data_1XCU # _entry.id 1XCU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1XCU pdb_00001xcu 10.2210/pdb1xcu/pdb NDB DD0065 ? ? RCSB RCSB030214 ? ? WWPDB D_1000030214 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-07-19 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' pdbx_struct_special_symmetry 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 17 4 'Structure model' '_pdbx_struct_conn_angle.value' 18 4 'Structure model' '_struct_conn.pdbx_dist_value' 19 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 20 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 21 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 26 4 'Structure model' '_struct_conn.ptnr1_symmetry' 27 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 28 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 34 4 'Structure model' '_struct_conn.ptnr2_symmetry' 35 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 36 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 37 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1XCU _pdbx_database_status.recvd_initial_deposition_date 2004-09-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Valls, N.' 1 'Steiner, R.A.' 2 'Wright, G.' 3 'Murshudov, G.N.' 4 'Subirana, J.A.' 5 # _citation.id primary _citation.title 'Variable role of ions in two drug intercalation complexes of DNA' _citation.journal_abbrev J.Biol.Inorg.Chem. _citation.journal_volume 10 _citation.page_first 476 _citation.page_last 482 _citation.year 2005 _citation.journal_id_ASTM JJBCFA _citation.country GW _citation.journal_id_ISSN 0949-8257 _citation.journal_id_CSD 2154 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15926069 _citation.pdbx_database_id_DOI 10.1007/s00775-005-0655-3 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Valls, N.' 1 ? primary 'Steiner, R.A.' 2 ? primary 'Wright, G.' 3 ? primary 'Murshudov, G.N.' 4 ? primary 'Subirana, J.A.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*TP*AP*CP*G)-3'" 1809.217 2 ? ? ? ? 2 non-polymer syn 'COBALT (II) ION' 58.933 3 ? ? ? ? 3 non-polymer syn '1,5-BIS[3-(DIETHYLAMINO)PROPIONAMIDO]ANTHRACENE-9,10-DIONE' 492.610 2 ? ? ? ? 4 non-polymer syn 'BARIUM ION' 137.327 1 ? ? ? ? 5 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 6 water nat water 18.015 27 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(DA)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGTACG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COBALT (II) ION' CO 3 '1,5-BIS[3-(DIETHYLAMINO)PROPIONAMIDO]ANTHRACENE-9,10-DIONE' AN9 4 'BARIUM ION' BA 5 'SODIUM ION' NA 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 DC n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AN9 non-polymer . '1,5-BIS[3-(DIETHYLAMINO)PROPIONAMIDO]ANTHRACENE-9,10-DIONE' ? 'C28 H36 N4 O4' 492.610 BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n B 1 1 DC 1 7 7 DC C B . n B 1 2 DG 2 8 8 DG G B . n B 1 3 DT 3 9 9 DT T B . n B 1 4 DA 4 10 10 DA A B . n B 1 5 DC 5 11 11 DC C B . n B 1 6 DG 6 12 12 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CO 1 33 15 CO CO A . D 2 CO 1 35 17 CO CO A . E 3 AN9 1 41 1 AN9 AN4 A . F 2 CO 1 32 13 CO CO B . G 4 BA 1 34 16 BA BA B . H 5 NA 1 36 28 NA NA B . I 3 AN9 1 42 2 AN9 AN4 B . J 6 HOH 1 42 5 HOH HOH A . J 6 HOH 2 43 9 HOH HOH A . J 6 HOH 3 44 14 HOH HOH A . J 6 HOH 4 45 16 HOH HOH A . J 6 HOH 5 46 18 HOH HOH A . J 6 HOH 6 47 19 HOH HOH A . J 6 HOH 7 48 24 HOH HOH A . J 6 HOH 8 49 25 HOH HOH A . J 6 HOH 9 50 26 HOH HOH A . J 6 HOH 10 51 29 HOH HOH A . J 6 HOH 11 52 30 HOH HOH A . J 6 HOH 12 53 31 HOH HOH A . K 6 HOH 1 43 2 HOH HOH B . K 6 HOH 2 44 3 HOH HOH B . K 6 HOH 3 45 4 HOH HOH B . K 6 HOH 4 46 7 HOH HOH B . K 6 HOH 5 47 8 HOH HOH B . K 6 HOH 6 48 10 HOH HOH B . K 6 HOH 7 49 11 HOH HOH B . K 6 HOH 8 50 12 HOH HOH B . K 6 HOH 9 51 15 HOH HOH B . K 6 HOH 10 52 17 HOH HOH B . K 6 HOH 11 53 20 HOH HOH B . K 6 HOH 12 54 21 HOH HOH B . K 6 HOH 13 55 22 HOH HOH B . K 6 HOH 14 56 23 HOH HOH B . K 6 HOH 15 57 27 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A DC 1 ? "O5'" ? A DC 1 "O5'" 2 1 Y 1 A DC 1 ? "C5'" ? A DC 1 "C5'" 3 1 Y 1 A DC 1 ? "C4'" ? A DC 1 "C4'" 4 1 Y 1 A DC 1 ? "O4'" ? A DC 1 "O4'" 5 1 Y 1 A DC 1 ? "C3'" ? A DC 1 "C3'" 6 1 Y 1 A DC 1 ? "C2'" ? A DC 1 "C2'" 7 1 Y 1 A DC 1 ? "C1'" ? A DC 1 "C1'" 8 1 Y 1 A DC 1 ? N1 ? A DC 1 N1 9 1 Y 1 A DC 1 ? C2 ? A DC 1 C2 10 1 Y 1 A DC 1 ? O2 ? A DC 1 O2 11 1 Y 1 A DC 1 ? N3 ? A DC 1 N3 12 1 Y 1 A DC 1 ? C4 ? A DC 1 C4 13 1 Y 1 A DC 1 ? N4 ? A DC 1 N4 14 1 Y 1 A DC 1 ? C5 ? A DC 1 C5 15 1 Y 1 A DC 1 ? C6 ? A DC 1 C6 16 1 N 1 A AN9 41 ? C5 ? E AN9 1 C5 17 1 N 1 A AN9 41 ? O1 ? E AN9 1 O1 18 1 N 1 A AN9 41 ? C15 ? E AN9 1 C15 19 1 N 1 A AN9 41 ? C16 ? E AN9 1 C16 20 1 N 1 A AN9 41 ? N1 ? E AN9 1 N1 21 1 N 1 A AN9 41 ? C17 ? E AN9 1 C17 22 1 N 1 A AN9 41 ? C19 ? E AN9 1 C19 23 1 N 1 A AN9 41 ? C21 ? E AN9 1 C21 24 1 N 1 A AN9 41 ? C22 ? E AN9 1 C22 25 1 N 1 A AN9 41 ? C23 ? E AN9 1 C23 26 1 N 1 A AN9 41 ? N2 ? E AN9 1 N2 27 1 N 1 A AN9 41 ? C24 ? E AN9 1 C24 28 1 N 1 A AN9 41 ? C25 ? E AN9 1 C25 29 1 N 1 A AN9 41 ? C26 ? E AN9 1 C26 30 1 N 1 A AN9 41 ? C27 ? E AN9 1 C27 31 1 N 1 B AN9 42 ? C5 ? I AN9 1 C5 32 1 N 1 B AN9 42 ? O1 ? I AN9 1 O1 33 1 N 1 B AN9 42 ? C15 ? I AN9 1 C15 34 1 N 1 B AN9 42 ? C16 ? I AN9 1 C16 35 1 N 1 B AN9 42 ? N1 ? I AN9 1 N1 36 1 N 1 B AN9 42 ? C17 ? I AN9 1 C17 37 1 N 1 B AN9 42 ? C19 ? I AN9 1 C19 38 1 N 1 B AN9 42 ? C21 ? I AN9 1 C21 39 1 N 1 B AN9 42 ? C22 ? I AN9 1 C22 40 1 N 1 B AN9 42 ? C23 ? I AN9 1 C23 41 1 N 1 B AN9 42 ? N2 ? I AN9 1 N2 42 1 N 1 B AN9 42 ? C24 ? I AN9 1 C24 43 1 N 1 B AN9 42 ? C25 ? I AN9 1 C25 44 1 N 1 B AN9 42 ? C26 ? I AN9 1 C26 45 1 N 1 B AN9 42 ? C27 ? I AN9 1 C27 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 # _cell.entry_id 1XCU _cell.length_a 29.056 _cell.length_b 52.856 _cell.length_c 40.084 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XCU _symmetry.space_group_name_H-M 'C 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1XCU _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.13 _exptl_crystal.density_percent_sol 42.16 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details 'drug, barium chloride, cobalt chloride, MPD, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 drug ? ? ? 1 2 1 'barium chloride' ? ? ? 1 3 1 'cobalt choloride' ? ? ? 1 4 1 MPD ? ? ? 1 5 2 drug ? ? ? 1 6 2 'barium chloride' ? ? ? 1 7 2 'cobalt choloride' ? ? ? 1 8 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 120 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.79986 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM14' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM14 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.79986 # _reflns.entry_id 1XCU _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.0 _reflns.d_resolution_low 25 _reflns.number_all ? _reflns.number_obs 2190 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.035 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 16.4 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.0 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs 0.101 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1XCU _refine.ls_number_reflns_obs 1984 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 96.18 _refine.ls_R_factor_obs 0.21683 _refine.ls_R_factor_all 0.2168 _refine.ls_R_factor_R_work 0.21299 _refine.ls_R_factor_R_free 0.25162 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.4 _refine.ls_number_reflns_R_free 205 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.937 _refine.correlation_coeff_Fo_to_Fc_free 0.943 _refine.B_iso_mean 39.494 _refine.aniso_B[1][1] 1.20 _refine.aniso_B[2][2] -2.25 _refine.aniso_B[3][3] 1.05 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.278 _refine.pdbx_overall_ESU_R_Free 0.205 _refine.overall_SU_ML 0.152 _refine.overall_SU_B 5.247 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 225 _refine_hist.pdbx_number_atoms_ligand 47 _refine_hist.number_atoms_solvent 28 _refine_hist.number_atoms_total 300 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 25 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.013 0.021 ? 307 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.127 3.000 ? 453 'X-RAY DIFFRACTION' ? r_chiral_restr 0.082 0.200 ? 33 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.011 0.020 ? 161 'X-RAY DIFFRACTION' ? r_nbd_refined 0.200 0.200 ? 74 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.219 0.200 ? 19 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.128 0.200 ? 1 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.211 0.200 ? 84 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.190 0.200 ? 18 'X-RAY DIFFRACTION' ? r_mcbond_it 1.939 1.500 ? 5 'X-RAY DIFFRACTION' ? r_scbond_it 2.280 3.000 ? 298 'X-RAY DIFFRACTION' ? r_scangle_it 2.969 4.500 ? 453 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.997 _refine_ls_shell.d_res_low 2.048 _refine_ls_shell.number_reflns_R_work 116 _refine_ls_shell.R_factor_R_work 0.193 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.259 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 9 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1XCU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1XCU _struct.title 'oligonucleotid/drug complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1XCU _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DRUG-DNA COMPLEX, ANTHRAQUINONE, CO2+, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 2 ? G N N 4 ? H N N 5 ? I N N 3 ? J N N 6 ? K N N 6 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1XCU _struct_ref.pdbx_db_accession 1XCU _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1XCU A 1 ? 6 ? 1XCU 1 ? 6 ? 1 6 2 1 1XCU B 1 ? 6 ? 1XCU 7 ? 12 ? 7 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 2 N7 ? ? ? 1_555 C CO . CO ? ? A DG 2 A CO 33 1_555 ? ? ? ? ? ? ? 2.272 ? ? metalc2 metalc ? ? A DG 6 OP1 ? ? ? 1_555 D CO . CO ? ? A DG 6 A CO 35 1_555 ? ? ? ? ? ? ? 2.139 ? ? metalc3 metalc ? ? C CO . CO ? ? ? 1_555 J HOH . O ? ? A CO 33 A HOH 43 1_555 ? ? ? ? ? ? ? 2.173 ? ? metalc4 metalc ? ? C CO . CO ? ? ? 1_555 J HOH . O ? ? A CO 33 A HOH 48 1_555 ? ? ? ? ? ? ? 2.212 ? ? metalc5 metalc ? ? C CO . CO ? ? ? 1_555 J HOH . O ? ? A CO 33 A HOH 49 1_555 ? ? ? ? ? ? ? 2.183 ? ? metalc6 metalc ? ? C CO . CO ? ? ? 1_555 J HOH . O ? ? A CO 33 A HOH 51 1_555 ? ? ? ? ? ? ? 2.215 ? ? metalc7 metalc ? ? C CO . CO ? ? ? 1_555 J HOH . O ? ? A CO 33 A HOH 52 1_555 ? ? ? ? ? ? ? 2.197 ? ? metalc8 metalc ? ? D CO . CO ? ? ? 1_555 J HOH . O ? ? A CO 35 A HOH 53 1_555 ? ? ? ? ? ? ? 1.940 ? ? metalc9 metalc ? ? D CO . CO ? ? ? 1_555 J HOH . O ? ? A CO 35 A HOH 53 2_655 ? ? ? ? ? ? ? 1.858 ? ? metalc10 metalc ? ? D CO . CO ? ? ? 1_555 J HOH . O ? ? A CO 35 A HOH 53 3_655 ? ? ? ? ? ? ? 2.585 ? ? metalc11 metalc ? ? D CO . CO ? ? ? 1_555 J HOH . O ? ? A CO 35 A HOH 53 4_555 ? ? ? ? ? ? ? 1.539 ? ? metalc12 metalc ? ? B DG 6 N7 ? ? ? 1_555 F CO . CO ? ? B DG 12 B CO 32 1_555 ? ? ? ? ? ? ? 2.233 ? ? metalc13 metalc ? ? B DG 6 N7 ? ? ? 3_755 F CO . CO ? ? B DG 12 B CO 32 1_555 ? ? ? ? ? ? ? 2.241 ? ? metalc14 metalc ? ? B DG 6 O6 ? ? ? 1_555 G BA . BA ? ? B DG 12 B BA 34 1_555 ? ? ? ? ? ? ? 2.648 ? ? metalc15 metalc ? ? B DG 6 O6 ? ? ? 3_755 G BA . BA ? ? B DG 12 B BA 34 1_555 ? ? ? ? ? ? ? 2.650 ? ? metalc16 metalc ? ? F CO . CO ? ? ? 1_555 K HOH . O ? ? B CO 32 B HOH 46 1_555 ? ? ? ? ? ? ? 2.072 ? ? metalc17 metalc ? ? F CO . CO ? ? ? 1_555 K HOH . O ? ? B CO 32 B HOH 46 3_755 ? ? ? ? ? ? ? 2.074 ? ? metalc18 metalc ? ? F CO . CO ? ? ? 1_555 K HOH . O ? ? B CO 32 B HOH 49 1_555 ? ? ? ? ? ? ? 2.023 ? ? metalc19 metalc ? ? F CO . CO ? ? ? 1_555 K HOH . O ? ? B CO 32 B HOH 49 3_755 ? ? ? ? ? ? ? 2.024 ? ? metalc20 metalc ? ? G BA . BA ? ? ? 1_555 K HOH . O ? ? B BA 34 B HOH 49 1_555 ? ? ? ? ? ? ? 3.311 ? ? metalc21 metalc ? ? G BA . BA ? ? ? 1_555 K HOH . O ? ? B BA 34 B HOH 49 3_755 ? ? ? ? ? ? ? 3.309 ? ? metalc22 metalc ? ? G BA . BA ? ? ? 1_555 K HOH . O ? ? B BA 34 B HOH 57 1_555 ? ? ? ? ? ? ? 2.829 ? ? metalc23 metalc ? ? G BA . BA ? ? ? 1_555 K HOH . O ? ? B BA 34 B HOH 57 3_755 ? ? ? ? ? ? ? 2.832 ? ? hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 3 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 3 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 2 ? A DG 2 ? 1_555 CO ? C CO . ? A CO 33 ? 1_555 O ? J HOH . ? A HOH 43 ? 1_555 81.4 ? 2 N7 ? A DG 2 ? A DG 2 ? 1_555 CO ? C CO . ? A CO 33 ? 1_555 O ? J HOH . ? A HOH 48 ? 1_555 85.0 ? 3 O ? J HOH . ? A HOH 43 ? 1_555 CO ? C CO . ? A CO 33 ? 1_555 O ? J HOH . ? A HOH 48 ? 1_555 82.5 ? 4 N7 ? A DG 2 ? A DG 2 ? 1_555 CO ? C CO . ? A CO 33 ? 1_555 O ? J HOH . ? A HOH 49 ? 1_555 99.4 ? 5 O ? J HOH . ? A HOH 43 ? 1_555 CO ? C CO . ? A CO 33 ? 1_555 O ? J HOH . ? A HOH 49 ? 1_555 101.0 ? 6 O ? J HOH . ? A HOH 48 ? 1_555 CO ? C CO . ? A CO 33 ? 1_555 O ? J HOH . ? A HOH 49 ? 1_555 174.8 ? 7 N7 ? A DG 2 ? A DG 2 ? 1_555 CO ? C CO . ? A CO 33 ? 1_555 O ? J HOH . ? A HOH 51 ? 1_555 178.0 ? 8 O ? J HOH . ? A HOH 43 ? 1_555 CO ? C CO . ? A CO 33 ? 1_555 O ? J HOH . ? A HOH 51 ? 1_555 100.5 ? 9 O ? J HOH . ? A HOH 48 ? 1_555 CO ? C CO . ? A CO 33 ? 1_555 O ? J HOH . ? A HOH 51 ? 1_555 94.6 ? 10 O ? J HOH . ? A HOH 49 ? 1_555 CO ? C CO . ? A CO 33 ? 1_555 O ? J HOH . ? A HOH 51 ? 1_555 81.0 ? 11 N7 ? A DG 2 ? A DG 2 ? 1_555 CO ? C CO . ? A CO 33 ? 1_555 O ? J HOH . ? A HOH 52 ? 1_555 96.1 ? 12 O ? J HOH . ? A HOH 43 ? 1_555 CO ? C CO . ? A CO 33 ? 1_555 O ? J HOH . ? A HOH 52 ? 1_555 175.3 ? 13 O ? J HOH . ? A HOH 48 ? 1_555 CO ? C CO . ? A CO 33 ? 1_555 O ? J HOH . ? A HOH 52 ? 1_555 93.3 ? 14 O ? J HOH . ? A HOH 49 ? 1_555 CO ? C CO . ? A CO 33 ? 1_555 O ? J HOH . ? A HOH 52 ? 1_555 83.3 ? 15 O ? J HOH . ? A HOH 51 ? 1_555 CO ? C CO . ? A CO 33 ? 1_555 O ? J HOH . ? A HOH 52 ? 1_555 82.0 ? 16 OP1 ? A DG 6 ? A DG 6 ? 1_555 CO ? D CO . ? A CO 35 ? 1_555 O ? J HOH . ? A HOH 53 ? 1_555 68.3 ? 17 OP1 ? A DG 6 ? A DG 6 ? 1_555 CO ? D CO . ? A CO 35 ? 1_555 O ? J HOH . ? A HOH 53 ? 2_655 159.6 ? 18 O ? J HOH . ? A HOH 53 ? 1_555 CO ? D CO . ? A CO 35 ? 1_555 O ? J HOH . ? A HOH 53 ? 2_655 103.9 ? 19 OP1 ? A DG 6 ? A DG 6 ? 1_555 CO ? D CO . ? A CO 35 ? 1_555 O ? J HOH . ? A HOH 53 ? 3_655 132.7 ? 20 O ? J HOH . ? A HOH 53 ? 1_555 CO ? D CO . ? A CO 35 ? 1_555 O ? J HOH . ? A HOH 53 ? 3_655 72.5 ? 21 O ? J HOH . ? A HOH 53 ? 2_655 CO ? D CO . ? A CO 35 ? 1_555 O ? J HOH . ? A HOH 53 ? 3_655 32.2 ? 22 OP1 ? A DG 6 ? A DG 6 ? 1_555 CO ? D CO . ? A CO 35 ? 1_555 O ? J HOH . ? A HOH 53 ? 4_555 82.3 ? 23 O ? J HOH . ? A HOH 53 ? 1_555 CO ? D CO . ? A CO 35 ? 1_555 O ? J HOH . ? A HOH 53 ? 4_555 46.3 ? 24 O ? J HOH . ? A HOH 53 ? 2_655 CO ? D CO . ? A CO 35 ? 1_555 O ? J HOH . ? A HOH 53 ? 4_555 106.2 ? 25 O ? J HOH . ? A HOH 53 ? 3_655 CO ? D CO . ? A CO 35 ? 1_555 O ? J HOH . ? A HOH 53 ? 4_555 89.3 ? 26 N7 ? B DG 6 ? B DG 12 ? 1_555 CO ? F CO . ? B CO 32 ? 1_555 N7 ? B DG 6 ? B DG 12 ? 3_755 178.5 ? 27 N7 ? B DG 6 ? B DG 12 ? 1_555 CO ? F CO . ? B CO 32 ? 1_555 O ? K HOH . ? B HOH 46 ? 1_555 86.0 ? 28 N7 ? B DG 6 ? B DG 12 ? 3_755 CO ? F CO . ? B CO 32 ? 1_555 O ? K HOH . ? B HOH 46 ? 1_555 92.8 ? 29 N7 ? B DG 6 ? B DG 12 ? 1_555 CO ? F CO . ? B CO 32 ? 1_555 O ? K HOH . ? B HOH 46 ? 3_755 93.0 ? 30 N7 ? B DG 6 ? B DG 12 ? 3_755 CO ? F CO . ? B CO 32 ? 1_555 O ? K HOH . ? B HOH 46 ? 3_755 85.8 ? 31 O ? K HOH . ? B HOH 46 ? 1_555 CO ? F CO . ? B CO 32 ? 1_555 O ? K HOH . ? B HOH 46 ? 3_755 71.2 ? 32 N7 ? B DG 6 ? B DG 12 ? 1_555 CO ? F CO . ? B CO 32 ? 1_555 O ? K HOH . ? B HOH 49 ? 1_555 97.1 ? 33 N7 ? B DG 6 ? B DG 12 ? 3_755 CO ? F CO . ? B CO 32 ? 1_555 O ? K HOH . ? B HOH 49 ? 1_555 83.9 ? 34 O ? K HOH . ? B HOH 46 ? 1_555 CO ? F CO . ? B CO 32 ? 1_555 O ? K HOH . ? B HOH 49 ? 1_555 93.5 ? 35 O ? K HOH . ? B HOH 46 ? 3_755 CO ? F CO . ? B CO 32 ? 1_555 O ? K HOH . ? B HOH 49 ? 1_555 161.1 ? 36 N7 ? B DG 6 ? B DG 12 ? 1_555 CO ? F CO . ? B CO 32 ? 1_555 O ? K HOH . ? B HOH 49 ? 3_755 84.1 ? 37 N7 ? B DG 6 ? B DG 12 ? 3_755 CO ? F CO . ? B CO 32 ? 1_555 O ? K HOH . ? B HOH 49 ? 3_755 96.8 ? 38 O ? K HOH . ? B HOH 46 ? 1_555 CO ? F CO . ? B CO 32 ? 1_555 O ? K HOH . ? B HOH 49 ? 3_755 161.2 ? 39 O ? K HOH . ? B HOH 46 ? 3_755 CO ? F CO . ? B CO 32 ? 1_555 O ? K HOH . ? B HOH 49 ? 3_755 93.4 ? 40 O ? K HOH . ? B HOH 49 ? 1_555 CO ? F CO . ? B CO 32 ? 1_555 O ? K HOH . ? B HOH 49 ? 3_755 103.5 ? 41 O6 ? B DG 6 ? B DG 12 ? 1_555 BA ? G BA . ? B BA 34 ? 1_555 O6 ? B DG 6 ? B DG 12 ? 3_755 126.5 ? 42 O6 ? B DG 6 ? B DG 12 ? 1_555 BA ? G BA . ? B BA 34 ? 1_555 O ? K HOH . ? B HOH 49 ? 1_555 63.9 ? 43 O6 ? B DG 6 ? B DG 12 ? 3_755 BA ? G BA . ? B BA 34 ? 1_555 O ? K HOH . ? B HOH 49 ? 1_555 69.5 ? 44 O6 ? B DG 6 ? B DG 12 ? 1_555 BA ? G BA . ? B BA 34 ? 1_555 O ? K HOH . ? B HOH 49 ? 3_755 69.5 ? 45 O6 ? B DG 6 ? B DG 12 ? 3_755 BA ? G BA . ? B BA 34 ? 1_555 O ? K HOH . ? B HOH 49 ? 3_755 63.9 ? 46 O ? K HOH . ? B HOH 49 ? 1_555 BA ? G BA . ? B BA 34 ? 1_555 O ? K HOH . ? B HOH 49 ? 3_755 57.4 ? 47 O6 ? B DG 6 ? B DG 12 ? 1_555 BA ? G BA . ? B BA 34 ? 1_555 O ? K HOH . ? B HOH 57 ? 1_555 80.2 ? 48 O6 ? B DG 6 ? B DG 12 ? 3_755 BA ? G BA . ? B BA 34 ? 1_555 O ? K HOH . ? B HOH 57 ? 1_555 146.3 ? 49 O ? K HOH . ? B HOH 49 ? 1_555 BA ? G BA . ? B BA 34 ? 1_555 O ? K HOH . ? B HOH 57 ? 1_555 143.0 ? 50 O ? K HOH . ? B HOH 49 ? 3_755 BA ? G BA . ? B BA 34 ? 1_555 O ? K HOH . ? B HOH 57 ? 1_555 119.5 ? 51 O6 ? B DG 6 ? B DG 12 ? 1_555 BA ? G BA . ? B BA 34 ? 1_555 O ? K HOH . ? B HOH 57 ? 3_755 146.3 ? 52 O6 ? B DG 6 ? B DG 12 ? 3_755 BA ? G BA . ? B BA 34 ? 1_555 O ? K HOH . ? B HOH 57 ? 3_755 80.1 ? 53 O ? K HOH . ? B HOH 49 ? 1_555 BA ? G BA . ? B BA 34 ? 1_555 O ? K HOH . ? B HOH 57 ? 3_755 119.3 ? 54 O ? K HOH . ? B HOH 49 ? 3_755 BA ? G BA . ? B BA 34 ? 1_555 O ? K HOH . ? B HOH 57 ? 3_755 142.9 ? 55 O ? K HOH . ? B HOH 57 ? 1_555 BA ? G BA . ? B BA 34 ? 1_555 O ? K HOH . ? B HOH 57 ? 3_755 85.5 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B CO 32 ? 3 'BINDING SITE FOR RESIDUE CO B 32' AC2 Software A CO 33 ? 6 'BINDING SITE FOR RESIDUE CO A 33' AC3 Software B BA 34 ? 2 'BINDING SITE FOR RESIDUE BA B 34' AC4 Software A CO 35 ? 4 'BINDING SITE FOR RESIDUE CO A 35' AC5 Software B NA 36 ? 2 'BINDING SITE FOR RESIDUE NA B 36' AC6 Software A AN9 41 ? 4 'BINDING SITE FOR RESIDUE AN9 A 41' AC7 Software B AN9 42 ? 5 'BINDING SITE FOR RESIDUE AN9 B 42' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 DG B 6 ? DG B 12 . ? 1_555 ? 2 AC1 3 HOH K . ? HOH B 46 . ? 1_555 ? 3 AC1 3 HOH K . ? HOH B 49 . ? 1_555 ? 4 AC2 6 DG A 2 ? DG A 2 . ? 1_555 ? 5 AC2 6 HOH J . ? HOH A 43 . ? 1_555 ? 6 AC2 6 HOH J . ? HOH A 48 . ? 1_555 ? 7 AC2 6 HOH J . ? HOH A 49 . ? 1_555 ? 8 AC2 6 HOH J . ? HOH A 51 . ? 1_555 ? 9 AC2 6 HOH J . ? HOH A 52 . ? 1_555 ? 10 AC3 2 DG B 6 ? DG B 12 . ? 3_755 ? 11 AC3 2 HOH K . ? HOH B 57 . ? 3_755 ? 12 AC4 4 DC A 5 ? DC A 5 . ? 1_555 ? 13 AC4 4 DG A 6 ? DG A 6 . ? 2_655 ? 14 AC4 4 HOH J . ? HOH A 44 . ? 2_655 ? 15 AC4 4 HOH J . ? HOH A 53 . ? 3_655 ? 16 AC5 2 DG B 2 ? DG B 8 . ? 1_555 ? 17 AC5 2 AN9 I . ? AN9 B 42 . ? 2_655 ? 18 AC6 4 DC A 5 ? DC A 5 . ? 1_555 ? 19 AC6 4 DG A 6 ? DG A 6 . ? 2_655 ? 20 AC6 4 DC B 1 ? DC B 7 . ? 4_556 ? 21 AC6 4 DG B 2 ? DG B 8 . ? 1_555 ? 22 AC7 5 DC A 5 ? DC A 5 . ? 2_655 ? 23 AC7 5 DG A 6 ? DG A 6 . ? 2_655 ? 24 AC7 5 DC B 1 ? DC B 7 . ? 4_556 ? 25 AC7 5 DG B 2 ? DG B 8 . ? 1_555 ? 26 AC7 5 NA H . ? NA B 36 . ? 4_556 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 53 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 54 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 101.06 108.00 -6.94 0.70 N 2 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.24 108.30 1.94 0.30 N 3 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 102.33 108.00 -5.67 0.70 N 4 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 110.16 108.30 1.86 0.30 N 5 1 "O4'" B DT 9 ? ? "C1'" B DT 9 ? ? N1 B DT 9 ? ? 111.07 108.30 2.77 0.30 N 6 1 C4 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 123.20 119.00 4.20 0.60 N 7 1 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.30 122.90 -4.60 0.60 N 8 1 "O4'" B DA 10 ? ? "C1'" B DA 10 ? ? N9 B DA 10 ? ? 103.34 108.00 -4.66 0.70 N 9 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? "C2'" B DC 11 ? ? 100.36 105.90 -5.54 0.80 N # _struct_site_keywords.site_id 1 _struct_site_keywords.text INTERCALATION # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A AN9 41 ? E AN9 . 2 1 B CO 32 ? F CO . 3 1 B BA 34 ? G BA . 4 1 B NA 36 ? H NA . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AN9 O19 O N N 1 AN9 C18 C N N 2 AN9 C20 C N N 3 AN9 N17 N N N 4 AN9 C14 C Y N 5 AN9 C13 C Y N 6 AN9 C12 C Y N 7 AN9 C3 C Y N 8 AN9 C2 C Y N 9 AN9 C37 C Y N 10 AN9 C1 C N N 11 AN9 O15 O N N 12 AN9 C6 C Y N 13 AN9 C11 C Y N 14 AN9 C10 C Y N 15 AN9 C4 C N N 16 AN9 O16 O N N 17 AN9 C7 C Y N 18 AN9 N27 N N N 19 AN9 C8 C Y N 20 AN9 C9 C Y N 21 AN9 C5 C N N 22 AN9 O1 O N N 23 AN9 C15 C N N 24 AN9 C16 C N N 25 AN9 N1 N N N 26 AN9 C17 C N N 27 AN9 C19 C N N 28 AN9 C21 C N N 29 AN9 C22 C N N 30 AN9 C23 C N N 31 AN9 N2 N N N 32 AN9 C24 C N N 33 AN9 C25 C N N 34 AN9 C26 C N N 35 AN9 C27 C N N 36 AN9 H201 H N N 37 AN9 H202 H N N 38 AN9 H17 H N N 39 AN9 H13 H N N 40 AN9 H12 H N N 41 AN9 H37 H N N 42 AN9 H10 H N N 43 AN9 H27 H N N 44 AN9 H8 H N N 45 AN9 H9 H N N 46 AN9 H151 H N N 47 AN9 H152 H N N 48 AN9 H161 H N N 49 AN9 H162 H N N 50 AN9 H171 H N N 51 AN9 H172 H N N 52 AN9 H191 H N N 53 AN9 H192 H N N 54 AN9 H193 H N N 55 AN9 H211 H N N 56 AN9 H212 H N N 57 AN9 H221 H N N 58 AN9 H222 H N N 59 AN9 H223 H N N 60 AN9 H231 H N N 61 AN9 H232 H N N 62 AN9 H241 H N N 63 AN9 H242 H N N 64 AN9 H251 H N N 65 AN9 H252 H N N 66 AN9 H253 H N N 67 AN9 H261 H N N 68 AN9 H262 H N N 69 AN9 H271 H N N 70 AN9 H272 H N N 71 AN9 H273 H N N 72 BA BA BA N N 73 CO CO CO N N 74 DA OP3 O N N 75 DA P P N N 76 DA OP1 O N N 77 DA OP2 O N N 78 DA "O5'" O N N 79 DA "C5'" C N N 80 DA "C4'" C N R 81 DA "O4'" O N N 82 DA "C3'" C N S 83 DA "O3'" O N N 84 DA "C2'" C N N 85 DA "C1'" C N R 86 DA N9 N Y N 87 DA C8 C Y N 88 DA N7 N Y N 89 DA C5 C Y N 90 DA C6 C Y N 91 DA N6 N N N 92 DA N1 N Y N 93 DA C2 C Y N 94 DA N3 N Y N 95 DA C4 C Y N 96 DA HOP3 H N N 97 DA HOP2 H N N 98 DA "H5'" H N N 99 DA "H5''" H N N 100 DA "H4'" H N N 101 DA "H3'" H N N 102 DA "HO3'" H N N 103 DA "H2'" H N N 104 DA "H2''" H N N 105 DA "H1'" H N N 106 DA H8 H N N 107 DA H61 H N N 108 DA H62 H N N 109 DA H2 H N N 110 DC OP3 O N N 111 DC P P N N 112 DC OP1 O N N 113 DC OP2 O N N 114 DC "O5'" O N N 115 DC "C5'" C N N 116 DC "C4'" C N R 117 DC "O4'" O N N 118 DC "C3'" C N S 119 DC "O3'" O N N 120 DC "C2'" C N N 121 DC "C1'" C N R 122 DC N1 N N N 123 DC C2 C N N 124 DC O2 O N N 125 DC N3 N N N 126 DC C4 C N N 127 DC N4 N N N 128 DC C5 C N N 129 DC C6 C N N 130 DC HOP3 H N N 131 DC HOP2 H N N 132 DC "H5'" H N N 133 DC "H5''" H N N 134 DC "H4'" H N N 135 DC "H3'" H N N 136 DC "HO3'" H N N 137 DC "H2'" H N N 138 DC "H2''" H N N 139 DC "H1'" H N N 140 DC H41 H N N 141 DC H42 H N N 142 DC H5 H N N 143 DC H6 H N N 144 DG OP3 O N N 145 DG P P N N 146 DG OP1 O N N 147 DG OP2 O N N 148 DG "O5'" O N N 149 DG "C5'" C N N 150 DG "C4'" C N R 151 DG "O4'" O N N 152 DG "C3'" C N S 153 DG "O3'" O N N 154 DG "C2'" C N N 155 DG "C1'" C N R 156 DG N9 N Y N 157 DG C8 C Y N 158 DG N7 N Y N 159 DG C5 C Y N 160 DG C6 C N N 161 DG O6 O N N 162 DG N1 N N N 163 DG C2 C N N 164 DG N2 N N N 165 DG N3 N N N 166 DG C4 C Y N 167 DG HOP3 H N N 168 DG HOP2 H N N 169 DG "H5'" H N N 170 DG "H5''" H N N 171 DG "H4'" H N N 172 DG "H3'" H N N 173 DG "HO3'" H N N 174 DG "H2'" H N N 175 DG "H2''" H N N 176 DG "H1'" H N N 177 DG H8 H N N 178 DG H1 H N N 179 DG H21 H N N 180 DG H22 H N N 181 DT OP3 O N N 182 DT P P N N 183 DT OP1 O N N 184 DT OP2 O N N 185 DT "O5'" O N N 186 DT "C5'" C N N 187 DT "C4'" C N R 188 DT "O4'" O N N 189 DT "C3'" C N S 190 DT "O3'" O N N 191 DT "C2'" C N N 192 DT "C1'" C N R 193 DT N1 N N N 194 DT C2 C N N 195 DT O2 O N N 196 DT N3 N N N 197 DT C4 C N N 198 DT O4 O N N 199 DT C5 C N N 200 DT C7 C N N 201 DT C6 C N N 202 DT HOP3 H N N 203 DT HOP2 H N N 204 DT "H5'" H N N 205 DT "H5''" H N N 206 DT "H4'" H N N 207 DT "H3'" H N N 208 DT "HO3'" H N N 209 DT "H2'" H N N 210 DT "H2''" H N N 211 DT "H1'" H N N 212 DT H3 H N N 213 DT H71 H N N 214 DT H72 H N N 215 DT H73 H N N 216 DT H6 H N N 217 HOH O O N N 218 HOH H1 H N N 219 HOH H2 H N N 220 NA NA NA N N 221 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AN9 O19 C18 doub N N 1 AN9 C18 C20 sing N N 2 AN9 C18 N17 sing N N 3 AN9 C20 C23 sing N N 4 AN9 C20 H201 sing N N 5 AN9 C20 H202 sing N N 6 AN9 N17 C14 sing N N 7 AN9 N17 H17 sing N N 8 AN9 C14 C13 doub Y N 9 AN9 C14 C3 sing Y N 10 AN9 C13 C12 sing Y N 11 AN9 C13 H13 sing N N 12 AN9 C12 C37 doub Y N 13 AN9 C12 H12 sing N N 14 AN9 C3 C2 doub Y N 15 AN9 C3 C4 sing N N 16 AN9 C2 C37 sing Y N 17 AN9 C2 C1 sing N N 18 AN9 C37 H37 sing N N 19 AN9 C1 O15 doub N N 20 AN9 C1 C6 sing N N 21 AN9 C6 C11 doub Y N 22 AN9 C6 C7 sing Y N 23 AN9 C11 C10 sing Y N 24 AN9 C11 C4 sing N N 25 AN9 C10 C9 doub Y N 26 AN9 C10 H10 sing N N 27 AN9 C4 O16 doub N N 28 AN9 C7 N27 sing N N 29 AN9 C7 C8 doub Y N 30 AN9 N27 C5 sing N N 31 AN9 N27 H27 sing N N 32 AN9 C8 C9 sing Y N 33 AN9 C8 H8 sing N N 34 AN9 C9 H9 sing N N 35 AN9 C5 O1 doub N N 36 AN9 C5 C15 sing N N 37 AN9 C15 C16 sing N N 38 AN9 C15 H151 sing N N 39 AN9 C15 H152 sing N N 40 AN9 C16 N1 sing N N 41 AN9 C16 H161 sing N N 42 AN9 C16 H162 sing N N 43 AN9 N1 C17 sing N N 44 AN9 N1 C21 sing N N 45 AN9 C17 C19 sing N N 46 AN9 C17 H171 sing N N 47 AN9 C17 H172 sing N N 48 AN9 C19 H191 sing N N 49 AN9 C19 H192 sing N N 50 AN9 C19 H193 sing N N 51 AN9 C21 C22 sing N N 52 AN9 C21 H211 sing N N 53 AN9 C21 H212 sing N N 54 AN9 C22 H221 sing N N 55 AN9 C22 H222 sing N N 56 AN9 C22 H223 sing N N 57 AN9 C23 N2 sing N N 58 AN9 C23 H231 sing N N 59 AN9 C23 H232 sing N N 60 AN9 N2 C24 sing N N 61 AN9 N2 C26 sing N N 62 AN9 C24 C25 sing N N 63 AN9 C24 H241 sing N N 64 AN9 C24 H242 sing N N 65 AN9 C25 H251 sing N N 66 AN9 C25 H252 sing N N 67 AN9 C25 H253 sing N N 68 AN9 C26 C27 sing N N 69 AN9 C26 H261 sing N N 70 AN9 C26 H262 sing N N 71 AN9 C27 H271 sing N N 72 AN9 C27 H272 sing N N 73 AN9 C27 H273 sing N N 74 DA OP3 P sing N N 75 DA OP3 HOP3 sing N N 76 DA P OP1 doub N N 77 DA P OP2 sing N N 78 DA P "O5'" sing N N 79 DA OP2 HOP2 sing N N 80 DA "O5'" "C5'" sing N N 81 DA "C5'" "C4'" sing N N 82 DA "C5'" "H5'" sing N N 83 DA "C5'" "H5''" sing N N 84 DA "C4'" "O4'" sing N N 85 DA "C4'" "C3'" sing N N 86 DA "C4'" "H4'" sing N N 87 DA "O4'" "C1'" sing N N 88 DA "C3'" "O3'" sing N N 89 DA "C3'" "C2'" sing N N 90 DA "C3'" "H3'" sing N N 91 DA "O3'" "HO3'" sing N N 92 DA "C2'" "C1'" sing N N 93 DA "C2'" "H2'" sing N N 94 DA "C2'" "H2''" sing N N 95 DA "C1'" N9 sing N N 96 DA "C1'" "H1'" sing N N 97 DA N9 C8 sing Y N 98 DA N9 C4 sing Y N 99 DA C8 N7 doub Y N 100 DA C8 H8 sing N N 101 DA N7 C5 sing Y N 102 DA C5 C6 sing Y N 103 DA C5 C4 doub Y N 104 DA C6 N6 sing N N 105 DA C6 N1 doub Y N 106 DA N6 H61 sing N N 107 DA N6 H62 sing N N 108 DA N1 C2 sing Y N 109 DA C2 N3 doub Y N 110 DA C2 H2 sing N N 111 DA N3 C4 sing Y N 112 DC OP3 P sing N N 113 DC OP3 HOP3 sing N N 114 DC P OP1 doub N N 115 DC P OP2 sing N N 116 DC P "O5'" sing N N 117 DC OP2 HOP2 sing N N 118 DC "O5'" "C5'" sing N N 119 DC "C5'" "C4'" sing N N 120 DC "C5'" "H5'" sing N N 121 DC "C5'" "H5''" sing N N 122 DC "C4'" "O4'" sing N N 123 DC "C4'" "C3'" sing N N 124 DC "C4'" "H4'" sing N N 125 DC "O4'" "C1'" sing N N 126 DC "C3'" "O3'" sing N N 127 DC "C3'" "C2'" sing N N 128 DC "C3'" "H3'" sing N N 129 DC "O3'" "HO3'" sing N N 130 DC "C2'" "C1'" sing N N 131 DC "C2'" "H2'" sing N N 132 DC "C2'" "H2''" sing N N 133 DC "C1'" N1 sing N N 134 DC "C1'" "H1'" sing N N 135 DC N1 C2 sing N N 136 DC N1 C6 sing N N 137 DC C2 O2 doub N N 138 DC C2 N3 sing N N 139 DC N3 C4 doub N N 140 DC C4 N4 sing N N 141 DC C4 C5 sing N N 142 DC N4 H41 sing N N 143 DC N4 H42 sing N N 144 DC C5 C6 doub N N 145 DC C5 H5 sing N N 146 DC C6 H6 sing N N 147 DG OP3 P sing N N 148 DG OP3 HOP3 sing N N 149 DG P OP1 doub N N 150 DG P OP2 sing N N 151 DG P "O5'" sing N N 152 DG OP2 HOP2 sing N N 153 DG "O5'" "C5'" sing N N 154 DG "C5'" "C4'" sing N N 155 DG "C5'" "H5'" sing N N 156 DG "C5'" "H5''" sing N N 157 DG "C4'" "O4'" sing N N 158 DG "C4'" "C3'" sing N N 159 DG "C4'" "H4'" sing N N 160 DG "O4'" "C1'" sing N N 161 DG "C3'" "O3'" sing N N 162 DG "C3'" "C2'" sing N N 163 DG "C3'" "H3'" sing N N 164 DG "O3'" "HO3'" sing N N 165 DG "C2'" "C1'" sing N N 166 DG "C2'" "H2'" sing N N 167 DG "C2'" "H2''" sing N N 168 DG "C1'" N9 sing N N 169 DG "C1'" "H1'" sing N N 170 DG N9 C8 sing Y N 171 DG N9 C4 sing Y N 172 DG C8 N7 doub Y N 173 DG C8 H8 sing N N 174 DG N7 C5 sing Y N 175 DG C5 C6 sing N N 176 DG C5 C4 doub Y N 177 DG C6 O6 doub N N 178 DG C6 N1 sing N N 179 DG N1 C2 sing N N 180 DG N1 H1 sing N N 181 DG C2 N2 sing N N 182 DG C2 N3 doub N N 183 DG N2 H21 sing N N 184 DG N2 H22 sing N N 185 DG N3 C4 sing N N 186 DT OP3 P sing N N 187 DT OP3 HOP3 sing N N 188 DT P OP1 doub N N 189 DT P OP2 sing N N 190 DT P "O5'" sing N N 191 DT OP2 HOP2 sing N N 192 DT "O5'" "C5'" sing N N 193 DT "C5'" "C4'" sing N N 194 DT "C5'" "H5'" sing N N 195 DT "C5'" "H5''" sing N N 196 DT "C4'" "O4'" sing N N 197 DT "C4'" "C3'" sing N N 198 DT "C4'" "H4'" sing N N 199 DT "O4'" "C1'" sing N N 200 DT "C3'" "O3'" sing N N 201 DT "C3'" "C2'" sing N N 202 DT "C3'" "H3'" sing N N 203 DT "O3'" "HO3'" sing N N 204 DT "C2'" "C1'" sing N N 205 DT "C2'" "H2'" sing N N 206 DT "C2'" "H2''" sing N N 207 DT "C1'" N1 sing N N 208 DT "C1'" "H1'" sing N N 209 DT N1 C2 sing N N 210 DT N1 C6 sing N N 211 DT C2 O2 doub N N 212 DT C2 N3 sing N N 213 DT N3 C4 sing N N 214 DT N3 H3 sing N N 215 DT C4 O4 doub N N 216 DT C4 C5 sing N N 217 DT C5 C7 sing N N 218 DT C5 C6 doub N N 219 DT C7 H71 sing N N 220 DT C7 H72 sing N N 221 DT C7 H73 sing N N 222 DT C6 H6 sing N N 223 HOH O H1 sing N N 224 HOH O H2 sing N N 225 # _ndb_struct_conf_na.entry_id 1XCU _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 B DC 5 1_555 -0.279 -0.137 -0.152 -11.368 5.416 2.367 1 A_DG2:DC11_B A 2 ? B 11 ? 19 1 1 A DT 3 1_555 B DA 4 1_555 -0.080 -0.030 0.331 -0.242 -1.299 2.006 2 A_DT3:DA10_B A 3 ? B 10 ? 20 1 1 A DA 4 1_555 B DT 3 1_555 0.185 -0.140 -0.139 -1.126 1.961 -4.520 3 A_DA4:DT9_B A 4 ? B 9 ? 20 1 1 A DC 5 1_555 B DG 2 1_555 0.283 -0.288 -0.100 16.107 -1.399 -0.196 4 A_DC5:DG8_B A 5 ? B 8 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 B DC 5 1_555 A DT 3 1_555 B DA 4 1_555 -0.134 -0.491 3.153 -4.189 2.860 24.417 -1.959 -0.892 3.056 6.670 9.769 24.931 1 AA_DG2DT3:DA10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DT 3 1_555 B DA 4 1_555 A DA 4 1_555 B DT 3 1_555 -0.051 -0.523 3.211 3.835 0.428 39.130 -0.828 0.522 3.186 0.637 -5.708 39.312 2 AA_DT3DA4:DT9DA10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DA 4 1_555 B DT 3 1_555 A DC 5 1_555 B DG 2 1_555 0.858 -0.644 2.961 -2.640 4.291 27.250 -2.256 -2.352 2.736 9.011 5.544 27.704 3 AA_DA4DC5:DG8DT9_BB A 4 ? B 9 ? A 5 ? B 8 ? # _atom_sites.entry_id 1XCU _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.034416 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018919 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024948 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BA C CO N NA O P # loop_