data_1XCS # _entry.id 1XCS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1XCS pdb_00001xcs 10.2210/pdb1xcs/pdb NDB DD0064 ? ? RCSB RCSB030212 ? ? WWPDB D_1000030212 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-07-19 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-11-16 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' diffrn_source 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 23 5 'Structure model' '_pdbx_struct_conn_angle.value' 24 5 'Structure model' '_struct_conn.pdbx_dist_value' 25 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 26 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 27 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 28 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 29 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 30 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 31 5 'Structure model' '_struct_conn.ptnr1_symmetry' 32 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 33 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 34 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 35 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 36 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 37 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 38 5 'Structure model' '_struct_conn.ptnr2_symmetry' 39 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 40 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 41 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1XCS _pdbx_database_status.recvd_initial_deposition_date 2004-09-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Valls, N.' 1 'Steiner, R.A.' 2 'Wright, G.' 3 'Murshudov, G.N.' 4 'Subirana, J.A.' 5 # _citation.id primary _citation.title 'Variable role of ions in two drug intercalation complexes of DNA' _citation.journal_abbrev J.Biol.Inorg.Chem. _citation.journal_volume 10 _citation.page_first 476 _citation.page_last 482 _citation.year 2005 _citation.journal_id_ASTM JJBCFA _citation.country GW _citation.journal_id_ISSN 0949-8257 _citation.journal_id_CSD 2154 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15926069 _citation.pdbx_database_id_DOI 10.1007/s00775-005-0655-3 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Valls, N.' 1 ? primary 'Steiner, R.A.' 2 ? primary 'Wright, G.' 3 ? primary 'Murshudov, G.N.' 4 ? primary 'Subirana, J.A.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*TP*AP*CP*G)-3'" 1809.217 2 ? ? ? ? 2 non-polymer syn 'COBALT (II) ION' 58.933 2 ? ? ? ? 3 non-polymer syn ;9-[(5-(ACETYLAMINO)-6-{[(1S,4R)-8-AMINO-4-[((2R)-6-AMINO-2-{2-[(1S)-5-AMINO-1-FORMYLPENTYL]HYDRAZINO}HEXANOYL)AMINO]-1-(4-AMINOBUTYL)-2,3-DIOXOOCTYL]AMINO}-6-OXOHEXYL)AMINO]-6-CHLORO-2-METHOXYACRIDINIUM ; 927.594 1 ? ? ? ? 4 non-polymer syn 'BARIUM ION' 137.327 1 ? ? ? ? 5 water nat water 18.015 44 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(DA)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGTACG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COBALT (II) ION' CO 3 ;9-[(5-(ACETYLAMINO)-6-{[(1S,4R)-8-AMINO-4-[((2R)-6-AMINO-2-{2-[(1S)-5-AMINO-1-FORMYLPENTYL]HYDRAZINO}HEXANOYL)AMINO]-1-(4-AMINOBUTYL)-2,3-DIOXOOCTYL]AMINO}-6-OXOHEXYL)AMINO]-6-CHLORO-2-METHOXYACRIDINIUM ; A4L 4 'BARIUM ION' BA 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 DC n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A4L non-polymer . ;9-[(5-(ACETYLAMINO)-6-{[(1S,4R)-8-AMINO-4-[((2R)-6-AMINO-2-{2-[(1S)-5-AMINO-1-FORMYLPENTYL]HYDRAZINO}HEXANOYL)AMINO]-1-(4-AMINOBUTYL)-2,3-DIOXOOCTYL]AMINO}-6-OXOHEXYL)AMINO]-6-CHLORO-2-METHOXYACRIDINIUM ; ? 'C46 H73 Cl N11 O7 1' 927.594 BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n B 1 1 DC 1 7 7 DC C B . n B 1 2 DG 2 8 8 DG G B . n B 1 3 DT 3 9 9 DT T B . n B 1 4 DA 4 10 10 DA A B . n B 1 5 DC 5 11 11 DC C B . n B 1 6 DG 6 12 12 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CO 1 64 14 CO CO A . D 3 A4L 1 71 1 A4L A4L A . E 2 CO 1 63 13 CO CO B . F 4 BA 1 65 15 BA BA B . G 5 HOH 1 72 3 HOH HOH A . G 5 HOH 2 73 6 HOH HOH A . G 5 HOH 3 74 8 HOH HOH A . G 5 HOH 4 75 14 HOH HOH A . G 5 HOH 5 76 15 HOH HOH A . G 5 HOH 6 77 18 HOH HOH A . G 5 HOH 7 78 19 HOH HOH A . G 5 HOH 8 79 20 HOH HOH A . G 5 HOH 9 80 22 HOH HOH A . G 5 HOH 10 81 23 HOH HOH A . G 5 HOH 11 82 24 HOH HOH A . G 5 HOH 12 83 27 HOH HOH A . G 5 HOH 13 84 35 HOH HOH A . G 5 HOH 14 85 36 HOH HOH A . G 5 HOH 15 86 42 HOH HOH A . G 5 HOH 16 87 45 HOH HOH A . G 5 HOH 17 88 50 HOH HOH A . G 5 HOH 18 89 54 HOH HOH A . G 5 HOH 19 90 58 HOH HOH A . H 5 HOH 1 66 1 HOH HOH B . H 5 HOH 2 67 2 HOH HOH B . H 5 HOH 3 68 4 HOH HOH B . H 5 HOH 4 69 5 HOH HOH B . H 5 HOH 5 70 7 HOH HOH B . H 5 HOH 6 71 9 HOH HOH B . H 5 HOH 7 72 10 HOH HOH B . H 5 HOH 8 73 11 HOH HOH B . H 5 HOH 9 74 12 HOH HOH B . H 5 HOH 10 75 13 HOH HOH B . H 5 HOH 11 76 17 HOH HOH B . H 5 HOH 12 77 21 HOH HOH B . H 5 HOH 13 78 25 HOH HOH B . H 5 HOH 14 79 28 HOH HOH B . H 5 HOH 15 80 29 HOH HOH B . H 5 HOH 16 81 30 HOH HOH B . H 5 HOH 17 82 31 HOH HOH B . H 5 HOH 18 83 33 HOH HOH B . H 5 HOH 19 84 34 HOH HOH B . H 5 HOH 20 85 37 HOH HOH B . H 5 HOH 21 86 38 HOH HOH B . H 5 HOH 22 87 44 HOH HOH B . H 5 HOH 23 88 46 HOH HOH B . H 5 HOH 24 89 51 HOH HOH B . H 5 HOH 25 90 56 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A DC 1 ? "O5'" ? A DC 1 "O5'" 2 1 Y 1 A DC 1 ? "C5'" ? A DC 1 "C5'" 3 1 Y 1 A DC 1 ? "C4'" ? A DC 1 "C4'" 4 1 Y 1 A DC 1 ? "O4'" ? A DC 1 "O4'" 5 1 Y 1 A DC 1 ? "C3'" ? A DC 1 "C3'" 6 1 Y 1 A DC 1 ? "C2'" ? A DC 1 "C2'" 7 1 Y 1 A DC 1 ? "C1'" ? A DC 1 "C1'" 8 1 Y 1 A DC 1 ? N1 ? A DC 1 N1 9 1 Y 1 A DC 1 ? C2 ? A DC 1 C2 10 1 Y 1 A DC 1 ? O2 ? A DC 1 O2 11 1 Y 1 A DC 1 ? N3 ? A DC 1 N3 12 1 Y 1 A DC 1 ? C4 ? A DC 1 C4 13 1 Y 1 A DC 1 ? N4 ? A DC 1 N4 14 1 Y 1 A DC 1 ? C5 ? A DC 1 C5 15 1 Y 1 A DC 1 ? C6 ? A DC 1 C6 16 1 N 1 A A4L 71 ? N1 ? D A4L 1 N1 17 1 N 1 A A4L 71 ? C7 ? D A4L 1 C7 18 1 N 1 A A4L 71 ? C15 ? D A4L 1 C15 19 1 N 1 A A4L 71 ? C16 ? D A4L 1 C16 20 1 N 1 A A4L 71 ? C18 ? D A4L 1 C18 21 1 N 1 A A4L 71 ? C25 ? D A4L 1 C25 22 1 N 1 A A4L 71 ? N2 ? D A4L 1 N2 23 1 N 1 A A4L 71 ? N3 ? D A4L 1 N3 24 1 N 1 A A4L 71 ? C27 ? D A4L 1 C27 25 1 N 1 A A4L 71 ? C29 ? D A4L 1 C29 26 1 N 1 A A4L 71 ? O1 ? D A4L 1 O1 27 1 N 1 A A4L 71 ? N4 ? D A4L 1 N4 28 1 N 1 A A4L 71 ? C30 ? D A4L 1 C30 29 1 N 1 A A4L 71 ? C31 ? D A4L 1 C31 30 1 N 1 A A4L 71 ? O2 ? D A4L 1 O2 31 1 N 1 A A4L 71 ? C32 ? D A4L 1 C32 32 1 N 1 A A4L 71 ? O3 ? D A4L 1 O3 33 1 N 1 A A4L 71 ? C33 ? D A4L 1 C33 34 1 N 1 A A4L 71 ? N5 ? D A4L 1 N5 35 1 N 1 A A4L 71 ? O4 ? D A4L 1 O4 36 1 N 1 A A4L 71 ? C34 ? D A4L 1 C34 37 1 N 1 A A4L 71 ? C35 ? D A4L 1 C35 38 1 N 1 A A4L 71 ? C36 ? D A4L 1 C36 39 1 N 1 A A4L 71 ? C37 ? D A4L 1 C37 40 1 N 1 A A4L 71 ? N6 ? D A4L 1 N6 41 1 N 1 A A4L 71 ? C38 ? D A4L 1 C38 42 1 N 1 A A4L 71 ? C39 ? D A4L 1 C39 43 1 N 1 A A4L 71 ? C40 ? D A4L 1 C40 44 1 N 1 A A4L 71 ? C41 ? D A4L 1 C41 45 1 N 1 A A4L 71 ? N8 ? D A4L 1 N8 46 1 N 1 A A4L 71 ? C42 ? D A4L 1 C42 47 1 N 1 A A4L 71 ? C43 ? D A4L 1 C43 48 1 N 1 A A4L 71 ? C44 ? D A4L 1 C44 49 1 N 1 A A4L 71 ? C45 ? D A4L 1 C45 50 1 N 1 A A4L 71 ? N9 ? D A4L 1 N9 51 1 N 1 A A4L 71 ? C46 ? D A4L 1 C46 52 1 N 1 A A4L 71 ? O5 ? D A4L 1 O5 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 # _cell.entry_id 1XCS _cell.length_a 28.659 _cell.length_b 53.473 _cell.length_c 40.691 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XCS _symmetry.space_group_name_H-M 'C 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1XCS _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.15 _exptl_crystal.density_percent_sol 42.90 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_details 'MPD, barium chloride, cobalt chloride, drug, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 'barium chloride' ? ? ? 1 3 1 'cobalt chloride' ? ? ? 1 4 1 drug ? ? ? 1 5 2 MPD ? ? ? 1 6 2 'barium chloride' ? ? ? 1 7 2 'cobalt chloride' ? ? ? 1 8 2 drug ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 120 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.80000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X11' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X11 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.80000 # _reflns.entry_id 1XCS _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.4 _reflns.d_resolution_low 40.82 _reflns.number_all ? _reflns.number_obs 6152 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.082 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.40 _reflns_shell.d_res_low 1.45 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.117 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1XCS _refine.ls_number_reflns_obs 5550 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.82 _refine.ls_d_res_high 1.40 _refine.ls_percent_reflns_obs 96.09 _refine.ls_R_factor_obs 0.19882 _refine.ls_R_factor_all 0.202 _refine.ls_R_factor_R_work 0.19348 _refine.ls_R_factor_R_free 0.25091 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.8 _refine.ls_number_reflns_R_free 602 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.962 _refine.correlation_coeff_Fo_to_Fc_free 0.940 _refine.B_iso_mean 21.894 _refine.aniso_B[1][1] 1.02 _refine.aniso_B[2][2] -0.40 _refine.aniso_B[3][3] -0.63 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.092 _refine.pdbx_overall_ESU_R_Free 0.086 _refine.overall_SU_ML 0.046 _refine.overall_SU_B 1.112 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 225 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 44 _refine_hist.number_atoms_total 300 _refine_hist.d_res_high 1.40 _refine_hist.d_res_low 40.82 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.021 ? 281 'X-RAY DIFFRACTION' ? r_bond_other_d 0.004 0.020 ? 131 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.147 3.000 ? 426 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.611 3.000 ? 322 'X-RAY DIFFRACTION' ? r_chiral_restr 0.093 0.200 ? 34 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.014 0.020 ? 144 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.012 0.020 ? 12 'X-RAY DIFFRACTION' ? r_nbd_refined 0.198 0.200 ? 82 'X-RAY DIFFRACTION' ? r_nbd_other 0.257 0.200 ? 185 'X-RAY DIFFRACTION' ? r_nbtor_other 0.129 0.200 ? 124 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.153 0.200 ? 30 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.215 0.200 ? 1 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.169 0.200 ? 36 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.266 0.200 ? 41 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.679 0.200 ? 9 'X-RAY DIFFRACTION' ? r_scbond_it 1.994 3.000 ? 281 'X-RAY DIFFRACTION' ? r_scangle_it 2.875 4.500 ? 426 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1.221 2.000 ? 281 'X-RAY DIFFRACTION' ? r_sphericity_free 3.403 2.000 ? 47 'X-RAY DIFFRACTION' ? r_sphericity_bonded 3.127 2.000 ? 253 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.403 _refine_ls_shell.d_res_low 1.440 _refine_ls_shell.number_reflns_R_work 395 _refine_ls_shell.R_factor_R_work 0.168 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.206 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 48 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1XCS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1XCS _struct.title 'structure of oligonucleotide/drug complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1XCS _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DRUG-DNA COMPLEX, DOUBLE HELIX, CO2+, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 4 ? G N N 5 ? H N N 5 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1XCS _struct_ref.pdbx_db_accession 1XCS _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1XCS A 1 ? 6 ? 1XCS 1 ? 6 ? 1 6 2 1 1XCS B 1 ? 6 ? 1XCS 7 ? 12 ? 7 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 2 N7 ? ? ? 1_555 C CO . CO ? ? A DG 2 A CO 64 1_555 ? ? ? ? ? ? ? 2.153 ? ? metalc2 metalc ? ? C CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 64 A HOH 72 1_555 ? ? ? ? ? ? ? 2.183 ? ? metalc3 metalc ? ? C CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 64 A HOH 78 1_555 ? ? ? ? ? ? ? 2.158 ? ? metalc4 metalc ? ? C CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 64 A HOH 79 1_555 ? ? ? ? ? ? ? 2.137 ? ? metalc5 metalc ? ? C CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 64 A HOH 89 1_555 ? ? ? ? ? ? ? 1.902 ? ? metalc6 metalc ? ? C CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 64 A HOH 90 1_555 ? ? ? ? ? ? ? 1.985 ? ? metalc7 metalc ? ? B DG 2 OP2 ? ? ? 1_555 F BA . BA ? ? B DG 8 B BA 65 1_555 ? ? ? ? ? ? ? 2.768 ? ? metalc8 metalc ? ? B DG 2 OP2 ? ? ? 3_656 F BA . BA ? ? B DG 8 B BA 65 1_555 ? ? ? ? ? ? ? 2.784 ? ? metalc9 metalc ? ? B DG 2 OP2 ? ? ? 4_556 F BA . BA ? ? B DG 8 B BA 65 1_555 ? ? ? ? ? ? ? 2.776 ? ? metalc10 metalc ? ? B DG 2 OP2 ? ? ? 2_655 F BA . BA ? ? B DG 8 B BA 65 1_555 ? ? ? ? ? ? ? 2.791 ? ? metalc11 metalc ? ? B DG 6 N7 ? ? ? 1_555 E CO . CO ? ? B DG 12 B CO 63 1_555 ? ? ? ? ? ? ? 2.140 ? ? metalc12 metalc ? ? B DG 6 N7 ? ? ? 3_755 E CO . CO ? ? B DG 12 B CO 63 1_555 ? ? ? ? ? ? ? 2.130 ? ? metalc13 metalc ? ? E CO . CO ? ? ? 1_555 H HOH . O ? ? B CO 63 B HOH 66 1_555 ? ? ? ? ? ? ? 2.145 ? ? metalc14 metalc ? ? E CO . CO ? ? ? 1_555 H HOH . O ? ? B CO 63 B HOH 66 3_755 ? ? ? ? ? ? ? 2.132 ? ? metalc15 metalc ? ? E CO . CO ? ? ? 1_555 H HOH . O ? ? B CO 63 B HOH 67 1_555 ? ? ? ? ? ? ? 2.050 ? ? metalc16 metalc ? ? E CO . CO ? ? ? 1_555 H HOH . O ? ? B CO 63 B HOH 67 3_755 ? ? ? ? ? ? ? 2.036 ? ? hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 3 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 3 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 2 ? A DG 2 ? 1_555 CO ? C CO . ? A CO 64 ? 1_555 O ? G HOH . ? A HOH 72 ? 1_555 91.1 ? 2 N7 ? A DG 2 ? A DG 2 ? 1_555 CO ? C CO . ? A CO 64 ? 1_555 O ? G HOH . ? A HOH 78 ? 1_555 90.1 ? 3 O ? G HOH . ? A HOH 72 ? 1_555 CO ? C CO . ? A CO 64 ? 1_555 O ? G HOH . ? A HOH 78 ? 1_555 90.1 ? 4 N7 ? A DG 2 ? A DG 2 ? 1_555 CO ? C CO . ? A CO 64 ? 1_555 O ? G HOH . ? A HOH 79 ? 1_555 90.4 ? 5 O ? G HOH . ? A HOH 72 ? 1_555 CO ? C CO . ? A CO 64 ? 1_555 O ? G HOH . ? A HOH 79 ? 1_555 90.9 ? 6 O ? G HOH . ? A HOH 78 ? 1_555 CO ? C CO . ? A CO 64 ? 1_555 O ? G HOH . ? A HOH 79 ? 1_555 178.9 ? 7 N7 ? A DG 2 ? A DG 2 ? 1_555 CO ? C CO . ? A CO 64 ? 1_555 O ? G HOH . ? A HOH 89 ? 1_555 95.9 ? 8 O ? G HOH . ? A HOH 72 ? 1_555 CO ? C CO . ? A CO 64 ? 1_555 O ? G HOH . ? A HOH 89 ? 1_555 171.6 ? 9 O ? G HOH . ? A HOH 78 ? 1_555 CO ? C CO . ? A CO 64 ? 1_555 O ? G HOH . ? A HOH 89 ? 1_555 85.3 ? 10 O ? G HOH . ? A HOH 79 ? 1_555 CO ? C CO . ? A CO 64 ? 1_555 O ? G HOH . ? A HOH 89 ? 1_555 93.7 ? 11 N7 ? A DG 2 ? A DG 2 ? 1_555 CO ? C CO . ? A CO 64 ? 1_555 O ? G HOH . ? A HOH 90 ? 1_555 176.7 ? 12 O ? G HOH . ? A HOH 72 ? 1_555 CO ? C CO . ? A CO 64 ? 1_555 O ? G HOH . ? A HOH 90 ? 1_555 90.7 ? 13 O ? G HOH . ? A HOH 78 ? 1_555 CO ? C CO . ? A CO 64 ? 1_555 O ? G HOH . ? A HOH 90 ? 1_555 92.7 ? 14 O ? G HOH . ? A HOH 79 ? 1_555 CO ? C CO . ? A CO 64 ? 1_555 O ? G HOH . ? A HOH 90 ? 1_555 86.7 ? 15 O ? G HOH . ? A HOH 89 ? 1_555 CO ? C CO . ? A CO 64 ? 1_555 O ? G HOH . ? A HOH 90 ? 1_555 82.6 ? 16 OP2 ? B DG 2 ? B DG 8 ? 1_555 BA ? F BA . ? B BA 65 ? 1_555 OP2 ? B DG 2 ? B DG 8 ? 3_656 109.7 ? 17 OP2 ? B DG 2 ? B DG 8 ? 1_555 BA ? F BA . ? B BA 65 ? 1_555 OP2 ? B DG 2 ? B DG 8 ? 4_556 70.8 ? 18 OP2 ? B DG 2 ? B DG 8 ? 3_656 BA ? F BA . ? B BA 65 ? 1_555 OP2 ? B DG 2 ? B DG 8 ? 4_556 176.7 ? 19 OP2 ? B DG 2 ? B DG 8 ? 1_555 BA ? F BA . ? B BA 65 ? 1_555 OP2 ? B DG 2 ? B DG 8 ? 2_655 177.4 ? 20 OP2 ? B DG 2 ? B DG 8 ? 3_656 BA ? F BA . ? B BA 65 ? 1_555 OP2 ? B DG 2 ? B DG 8 ? 2_655 70.4 ? 21 OP2 ? B DG 2 ? B DG 8 ? 4_556 BA ? F BA . ? B BA 65 ? 1_555 OP2 ? B DG 2 ? B DG 8 ? 2_655 109.2 ? 22 N7 ? B DG 6 ? B DG 12 ? 1_555 CO ? E CO . ? B CO 63 ? 1_555 N7 ? B DG 6 ? B DG 12 ? 3_755 177.1 ? 23 N7 ? B DG 6 ? B DG 12 ? 1_555 CO ? E CO . ? B CO 63 ? 1_555 O ? H HOH . ? B HOH 66 ? 1_555 92.2 ? 24 N7 ? B DG 6 ? B DG 12 ? 3_755 CO ? E CO . ? B CO 63 ? 1_555 O ? H HOH . ? B HOH 66 ? 1_555 89.5 ? 25 N7 ? B DG 6 ? B DG 12 ? 1_555 CO ? E CO . ? B CO 63 ? 1_555 O ? H HOH . ? B HOH 66 ? 3_755 89.6 ? 26 N7 ? B DG 6 ? B DG 12 ? 3_755 CO ? E CO . ? B CO 63 ? 1_555 O ? H HOH . ? B HOH 66 ? 3_755 92.8 ? 27 O ? H HOH . ? B HOH 66 ? 1_555 CO ? E CO . ? B CO 63 ? 1_555 O ? H HOH . ? B HOH 66 ? 3_755 88.4 ? 28 N7 ? B DG 6 ? B DG 12 ? 1_555 CO ? E CO . ? B CO 63 ? 1_555 O ? H HOH . ? B HOH 67 ? 1_555 89.6 ? 29 N7 ? B DG 6 ? B DG 12 ? 3_755 CO ? E CO . ? B CO 63 ? 1_555 O ? H HOH . ? B HOH 67 ? 1_555 88.1 ? 30 O ? H HOH . ? B HOH 66 ? 1_555 CO ? E CO . ? B CO 63 ? 1_555 O ? H HOH . ? B HOH 67 ? 1_555 86.8 ? 31 O ? H HOH . ? B HOH 66 ? 3_755 CO ? E CO . ? B CO 63 ? 1_555 O ? H HOH . ? B HOH 67 ? 1_555 175.1 ? 32 N7 ? B DG 6 ? B DG 12 ? 1_555 CO ? E CO . ? B CO 63 ? 1_555 O ? H HOH . ? B HOH 67 ? 3_755 88.2 ? 33 N7 ? B DG 6 ? B DG 12 ? 3_755 CO ? E CO . ? B CO 63 ? 1_555 O ? H HOH . ? B HOH 67 ? 3_755 90.3 ? 34 O ? H HOH . ? B HOH 66 ? 1_555 CO ? E CO . ? B CO 63 ? 1_555 O ? H HOH . ? B HOH 67 ? 3_755 175.8 ? 35 O ? H HOH . ? B HOH 66 ? 3_755 CO ? E CO . ? B CO 63 ? 1_555 O ? H HOH . ? B HOH 67 ? 3_755 87.5 ? 36 O ? H HOH . ? B HOH 67 ? 1_555 CO ? E CO . ? B CO 63 ? 1_555 O ? H HOH . ? B HOH 67 ? 3_755 97.4 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B CO 63 ? 6 'BINDING SITE FOR RESIDUE CO B 63' AC2 Software A CO 64 ? 6 'BINDING SITE FOR RESIDUE CO A 64' AC3 Software B BA 65 ? 4 'BINDING SITE FOR RESIDUE BA B 65' AC4 Software A A4L 71 ? 8 'BINDING SITE FOR RESIDUE A4L A 71' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 DG B 6 ? DG B 12 . ? 1_555 ? 2 AC1 6 DG B 6 ? DG B 12 . ? 3_755 ? 3 AC1 6 HOH H . ? HOH B 66 . ? 1_555 ? 4 AC1 6 HOH H . ? HOH B 66 . ? 3_755 ? 5 AC1 6 HOH H . ? HOH B 67 . ? 3_755 ? 6 AC1 6 HOH H . ? HOH B 67 . ? 1_555 ? 7 AC2 6 DG A 2 ? DG A 2 . ? 1_555 ? 8 AC2 6 HOH G . ? HOH A 72 . ? 1_555 ? 9 AC2 6 HOH G . ? HOH A 78 . ? 1_555 ? 10 AC2 6 HOH G . ? HOH A 79 . ? 1_555 ? 11 AC2 6 HOH G . ? HOH A 89 . ? 1_555 ? 12 AC2 6 HOH G . ? HOH A 90 . ? 1_555 ? 13 AC3 4 DG B 2 ? DG B 8 . ? 2_655 ? 14 AC3 4 DG B 2 ? DG B 8 . ? 3_656 ? 15 AC3 4 DG B 2 ? DG B 8 . ? 4_556 ? 16 AC3 4 DG B 2 ? DG B 8 . ? 1_555 ? 17 AC4 8 DT A 3 ? DT A 3 . ? 6_555 ? 18 AC4 8 DC A 5 ? DC A 5 . ? 1_555 ? 19 AC4 8 DC A 5 ? DC A 5 . ? 2_655 ? 20 AC4 8 DG A 6 ? DG A 6 . ? 1_555 ? 21 AC4 8 DG A 6 ? DG A 6 . ? 2_655 ? 22 AC4 8 DC B 1 ? DC B 7 . ? 3_656 ? 23 AC4 8 DG B 2 ? DG B 8 . ? 1_555 ? 24 AC4 8 DG B 2 ? DG B 8 . ? 2_655 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DC 5 ? ? "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 104.46 109.40 -4.94 0.80 N 2 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.59 108.30 4.29 0.30 N # _struct_site_keywords.site_id 1 _struct_site_keywords.text INTERCALATION # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 B CO 63 ? E CO . 2 1 B BA 65 ? F BA . 3 1 B HOH 85 ? H HOH . 4 1 B HOH 86 ? H HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A4L O27 O N N 1 A4L C26 C N N 2 A4L C28 C N N 3 A4L N25 N N N 4 A4L C23 C N N 5 A4L C24 C N N 6 A4L C22 C N N 7 A4L C21 C N N 8 A4L C20 C N N 9 A4L C19 C N N 10 A4L N18 N N N 11 A4L C10 C Y N 12 A4L C5 C Y N 13 A4L C4 C Y N 14 A4L C3 C Y N 15 A4L C2 C Y N 16 A4L CL15 CL N N 17 A4L C9 C Y N 18 A4L C14 C Y N 19 A4L C13 C Y N 20 A4L O16 O N N 21 A4L C17 C N N 22 A4L C12 C Y N 23 A4L C11 C Y N 24 A4L C8 C Y N 25 A4L N7 N Y N 26 A4L C6 C Y N 27 A4L C1 C Y N 28 A4L N1 N N N 29 A4L C7 C N N 30 A4L C15 C N N 31 A4L C16 C N N 32 A4L C18 C N N 33 A4L C25 C N N 34 A4L N2 N N N 35 A4L N3 N N N 36 A4L C27 C N N 37 A4L C29 C N N 38 A4L O1 O N N 39 A4L N4 N N N 40 A4L C30 C N N 41 A4L C31 C N N 42 A4L O2 O N N 43 A4L C32 C N N 44 A4L O3 O N N 45 A4L C33 C N N 46 A4L N5 N N N 47 A4L O4 O N N 48 A4L C34 C N N 49 A4L C35 C N N 50 A4L C36 C N N 51 A4L C37 C N N 52 A4L N6 N N N 53 A4L C38 C N N 54 A4L C39 C N N 55 A4L C40 C N N 56 A4L C41 C N N 57 A4L N8 N N N 58 A4L C42 C N N 59 A4L C43 C N N 60 A4L C44 C N N 61 A4L C45 C N N 62 A4L N9 N N N 63 A4L C46 C N N 64 A4L O5 O N N 65 A4L H281 H N N 66 A4L H282 H N N 67 A4L H283 H N N 68 A4L H1 H N N 69 A4L H23 H N N 70 A4L H221 H N N 71 A4L H222 H N N 72 A4L H211 H N N 73 A4L H212 H N N 74 A4L H201 H N N 75 A4L H202 H N N 76 A4L H191 H N N 77 A4L H192 H N N 78 A4L H18 H N N 79 A4L H4 H N N 80 A4L H3 H N N 81 A4L H14 H N N 82 A4L H171 H N N 83 A4L H172 H N N 84 A4L H173 H N N 85 A4L H12 H N N 86 A4L H11 H N N 87 A4L HN7 H N N 88 A4L H2 H N N 89 A4L HN11 H N N 90 A4L HN12 H N N 91 A4L H71 H N N 92 A4L H72 H N N 93 A4L H151 H N N 94 A4L H152 H N N 95 A4L H161 H N N 96 A4L H162 H N N 97 A4L H181 H N N 98 A4L H182 H N N 99 A4L H25 H N N 100 A4L HN2 H N N 101 A4L HN3 H N N 102 A4L H27 H N N 103 A4L HN4 H N N 104 A4L H30 H N N 105 A4L H33 H N N 106 A4L HN5 H N N 107 A4L H341 H N N 108 A4L H342 H N N 109 A4L H351 H N N 110 A4L H352 H N N 111 A4L H361 H N N 112 A4L H362 H N N 113 A4L H371 H N N 114 A4L H372 H N N 115 A4L HN61 H N N 116 A4L HN62 H N N 117 A4L H381 H N N 118 A4L H382 H N N 119 A4L H391 H N N 120 A4L H392 H N N 121 A4L H401 H N N 122 A4L H402 H N N 123 A4L H411 H N N 124 A4L H412 H N N 125 A4L HN81 H N N 126 A4L HN82 H N N 127 A4L H421 H N N 128 A4L H422 H N N 129 A4L H431 H N N 130 A4L H432 H N N 131 A4L H441 H N N 132 A4L H442 H N N 133 A4L H451 H N N 134 A4L H452 H N N 135 A4L HN91 H N N 136 A4L HN92 H N N 137 A4L HC46 H N N 138 BA BA BA N N 139 CO CO CO N N 140 DA OP3 O N N 141 DA P P N N 142 DA OP1 O N N 143 DA OP2 O N N 144 DA "O5'" O N N 145 DA "C5'" C N N 146 DA "C4'" C N R 147 DA "O4'" O N N 148 DA "C3'" C N S 149 DA "O3'" O N N 150 DA "C2'" C N N 151 DA "C1'" C N R 152 DA N9 N Y N 153 DA C8 C Y N 154 DA N7 N Y N 155 DA C5 C Y N 156 DA C6 C Y N 157 DA N6 N N N 158 DA N1 N Y N 159 DA C2 C Y N 160 DA N3 N Y N 161 DA C4 C Y N 162 DA HOP3 H N N 163 DA HOP2 H N N 164 DA "H5'" H N N 165 DA "H5''" H N N 166 DA "H4'" H N N 167 DA "H3'" H N N 168 DA "HO3'" H N N 169 DA "H2'" H N N 170 DA "H2''" H N N 171 DA "H1'" H N N 172 DA H8 H N N 173 DA H61 H N N 174 DA H62 H N N 175 DA H2 H N N 176 DC OP3 O N N 177 DC P P N N 178 DC OP1 O N N 179 DC OP2 O N N 180 DC "O5'" O N N 181 DC "C5'" C N N 182 DC "C4'" C N R 183 DC "O4'" O N N 184 DC "C3'" C N S 185 DC "O3'" O N N 186 DC "C2'" C N N 187 DC "C1'" C N R 188 DC N1 N N N 189 DC C2 C N N 190 DC O2 O N N 191 DC N3 N N N 192 DC C4 C N N 193 DC N4 N N N 194 DC C5 C N N 195 DC C6 C N N 196 DC HOP3 H N N 197 DC HOP2 H N N 198 DC "H5'" H N N 199 DC "H5''" H N N 200 DC "H4'" H N N 201 DC "H3'" H N N 202 DC "HO3'" H N N 203 DC "H2'" H N N 204 DC "H2''" H N N 205 DC "H1'" H N N 206 DC H41 H N N 207 DC H42 H N N 208 DC H5 H N N 209 DC H6 H N N 210 DG OP3 O N N 211 DG P P N N 212 DG OP1 O N N 213 DG OP2 O N N 214 DG "O5'" O N N 215 DG "C5'" C N N 216 DG "C4'" C N R 217 DG "O4'" O N N 218 DG "C3'" C N S 219 DG "O3'" O N N 220 DG "C2'" C N N 221 DG "C1'" C N R 222 DG N9 N Y N 223 DG C8 C Y N 224 DG N7 N Y N 225 DG C5 C Y N 226 DG C6 C N N 227 DG O6 O N N 228 DG N1 N N N 229 DG C2 C N N 230 DG N2 N N N 231 DG N3 N N N 232 DG C4 C Y N 233 DG HOP3 H N N 234 DG HOP2 H N N 235 DG "H5'" H N N 236 DG "H5''" H N N 237 DG "H4'" H N N 238 DG "H3'" H N N 239 DG "HO3'" H N N 240 DG "H2'" H N N 241 DG "H2''" H N N 242 DG "H1'" H N N 243 DG H8 H N N 244 DG H1 H N N 245 DG H21 H N N 246 DG H22 H N N 247 DT OP3 O N N 248 DT P P N N 249 DT OP1 O N N 250 DT OP2 O N N 251 DT "O5'" O N N 252 DT "C5'" C N N 253 DT "C4'" C N R 254 DT "O4'" O N N 255 DT "C3'" C N S 256 DT "O3'" O N N 257 DT "C2'" C N N 258 DT "C1'" C N R 259 DT N1 N N N 260 DT C2 C N N 261 DT O2 O N N 262 DT N3 N N N 263 DT C4 C N N 264 DT O4 O N N 265 DT C5 C N N 266 DT C7 C N N 267 DT C6 C N N 268 DT HOP3 H N N 269 DT HOP2 H N N 270 DT "H5'" H N N 271 DT "H5''" H N N 272 DT "H4'" H N N 273 DT "H3'" H N N 274 DT "HO3'" H N N 275 DT "H2'" H N N 276 DT "H2''" H N N 277 DT "H1'" H N N 278 DT H3 H N N 279 DT H71 H N N 280 DT H72 H N N 281 DT H73 H N N 282 DT H6 H N N 283 HOH O O N N 284 HOH H1 H N N 285 HOH H2 H N N 286 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A4L O27 C26 doub N N 1 A4L C26 C28 sing N N 2 A4L C26 N25 sing N N 3 A4L C28 H281 sing N N 4 A4L C28 H282 sing N N 5 A4L C28 H283 sing N N 6 A4L N25 C23 sing N N 7 A4L N25 H1 sing N N 8 A4L C23 C24 sing N N 9 A4L C23 C22 sing N N 10 A4L C23 H23 sing N N 11 A4L C24 N5 sing N N 12 A4L C24 O4 doub N N 13 A4L C22 C21 sing N N 14 A4L C22 H221 sing N N 15 A4L C22 H222 sing N N 16 A4L C21 C20 sing N N 17 A4L C21 H211 sing N N 18 A4L C21 H212 sing N N 19 A4L C20 C19 sing N N 20 A4L C20 H201 sing N N 21 A4L C20 H202 sing N N 22 A4L C19 N18 sing N N 23 A4L C19 H191 sing N N 24 A4L C19 H192 sing N N 25 A4L N18 C10 sing N N 26 A4L N18 H18 sing N N 27 A4L C10 C5 sing Y N 28 A4L C10 C9 doub Y N 29 A4L C5 C4 doub Y N 30 A4L C5 C6 sing Y N 31 A4L C4 C3 sing Y N 32 A4L C4 H4 sing N N 33 A4L C3 C2 doub Y N 34 A4L C3 H3 sing N N 35 A4L C2 CL15 sing N N 36 A4L C2 C1 sing Y N 37 A4L C9 C14 sing Y N 38 A4L C9 C8 sing Y N 39 A4L C14 C13 doub Y N 40 A4L C14 H14 sing N N 41 A4L C13 O16 sing N N 42 A4L C13 C12 sing Y N 43 A4L O16 C17 sing N N 44 A4L C17 H171 sing N N 45 A4L C17 H172 sing N N 46 A4L C17 H173 sing N N 47 A4L C12 C11 doub Y N 48 A4L C12 H12 sing N N 49 A4L C11 C8 sing Y N 50 A4L C11 H11 sing N N 51 A4L C8 N7 doub Y N 52 A4L N7 C6 sing Y N 53 A4L N7 HN7 sing N N 54 A4L C6 C1 doub Y N 55 A4L C1 H2 sing N N 56 A4L N1 C7 sing N N 57 A4L N1 HN11 sing N N 58 A4L N1 HN12 sing N N 59 A4L C7 C15 sing N N 60 A4L C7 H71 sing N N 61 A4L C7 H72 sing N N 62 A4L C15 C16 sing N N 63 A4L C15 H151 sing N N 64 A4L C15 H152 sing N N 65 A4L C16 C18 sing N N 66 A4L C16 H161 sing N N 67 A4L C16 H162 sing N N 68 A4L C18 C25 sing N N 69 A4L C18 H181 sing N N 70 A4L C18 H182 sing N N 71 A4L C25 N2 sing N N 72 A4L C25 C46 sing N N 73 A4L C25 H25 sing N N 74 A4L N2 N3 sing N N 75 A4L N2 HN2 sing N N 76 A4L N3 C27 sing N N 77 A4L N3 HN3 sing N N 78 A4L C27 C29 sing N N 79 A4L C27 C42 sing N N 80 A4L C27 H27 sing N N 81 A4L C29 O1 doub N N 82 A4L C29 N4 sing N N 83 A4L N4 C30 sing N N 84 A4L N4 HN4 sing N N 85 A4L C30 C31 sing N N 86 A4L C30 C38 sing N N 87 A4L C30 H30 sing N N 88 A4L C31 O2 doub N N 89 A4L C31 C32 sing N N 90 A4L C32 O3 doub N N 91 A4L C32 C33 sing N N 92 A4L C33 N5 sing N N 93 A4L C33 C34 sing N N 94 A4L C33 H33 sing N N 95 A4L N5 HN5 sing N N 96 A4L C34 C35 sing N N 97 A4L C34 H341 sing N N 98 A4L C34 H342 sing N N 99 A4L C35 C36 sing N N 100 A4L C35 H351 sing N N 101 A4L C35 H352 sing N N 102 A4L C36 C37 sing N N 103 A4L C36 H361 sing N N 104 A4L C36 H362 sing N N 105 A4L C37 N6 sing N N 106 A4L C37 H371 sing N N 107 A4L C37 H372 sing N N 108 A4L N6 HN61 sing N N 109 A4L N6 HN62 sing N N 110 A4L C38 C39 sing N N 111 A4L C38 H381 sing N N 112 A4L C38 H382 sing N N 113 A4L C39 C40 sing N N 114 A4L C39 H391 sing N N 115 A4L C39 H392 sing N N 116 A4L C40 C41 sing N N 117 A4L C40 H401 sing N N 118 A4L C40 H402 sing N N 119 A4L C41 N8 sing N N 120 A4L C41 H411 sing N N 121 A4L C41 H412 sing N N 122 A4L N8 HN81 sing N N 123 A4L N8 HN82 sing N N 124 A4L C42 C43 sing N N 125 A4L C42 H421 sing N N 126 A4L C42 H422 sing N N 127 A4L C43 C44 sing N N 128 A4L C43 H431 sing N N 129 A4L C43 H432 sing N N 130 A4L C44 C45 sing N N 131 A4L C44 H441 sing N N 132 A4L C44 H442 sing N N 133 A4L C45 N9 sing N N 134 A4L C45 H451 sing N N 135 A4L C45 H452 sing N N 136 A4L N9 HN91 sing N N 137 A4L N9 HN92 sing N N 138 A4L C46 O5 doub N N 139 A4L C46 HC46 sing N N 140 DA OP3 P sing N N 141 DA OP3 HOP3 sing N N 142 DA P OP1 doub N N 143 DA P OP2 sing N N 144 DA P "O5'" sing N N 145 DA OP2 HOP2 sing N N 146 DA "O5'" "C5'" sing N N 147 DA "C5'" "C4'" sing N N 148 DA "C5'" "H5'" sing N N 149 DA "C5'" "H5''" sing N N 150 DA "C4'" "O4'" sing N N 151 DA "C4'" "C3'" sing N N 152 DA "C4'" "H4'" sing N N 153 DA "O4'" "C1'" sing N N 154 DA "C3'" "O3'" sing N N 155 DA "C3'" "C2'" sing N N 156 DA "C3'" "H3'" sing N N 157 DA "O3'" "HO3'" sing N N 158 DA "C2'" "C1'" sing N N 159 DA "C2'" "H2'" sing N N 160 DA "C2'" "H2''" sing N N 161 DA "C1'" N9 sing N N 162 DA "C1'" "H1'" sing N N 163 DA N9 C8 sing Y N 164 DA N9 C4 sing Y N 165 DA C8 N7 doub Y N 166 DA C8 H8 sing N N 167 DA N7 C5 sing Y N 168 DA C5 C6 sing Y N 169 DA C5 C4 doub Y N 170 DA C6 N6 sing N N 171 DA C6 N1 doub Y N 172 DA N6 H61 sing N N 173 DA N6 H62 sing N N 174 DA N1 C2 sing Y N 175 DA C2 N3 doub Y N 176 DA C2 H2 sing N N 177 DA N3 C4 sing Y N 178 DC OP3 P sing N N 179 DC OP3 HOP3 sing N N 180 DC P OP1 doub N N 181 DC P OP2 sing N N 182 DC P "O5'" sing N N 183 DC OP2 HOP2 sing N N 184 DC "O5'" "C5'" sing N N 185 DC "C5'" "C4'" sing N N 186 DC "C5'" "H5'" sing N N 187 DC "C5'" "H5''" sing N N 188 DC "C4'" "O4'" sing N N 189 DC "C4'" "C3'" sing N N 190 DC "C4'" "H4'" sing N N 191 DC "O4'" "C1'" sing N N 192 DC "C3'" "O3'" sing N N 193 DC "C3'" "C2'" sing N N 194 DC "C3'" "H3'" sing N N 195 DC "O3'" "HO3'" sing N N 196 DC "C2'" "C1'" sing N N 197 DC "C2'" "H2'" sing N N 198 DC "C2'" "H2''" sing N N 199 DC "C1'" N1 sing N N 200 DC "C1'" "H1'" sing N N 201 DC N1 C2 sing N N 202 DC N1 C6 sing N N 203 DC C2 O2 doub N N 204 DC C2 N3 sing N N 205 DC N3 C4 doub N N 206 DC C4 N4 sing N N 207 DC C4 C5 sing N N 208 DC N4 H41 sing N N 209 DC N4 H42 sing N N 210 DC C5 C6 doub N N 211 DC C5 H5 sing N N 212 DC C6 H6 sing N N 213 DG OP3 P sing N N 214 DG OP3 HOP3 sing N N 215 DG P OP1 doub N N 216 DG P OP2 sing N N 217 DG P "O5'" sing N N 218 DG OP2 HOP2 sing N N 219 DG "O5'" "C5'" sing N N 220 DG "C5'" "C4'" sing N N 221 DG "C5'" "H5'" sing N N 222 DG "C5'" "H5''" sing N N 223 DG "C4'" "O4'" sing N N 224 DG "C4'" "C3'" sing N N 225 DG "C4'" "H4'" sing N N 226 DG "O4'" "C1'" sing N N 227 DG "C3'" "O3'" sing N N 228 DG "C3'" "C2'" sing N N 229 DG "C3'" "H3'" sing N N 230 DG "O3'" "HO3'" sing N N 231 DG "C2'" "C1'" sing N N 232 DG "C2'" "H2'" sing N N 233 DG "C2'" "H2''" sing N N 234 DG "C1'" N9 sing N N 235 DG "C1'" "H1'" sing N N 236 DG N9 C8 sing Y N 237 DG N9 C4 sing Y N 238 DG C8 N7 doub Y N 239 DG C8 H8 sing N N 240 DG N7 C5 sing Y N 241 DG C5 C6 sing N N 242 DG C5 C4 doub Y N 243 DG C6 O6 doub N N 244 DG C6 N1 sing N N 245 DG N1 C2 sing N N 246 DG N1 H1 sing N N 247 DG C2 N2 sing N N 248 DG C2 N3 doub N N 249 DG N2 H21 sing N N 250 DG N2 H22 sing N N 251 DG N3 C4 sing N N 252 DT OP3 P sing N N 253 DT OP3 HOP3 sing N N 254 DT P OP1 doub N N 255 DT P OP2 sing N N 256 DT P "O5'" sing N N 257 DT OP2 HOP2 sing N N 258 DT "O5'" "C5'" sing N N 259 DT "C5'" "C4'" sing N N 260 DT "C5'" "H5'" sing N N 261 DT "C5'" "H5''" sing N N 262 DT "C4'" "O4'" sing N N 263 DT "C4'" "C3'" sing N N 264 DT "C4'" "H4'" sing N N 265 DT "O4'" "C1'" sing N N 266 DT "C3'" "O3'" sing N N 267 DT "C3'" "C2'" sing N N 268 DT "C3'" "H3'" sing N N 269 DT "O3'" "HO3'" sing N N 270 DT "C2'" "C1'" sing N N 271 DT "C2'" "H2'" sing N N 272 DT "C2'" "H2''" sing N N 273 DT "C1'" N1 sing N N 274 DT "C1'" "H1'" sing N N 275 DT N1 C2 sing N N 276 DT N1 C6 sing N N 277 DT C2 O2 doub N N 278 DT C2 N3 sing N N 279 DT N3 C4 sing N N 280 DT N3 H3 sing N N 281 DT C4 O4 doub N N 282 DT C4 C5 sing N N 283 DT C5 C7 sing N N 284 DT C5 C6 doub N N 285 DT C7 H71 sing N N 286 DT C7 H72 sing N N 287 DT C7 H73 sing N N 288 DT C6 H6 sing N N 289 HOH O H1 sing N N 290 HOH O H2 sing N N 291 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1XCS 'double helix' 1XCS 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 B DC 5 1_555 -0.363 -0.149 -0.128 -10.175 6.089 -0.469 1 A_DG2:DC11_B A 2 ? B 11 ? 19 1 1 A DT 3 1_555 B DA 4 1_555 0.089 -0.173 0.147 1.029 -0.704 1.460 2 A_DT3:DA10_B A 3 ? B 10 ? 20 1 1 A DA 4 1_555 B DT 3 1_555 0.119 -0.086 -0.189 -1.111 -0.273 -4.756 3 A_DA4:DT9_B A 4 ? B 9 ? 20 1 1 A DC 5 1_555 B DG 2 1_555 0.237 -0.118 -0.209 16.377 -3.148 0.464 4 A_DC5:DG8_B A 5 ? B 8 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 B DC 5 1_555 A DT 3 1_555 B DA 4 1_555 -0.061 -0.330 3.130 -2.877 2.546 27.146 -1.295 -0.550 3.077 5.390 6.091 27.411 1 AA_DG2DT3:DA10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DT 3 1_555 B DA 4 1_555 A DA 4 1_555 B DT 3 1_555 -0.213 -0.509 3.345 2.753 1.525 36.645 -1.019 0.719 3.298 2.420 -4.369 36.775 2 AA_DT3DA4:DT9DA10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DA 4 1_555 B DT 3 1_555 A DC 5 1_555 B DG 2 1_555 0.950 -0.631 2.970 -1.729 5.074 28.036 -2.301 -2.274 2.753 10.354 3.528 28.534 3 AA_DA4DC5:DG8DT9_BB A 4 ? B 9 ? A 5 ? B 8 ? # _atom_sites.entry_id 1XCS _atom_sites.fract_transf_matrix[1][1] 0.034893 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018701 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024575 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BA C CL CO N O P # loop_