CO 63 ? 1_555 O ? H HOH . ? B HOH 67 ? 3_755 175.8 ?
35 O ? H HOH . ? B HOH 66 ? 3_755 CO ? E CO . ? B CO 63 ? 1_555 O ? H HOH . ? B HOH 67 ? 3_755 87.5 ?
36 O ? H HOH . ? B HOH 67 ? 1_555 CO ? E CO . ? B CO 63 ? 1_555 O ? H HOH . ? B HOH 67 ? 3_755 97.4 ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software B CO 63 ? 6 'BINDING SITE FOR RESIDUE CO B 63'
AC2 Software A CO 64 ? 6 'BINDING SITE FOR RESIDUE CO A 64'
AC3 Software B BA 65 ? 4 'BINDING SITE FOR RESIDUE BA B 65'
AC4 Software A A4L 71 ? 8 'BINDING SITE FOR RESIDUE A4L A 71'
1 ? ? ? ? ? ? ?
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 6 DG B 6 ? DG B 12 . ? 1_555 ?
2 AC1 6 DG B 6 ? DG B 12 . ? 3_755 ?
3 AC1 6 HOH H . ? HOH B 66 . ? 1_555 ?
4 AC1 6 HOH H . ? HOH B 66 . ? 3_755 ?
5 AC1 6 HOH H . ? HOH B 67 . ? 3_755 ?
6 AC1 6 HOH H . ? HOH B 67 . ? 1_555 ?
7 AC2 6 DG A 2 ? DG A 2 . ? 1_555 ?
8 AC2 6 HOH G . ? HOH A 72 . ? 1_555 ?
9 AC2 6 HOH G . ? HOH A 78 . ? 1_555 ?
10 AC2 6 HOH G . ? HOH A 79 . ? 1_555 ?
11 AC2 6 HOH G . ? HOH A 89 . ? 1_555 ?
12 AC2 6 HOH G . ? HOH A 90 . ? 1_555 ?
13 AC3 4 DG B 2 ? DG B 8 . ? 2_655 ?
14 AC3 4 DG B 2 ? DG B 8 . ? 3_656 ?
15 AC3 4 DG B 2 ? DG B 8 . ? 4_556 ?
16 AC3 4 DG B 2 ? DG B 8 . ? 1_555 ?
17 AC4 8 DT A 3 ? DT A 3 . ? 6_555 ?
18 AC4 8 DC A 5 ? DC A 5 . ? 1_555 ?
19 AC4 8 DC A 5 ? DC A 5 . ? 2_655 ?
20 AC4 8 DG A 6 ? DG A 6 . ? 1_555 ?
21 AC4 8 DG A 6 ? DG A 6 . ? 2_655 ?
22 AC4 8 DC B 1 ? DC B 7 . ? 3_656 ?
23 AC4 8 DG B 2 ? DG B 8 . ? 1_555 ?
24 AC4 8 DG B 2 ? DG B 8 . ? 2_655 ?
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O5'" A DC 5 ? ? "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 104.46 109.40 -4.94 0.80 N
2 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.59 108.30 4.29 0.30 N
#
_struct_site_keywords.site_id 1
_struct_site_keywords.text INTERCALATION
#
loop_
_pdbx_struct_special_symmetry.id
_pdbx_struct_special_symmetry.PDB_model_num
_pdbx_struct_special_symmetry.auth_asym_id
_pdbx_struct_special_symmetry.auth_comp_id
_pdbx_struct_special_symmetry.auth_seq_id
_pdbx_struct_special_symmetry.PDB_ins_code
_pdbx_struct_special_symmetry.label_asym_id
_pdbx_struct_special_symmetry.label_comp_id
_pdbx_struct_special_symmetry.label_seq_id
1 1 B CO 63 ? E CO .
2 1 B BA 65 ? F BA .
3 1 B HOH 85 ? H HOH .
4 1 B HOH 86 ? H HOH .
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
A4L O27 O N N 1
A4L C26 C N N 2
A4L C28 C N N 3
A4L N25 N N N 4
A4L C23 C N N 5
A4L C24 C N N 6
A4L C22 C N N 7
A4L C21 C N N 8
A4L C20 C N N 9
A4L C19 C N N 10
A4L N18 N N N 11
A4L C10 C Y N 12
A4L C5 C Y N 13
A4L C4 C Y N 14
A4L C3 C Y N 15
A4L C2 C Y N 16
A4L CL15 CL N N 17
A4L C9 C Y N 18
A4L C14 C Y N 19
A4L C13 C Y N 20
A4L O16 O N N 21
A4L C17 C N N 22
A4L C12 C Y N 23
A4L C11 C Y N 24
A4L C8 C Y N 25
A4L N7 N Y N 26
A4L C6 C Y N 27
A4L C1 C Y N 28
A4L N1 N N N 29
A4L C7 C N N 30
A4L C15 C N N 31
A4L C16 C N N 32
A4L C18 C N N 33
A4L C25 C N N 34
A4L N2 N N N 35
A4L N3 N N N 36
A4L C27 C N N 37
A4L C29 C N N 38
A4L O1 O N N 39
A4L N4 N N N 40
A4L C30 C N N 41
A4L C31 C N N 42
A4L O2 O N N 43
A4L C32 C N N 44
A4L O3 O N N 45
A4L C33 C N N 46
A4L N5 N N N 47
A4L O4 O N N 48
A4L C34 C N N 49
A4L C35 C N N 50
A4L C36 C N N 51
A4L C37 C N N 52
A4L N6 N N N 53
A4L C38 C N N 54
A4L C39 C N N 55
A4L C40 C N N 56
A4L C41 C N N 57
A4L N8 N N N 58
A4L C42 C N N 59
A4L C43 C N N 60
A4L C44 C N N 61
A4L C45 C N N 62
A4L N9 N N N 63
A4L C46 C N N 64
A4L O5 O N N 65
A4L H281 H N N 66
A4L H282 H N N 67
A4L H283 H N N 68
A4L H1 H N N 69
A4L H23 H N N 70
A4L H221 H N N 71
A4L H222 H N N 72
A4L H211 H N N 73
A4L H212 H N N 74
A4L H201 H N N 75
A4L H202 H N N 76
A4L H191 H N N 77
A4L H192 H N N 78
A4L H18 H N N 79
A4L H4 H N N 80
A4L H3 H N N 81
A4L H14 H N N 82
A4L H171 H N N 83
A4L H172 H N N 84
A4L H173 H N N 85
A4L H12 H N N 86
A4L H11 H N N 87
A4L HN7 H N N 88
A4L H2 H N N 89
A4L HN11 H N N 90
A4L HN12 H N N 91
A4L H71 H N N 92
A4L H72 H N N 93
A4L H151 H N N 94
A4L H152 H N N 95
A4L H161 H N N 96
A4L H162 H N N 97
A4L H181 H N N 98
A4L H182 H N N 99
A4L H25 H N N 100
A4L HN2 H N N 101
A4L HN3 H N N 102
A4L H27 H N N 103
A4L HN4 H N N 104
A4L H30 H N N 105
A4L H33 H N N 106
A4L HN5 H N N 107
A4L H341 H N N 108
A4L H342 H N N 109
A4L H351 H N N 110
A4L H352 H N N 111
A4L H361 H N N 112
A4L H362 H N N 113
A4L H371 H N N 114
A4L H372 H N N 115
A4L HN61 H N N 116
A4L HN62 H N N 117
A4L H381 H N N 118
A4L H382 H N N 119
A4L H391 H N N 120
A4L H392 H N N 121
A4L H401 H N N 122
A4L H402 H N N 123
A4L H411 H N N 124
A4L H412 H N N 125
A4L HN81 H N N 126
A4L HN82 H N N 127
A4L H421 H N N 128
A4L H422 H N N 129
A4L H431 H N N 130
A4L H432 H N N 131
A4L H441 H N N 132
A4L H442 H N N 133
A4L H451 H N N 134
A4L H452 H N N 135
A4L HN91 H N N 136
A4L HN92 H N N 137
A4L HC46 H N N 138
BA BA BA N N 139
CO CO CO N N 140
DA OP3 O N N 141
DA P P N N 142
DA OP1 O N N 143
DA OP2 O N N 144
DA "O5'" O N N 145
DA "C5'" C N N 146
DA "C4'" C N R 147
DA "O4'" O N N 148
DA "C3'" C N S 149
DA "O3'" O N N 150
DA "C2'" C N N 151
DA "C1'" C N R 152
DA N9 N Y N 153
DA C8 C Y N 154
DA N7 N Y N 155
DA C5 C Y N 156
DA C6 C Y N 157
DA N6 N N N 158
DA N1 N Y N 159
DA C2 C Y N 160
DA N3 N Y N 161
DA C4 C Y N 162
DA HOP3 H N N 163
DA HOP2 H N N 164
DA "H5'" H N N 165
DA "H5''" H N N 166
DA "H4'" H N N 167
DA "H3'" H N N 168
DA "HO3'" H N N 169
DA "H2'" H N N 170
DA "H2''" H N N 171
DA "H1'" H N N 172
DA H8 H N N 173
DA H61 H N N 174
DA H62 H N N 175
DA H2 H N N 176
DC OP3 O N N 177
DC P P N N 178
DC OP1 O N N 179
DC OP2 O N N 180
DC "O5'" O N N 181
DC "C5'" C N N 182
DC "C4'" C N R 183
DC "O4'" O N N 184
DC "C3'" C N S 185
DC "O3'" O N N 186
DC "C2'" C N N 187
DC "C1'" C N R 188
DC N1 N N N 189
DC C2 C N N 190
DC O2 O N N 191
DC N3 N N N 192
DC C4 C N N 193
DC N4 N N N 194
DC C5 C N N 195
DC C6 C N N 196
DC HOP3 H N N 197
DC HOP2 H N N 198
DC "H5'" H N N 199
DC "H5''" H N N 200
DC "H4'" H N N 201
DC "H3'" H N N 202
DC "HO3'" H N N 203
DC "H2'" H N N 204
DC "H2''" H N N 205
DC "H1'" H N N 206
DC H41 H N N 207
DC H42 H N N 208
DC H5 H N N 209
DC H6 H N N 210
DG OP3 O N N 211
DG P P N N 212
DG OP1 O N N 213
DG OP2 O N N 214
DG "O5'" O N N 215
DG "C5'" C N N 216
DG "C4'" C N R 217
DG "O4'" O N N 218
DG "C3'" C N S 219
DG "O3'" O N N 220
DG "C2'" C N N 221
DG "C1'" C N R 222
DG N9 N Y N 223
DG C8 C Y N 224
DG N7 N Y N 225
DG C5 C Y N 226
DG C6 C N N 227
DG O6 O N N 228
DG N1 N N N 229
DG C2 C N N 230
DG N2 N N N 231
DG N3 N N N 232
DG C4 C Y N 233
DG HOP3 H N N 234
DG HOP2 H N N 235
DG "H5'" H N N 236
DG "H5''" H N N 237
DG "H4'" H N N 238
DG "H3'" H N N 239
DG "HO3'" H N N 240
DG "H2'" H N N 241
DG "H2''" H N N 242
DG "H1'" H N N 243
DG H8 H N N 244
DG H1 H N N 245
DG H21 H N N 246
DG H22 H N N 247
DT OP3 O N N 248
DT P P N N 249
DT OP1 O N N 250
DT OP2 O N N 251
DT "O5'" O N N 252
DT "C5'" C N N 253
DT "C4'" C N R 254
DT "O4'" O N N 255
DT "C3'" C N S 256
DT "O3'" O N N 257
DT "C2'" C N N 258
DT "C1'" C N R 259
DT N1 N N N 260
DT C2 C N N 261
DT O2 O N N 262
DT N3 N N N 263
DT C4 C N N 264
DT O4 O N N 265
DT C5 C N N 266
DT C7 C N N 267
DT C6 C N N 268
DT HOP3 H N N 269
DT HOP2 H N N 270
DT "H5'" H N N 271
DT "H5''" H N N 272
DT "H4'" H N N 273
DT "H3'" H N N 274
DT "HO3'" H N N 275
DT "H2'" H N N 276
DT "H2''" H N N 277
DT "H1'" H N N 278
DT H3 H N N 279
DT H71 H N N 280
DT H72 H N N 281
DT H73 H N N 282
DT H6 H N N 283
HOH O O N N 284
HOH H1 H N N 285
HOH H2 H N N 286
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A4L O27 C26 doub N N 1
A4L C26 C28 sing N N 2
A4L C26 N25 sing N N 3
A4L C28 H281 sing N N 4
A4L C28 H282 sing N N 5
A4L C28 H283 sing N N 6
A4L N25 C23 sing N N 7
A4L N25 H1 sing N N 8
A4L C23 C24 sing N N 9
A4L C23 C22 sing N N 10
A4L C23 H23 sing N N 11
A4L C24 N5 sing N N 12
A4L C24 O4 doub N N 13
A4L C22 C21 sing N N 14
A4L C22 H221 sing N N 15
A4L C22 H222 sing N N 16
A4L C21 C20 sing N N 17
A4L C21 H211 sing N N 18
A4L C21 H212 sing N N 19
A4L C20 C19 sing N N 20
A4L C20 H201 sing N N 21
A4L C20 H202 sing N N 22
A4L C19 N18 sing N N 23
A4L C19 H191 sing N N 24
A4L C19 H192 sing N N 25
A4L N18 C10 sing N N 26
A4L N18 H18 sing N N 27
A4L C10 C5 sing Y N 28
A4L C10 C9 doub Y N 29
A4L C5 C4 doub Y N 30
A4L C5 C6 sing Y N 31
A4L C4 C3 sing Y N 32
A4L C4 H4 sing N N 33
A4L C3 C2 doub Y N 34
A4L C3 H3 sing N N 35
A4L C2 CL15 sing N N 36
A4L C2 C1 sing Y N 37
A4L C9 C14 sing Y N 38
A4L C9 C8 sing Y N 39
A4L C14 C13 doub Y N 40
A4L C14 H14 sing N N 41
A4L C13 O16 sing N N 42
A4L C13 C12 sing Y N 43
A4L O16 C17 sing N N 44
A4L C17 H171 sing N N 45
A4L C17 H172 sing N N 46
A4L C17 H173 sing N N 47
A4L C12 C11 doub Y N 48
A4L C12 H12 sing N N 49
A4L C11 C8 sing Y N 50
A4L C11 H11 sing N N 51
A4L C8 N7 doub Y N 52
A4L N7 C6 sing Y N 53
A4L N7 HN7 sing N N 54
A4L C6 C1 doub Y N 55
A4L C1 H2 sing N N 56
A4L N1 C7 sing N N 57
A4L N1 HN11 sing N N 58
A4L N1 HN12 sing N N 59
A4L C7 C15 sing N N 60
A4L C7 H71 sing N N 61
A4L C7 H72 sing N N 62
A4L C15 C16 sing N N 63
A4L C15 H151 sing N N 64
A4L C15 H152 sing N N 65
A4L C16 C18 sing N N 66
A4L C16 H161 sing N N 67
A4L C16 H162 sing N N 68
A4L C18 C25 sing N N 69
A4L C18 H181 sing N N 70
A4L C18 H182 sing N N 71
A4L C25 N2 sing N N 72
A4L C25 C46 sing N N 73
A4L C25 H25 sing N N 74
A4L N2 N3 sing N N 75
A4L N2 HN2 sing N N 76
A4L N3 C27 sing N N 77
A4L N3 HN3 sing N N 78
A4L C27 C29 sing N N 79
A4L C27 C42 sing N N 80
A4L C27 H27 sing N N 81
A4L C29 O1 doub N N 82
A4L C29 N4 sing N N 83
A4L N4 C30 sing N N 84
A4L N4 HN4 sing N N 85
A4L C30 C31 sing N N 86
A4L C30 C38 sing N N 87
A4L C30 H30 sing N N 88
A4L C31 O2 doub N N 89
A4L C31 C32 sing N N 90
A4L C32 O3 doub N N 91
A4L C32 C33 sing N N 92
A4L C33 N5 sing N N 93
A4L C33 C34 sing N N 94
A4L C33 H33 sing N N 95
A4L N5 HN5 sing N N 96
A4L C34 C35 sing N N 97
A4L C34 H341 sing N N 98
A4L C34 H342 sing N N 99
A4L C35 C36 sing N N 100
A4L C35 H351 sing N N 101
A4L C35 H352 sing N N 102
A4L C36 C37 sing N N 103
A4L C36 H361 sing N N 104
A4L C36 H362 sing N N 105
A4L C37 N6 sing N N 106
A4L C37 H371 sing N N 107
A4L C37 H372 sing N N 108
A4L N6 HN61 sing N N 109
A4L N6 HN62 sing N N 110
A4L C38 C39 sing N N 111
A4L C38 H381 sing N N 112
A4L C38 H382 sing N N 113
A4L C39 C40 sing N N 114
A4L C39 H391 sing N N 115
A4L C39 H392 sing N N 116
A4L C40 C41 sing N N 117
A4L C40 H401 sing N N 118
A4L C40 H402 sing N N 119
A4L C41 N8 sing N N 120
A4L C41 H411 sing N N 121
A4L C41 H412 sing N N 122
A4L N8 HN81 sing N N 123
A4L N8 HN82 sing N N 124
A4L C42 C43 sing N N 125
A4L C42 H421 sing N N 126
A4L C42 H422 sing N N 127
A4L C43 C44 sing N N 128
A4L C43 H431 sing N N 129
A4L C43 H432 sing N N 130
A4L C44 C45 sing N N 131
A4L C44 H441 sing N N 132
A4L C44 H442 sing N N 133
A4L C45 N9 sing N N 134
A4L C45 H451 sing N N 135
A4L C45 H452 sing N N 136
A4L N9 HN91 sing N N 137
A4L N9 HN92 sing N N 138
A4L C46 O5 doub N N 139
A4L C46 HC46 sing N N 140
DA OP3 P sing N N 141
DA OP3 HOP3 sing N N 142
DA P OP1 doub N N 143
DA P OP2 sing N N 144
DA P "O5'" sing N N 145
DA OP2 HOP2 sing N N 146
DA "O5'" "C5'" sing N N 147
DA "C5'" "C4'" sing N N 148
DA "C5'" "H5'" sing N N 149
DA "C5'" "H5''" sing N N 150
DA "C4'" "O4'" sing N N 151
DA "C4'" "C3'" sing N N 152
DA "C4'" "H4'" sing N N 153
DA "O4'" "C1'" sing N N 154
DA "C3'" "O3'" sing N N 155
DA "C3'" "C2'" sing N N 156
DA "C3'" "H3'" sing N N 157
DA "O3'" "HO3'" sing N N 158
DA "C2'" "C1'" sing N N 159
DA "C2'" "H2'" sing N N 160
DA "C2'" "H2''" sing N N 161
DA "C1'" N9 sing N N 162
DA "C1'" "H1'" sing N N 163
DA N9 C8 sing Y N 164
DA N9 C4 sing Y N 165
DA C8 N7 doub Y N 166
DA C8 H8 sing N N 167
DA N7 C5 sing Y N 168
DA C5 C6 sing Y N 169
DA C5 C4 doub Y N 170
DA C6 N6 sing N N 171
DA C6 N1 doub Y N 172
DA N6 H61 sing N N 173
DA N6 H62 sing N N 174
DA N1 C2 sing Y N 175
DA C2 N3 doub Y N 176
DA C2 H2 sing N N 177
DA N3 C4 sing Y N 178
DC OP3 P sing N N 179
DC OP3 HOP3 sing N N 180
DC P OP1 doub N N 181
DC P OP2 sing N N 182
DC P "O5'" sing N N 183
DC OP2 HOP2 sing N N 184
DC "O5'" "C5'" sing N N 185
DC "C5'" "C4'" sing N N 186
DC "C5'" "H5'" sing N N 187
DC "C5'" "H5''" sing N N 188
DC "C4'" "O4'" sing N N 189
DC "C4'" "C3'" sing N N 190
DC "C4'" "H4'" sing N N 191
DC "O4'" "C1'" sing N N 192
DC "C3'" "O3'" sing N N 193
DC "C3'" "C2'" sing N N 194
DC "C3'" "H3'" sing N N 195
DC "O3'" "HO3'" sing N N 196
DC "C2'" "C1'" sing N N 197
DC "C2'" "H2'" sing N N 198
DC "C2'" "H2''" sing N N 199
DC "C1'" N1 sing N N 200
DC "C1'" "H1'" sing N N 201
DC N1 C2 sing N N 202
DC N1 C6 sing N N 203
DC C2 O2 doub N N 204
DC C2 N3 sing N N 205
DC N3 C4 doub N N 206
DC C4 N4 sing N N 207
DC C4 C5 sing N N 208
DC N4 H41 sing N N 209
DC N4 H42 sing N N 210
DC C5 C6 doub N N 211
DC C5 H5 sing N N 212
DC C6 H6 sing N N 213
DG OP3 P sing N N 214
DG OP3 HOP3 sing N N 215
DG P OP1 doub N N 216
DG P OP2 sing N N 217
DG P "O5'" sing N N 218
DG OP2 HOP2 sing N N 219
DG "O5'" "C5'" sing N N 220
DG "C5'" "C4'" sing N N 221
DG "C5'" "H5'" sing N N 222
DG "C5'" "H5''" sing N N 223
DG "C4'" "O4'" sing N N 224
DG "C4'" "C3'" sing N N 225
DG "C4'" "H4'" sing N N 226
DG "O4'" "C1'" sing N N 227
DG "C3'" "O3'" sing N N 228
DG "C3'" "C2'" sing N N 229
DG "C3'" "H3'" sing N N 230
DG "O3'" "HO3'" sing N N 231
DG "C2'" "C1'" sing N N 232
DG "C2'" "H2'" sing N N 233
DG "C2'" "H2''" sing N N 234
DG "C1'" N9 sing N N 235
DG "C1'" "H1'" sing N N 236
DG N9 C8 sing Y N 237
DG N9 C4 sing Y N 238
DG C8 N7 doub Y N 239
DG C8 H8 sing N N 240
DG N7 C5 sing Y N 241
DG C5 C6 sing N N 242
DG C5 C4 doub Y N 243
DG C6 O6 doub N N 244
DG C6 N1 sing N N 245
DG N1 C2 sing N N 246
DG N1 H1 sing N N 247
DG C2 N2 sing N N 248
DG C2 N3 doub N N 249
DG N2 H21 sing N N 250
DG N2 H22 sing N N 251
DG N3 C4 sing N N 252
DT OP3 P sing N N 253
DT OP3 HOP3 sing N N 254
DT P OP1 doub N N 255
DT P OP2 sing N N 256
DT P "O5'" sing N N 257
DT OP2 HOP2 sing N N 258
DT "O5'" "C5'" sing N N 259
DT "C5'" "C4'" sing N N 260
DT "C5'" "H5'" sing N N 261
DT "C5'" "H5''" sing N N 262
DT "C4'" "O4'" sing N N 263
DT "C4'" "C3'" sing N N 264
DT "C4'" "H4'" sing N N 265
DT "O4'" "C1'" sing N N 266
DT "C3'" "O3'" sing N N 267
DT "C3'" "C2'" sing N N 268
DT "C3'" "H3'" sing N N 269
DT "O3'" "HO3'" sing N N 270
DT "C2'" "C1'" sing N N 271
DT "C2'" "H2'" sing N N 272
DT "C2'" "H2''" sing N N 273
DT "C1'" N1 sing N N 274
DT "C1'" "H1'" sing N N 275
DT N1 C2 sing N N 276
DT N1 C6 sing N N 277
DT C2 O2 doub N N 278
DT C2 N3 sing N N 279
DT N3 C4 sing N N 280
DT N3 H3 sing N N 281
DT C4 O4 doub N N 282
DT C4 C5 sing N N 283
DT C5 C7 sing N N 284
DT C5 C6 doub N N 285
DT C7 H71 sing N N 286
DT C7 H72 sing N N 287
DT C7 H73 sing N N 288
DT C6 H6 sing N N 289
HOH O H1 sing N N 290
HOH O H2 sing N N 291
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
1XCS 'double helix'
1XCS 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 2 1_555 B DC 5 1_555 -0.363 -0.149 -0.128 -10.175 6.089 -0.469 1 A_DG2:DC11_B A 2 ? B 11 ? 19 1
1 A DT 3 1_555 B DA 4 1_555 0.089 -0.173 0.147 1.029 -0.704 1.460 2 A_DT3:DA10_B A 3 ? B 10 ? 20 1
1 A DA 4 1_555 B DT 3 1_555 0.119 -0.086 -0.189 -1.111 -0.273 -4.756 3 A_DA4:DT9_B A 4 ? B 9 ? 20 1
1 A DC 5 1_555 B DG 2 1_555 0.237 -0.118 -0.209 16.377 -3.148 0.464 4 A_DC5:DG8_B A 5 ? B 8 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DG 2 1_555 B DC 5 1_555 A DT 3 1_555 B DA 4 1_555 -0.061 -0.330 3.130 -2.877 2.546 27.146 -1.295 -0.550 3.077 5.390 6.091
27.411 1 AA_DG2DT3:DA10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ?
1 A DT 3 1_555 B DA 4 1_555 A DA 4 1_555 B DT 3 1_555 -0.213 -0.509 3.345 2.753 1.525 36.645 -1.019 0.719 3.298 2.420 -4.369
36.775 2 AA_DT3DA4:DT9DA10_BB A 3 ? B 10 ? A 4 ? B 9 ?
1 A DA 4 1_555 B DT 3 1_555 A DC 5 1_555 B DG 2 1_555 0.950 -0.631 2.970 -1.729 5.074 28.036 -2.301 -2.274 2.753 10.354 3.528
28.534 3 AA_DA4DC5:DG8DT9_BB A 4 ? B 9 ? A 5 ? B 8 ?
#
_atom_sites.entry_id 1XCS
_atom_sites.fract_transf_matrix[1][1] 0.034893
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.018701
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.024575
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
BA
C
CL
CO
N
O
P
#
loop_