data_1XCZ # _entry.id 1XCZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1XCZ pdb_00001xcz 10.2210/pdb1xcz/pdb RCSB RCSB030219 ? ? WWPDB D_1000030219 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-10-19 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_remark 3 4 'Structure model' pdbx_nmr_software 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_conn 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_remark.text' 4 4 'Structure model' '_pdbx_nmr_software.name' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1XCZ _pdbx_database_status.recvd_initial_deposition_date 2004-09-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1XCY _pdbx_database_related.details 'Structure of a related duplex of identical sequence but having the alpha-anomer of the carbocyclic abasic site' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'de los Santos, C.' 1 'El-khateeb, M.' 2 'Rege, P.' 3 'Tian, K.' 4 'Johnson, F.' 5 # _citation.id primary _citation.title 'Impact of the C1 configuration of abasic sites on DNA duplex structure' _citation.journal_abbrev Biochemistry _citation.journal_volume 43 _citation.page_first 15349 _citation.page_last 15357 _citation.year 2004 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15581347 _citation.pdbx_database_id_DOI 10.1021/bi048400c # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'de Los Santos, C.' 1 ? primary 'El-Khateeb, M.' 2 ? primary 'Rege, P.' 3 ? primary 'Tian, K.' 4 ? primary 'Johnson, F.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*TP*AP*CP*(DXD)P*CP*AP*TP*GP*C)-3'" 3199.103 1 ? ? ? ? 2 polymer syn "5'-D(*GP*CP*AP*TP*GP*AP*GP*TP*AP*CP*G)-3'" 3398.235 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DC)(DG)(DT)(DA)(DC)(DXD)(DC)(DA)(DT)(DG)(DC)' CGTACNCATGC A ? 2 polydeoxyribonucleotide no no '(DG)(DC)(DA)(DT)(DG)(DA)(DG)(DT)(DA)(DC)(DG)' GCATGAGTACG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 DC n 1 6 DXD n 1 7 DC n 1 8 DA n 1 9 DT n 1 10 DG n 1 11 DC n 2 1 DG n 2 2 DC n 2 3 DA n 2 4 DT n 2 5 DG n 2 6 DA n 2 7 DG n 2 8 DT n 2 9 DA n 2 10 DC n 2 11 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Apyrimidinic abasic sites are normally present in all genomes' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 DXD 'DNA linking' . '(1S,3S,4R)-4-(PHOSPHOOXYMETHYL)-CYCLOPENTANE-1,3-DIOL' ? 'C6 H13 O6 P' 212.138 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DA 4 4 4 DA DA A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DXD 6 6 6 DXD DXD A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DA 8 8 8 DA DA A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DC 11 11 11 DC DC A . n B 2 1 DG 1 12 12 DG DG B . n B 2 2 DC 2 13 13 DC DC B . n B 2 3 DA 3 14 14 DA DA B . n B 2 4 DT 4 15 15 DT DT B . n B 2 5 DG 5 16 16 DG DG B . n B 2 6 DA 6 17 17 DA DA B . n B 2 7 DG 7 18 18 DG DG B . n B 2 8 DT 8 19 19 DT DT B . n B 2 9 DA 9 20 20 DA DA B . n B 2 10 DC 10 21 21 DC DC B . n B 2 11 DG 11 22 22 DG DG B . n # _cell.entry_id 1XCZ _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XCZ _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1XCZ _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1XCZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1XCZ _struct.title 'Structure of DNA containing the beta-anomer of a carbocyclic abasic site' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1XCZ _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Double helix, abasic site, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1XCZ 1XCZ ? ? ? 2 2 PDB 1XCZ 1XCZ ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1XCZ A 1 ? 11 ? 1XCZ 1 ? 11 ? 1 11 2 2 1XCZ B 1 ? 11 ? 1XCZ 12 ? 22 ? 12 22 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 5 "O3'" ? ? ? 1_555 A DXD 6 P ? ? A DC 5 A DXD 6 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale2 covale both ? A DXD 6 "O3'" ? ? ? 1_555 A DC 7 P ? ? A DXD 6 A DC 7 1_555 ? ? ? ? ? ? ? 1.616 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 2 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 2 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 2 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 3 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 3 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 4 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 4 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 5 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 5 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 5 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 7 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 7 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 7 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 8 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 8 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 9 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 9 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 10 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 10 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 10 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 11 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 11 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 11 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 1.612 1.529 0.083 0.010 N 2 1 C4 A DC 1 ? ? N4 A DC 1 ? ? 1.432 1.335 0.097 0.009 N 3 1 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.421 1.341 0.080 0.010 N 4 1 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.533 1.496 0.037 0.006 N 5 1 C6 A DA 4 ? ? N6 A DA 4 ? ? 1.431 1.335 0.096 0.008 N 6 1 C4 A DC 5 ? ? N4 A DC 5 ? ? 1.430 1.335 0.095 0.009 N 7 1 C4 A DC 7 ? ? N4 A DC 7 ? ? 1.431 1.335 0.096 0.009 N 8 1 C6 A DA 8 ? ? N6 A DA 8 ? ? 1.430 1.335 0.095 0.008 N 9 1 C5 A DT 9 ? ? C7 A DT 9 ? ? 1.534 1.496 0.038 0.006 N 10 1 C2 A DG 10 ? ? N2 A DG 10 ? ? 1.426 1.341 0.085 0.010 N 11 1 C4 A DC 11 ? ? N4 A DC 11 ? ? 1.432 1.335 0.097 0.009 N 12 1 C8 B DG 12 ? ? N9 B DG 12 ? ? 1.461 1.374 0.087 0.007 N 13 1 C2 B DG 12 ? ? N2 B DG 12 ? ? 1.427 1.341 0.086 0.010 N 14 1 C4 B DC 13 ? ? N4 B DC 13 ? ? 1.432 1.335 0.097 0.009 N 15 1 C6 B DA 14 ? ? N6 B DA 14 ? ? 1.431 1.335 0.096 0.008 N 16 1 C5 B DT 15 ? ? C7 B DT 15 ? ? 1.536 1.496 0.040 0.006 N 17 1 C2 B DG 16 ? ? N2 B DG 16 ? ? 1.429 1.341 0.088 0.010 N 18 1 "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? 1.602 1.518 0.084 0.012 N 19 1 C8 B DA 17 ? ? N9 B DA 17 ? ? 1.424 1.373 0.051 0.008 N 20 1 C6 B DA 17 ? ? N6 B DA 17 ? ? 1.431 1.335 0.096 0.008 N 21 1 C2 B DG 18 ? ? N2 B DG 18 ? ? 1.427 1.341 0.086 0.010 N 22 1 C6 B DA 20 ? ? N6 B DA 20 ? ? 1.429 1.335 0.094 0.008 N 23 1 C4 B DC 21 ? ? N4 B DC 21 ? ? 1.433 1.335 0.098 0.009 N 24 1 C2 B DG 22 ? ? N2 B DG 22 ? ? 1.430 1.341 0.089 0.010 N 25 2 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 1.612 1.529 0.083 0.010 N 26 2 C4 A DC 1 ? ? N4 A DC 1 ? ? 1.432 1.335 0.097 0.009 N 27 2 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.423 1.341 0.082 0.010 N 28 2 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.533 1.496 0.037 0.006 N 29 2 C6 A DA 4 ? ? N6 A DA 4 ? ? 1.431 1.335 0.096 0.008 N 30 2 C4 A DC 5 ? ? N4 A DC 5 ? ? 1.430 1.335 0.095 0.009 N 31 2 C4 A DC 7 ? ? N4 A DC 7 ? ? 1.431 1.335 0.096 0.009 N 32 2 C6 A DA 8 ? ? N6 A DA 8 ? ? 1.429 1.335 0.094 0.008 N 33 2 C5 A DT 9 ? ? C7 A DT 9 ? ? 1.535 1.496 0.039 0.006 N 34 2 C2 A DG 10 ? ? N2 A DG 10 ? ? 1.427 1.341 0.086 0.010 N 35 2 C4 A DC 11 ? ? N4 A DC 11 ? ? 1.430 1.335 0.095 0.009 N 36 2 C8 B DG 12 ? ? N9 B DG 12 ? ? 1.462 1.374 0.088 0.007 N 37 2 C2 B DG 12 ? ? N2 B DG 12 ? ? 1.427 1.341 0.086 0.010 N 38 2 C4 B DC 13 ? ? N4 B DC 13 ? ? 1.431 1.335 0.096 0.009 N 39 2 C6 B DA 14 ? ? N6 B DA 14 ? ? 1.431 1.335 0.096 0.008 N 40 2 C5 B DT 15 ? ? C7 B DT 15 ? ? 1.537 1.496 0.041 0.006 N 41 2 C2 B DG 16 ? ? N2 B DG 16 ? ? 1.427 1.341 0.086 0.010 N 42 2 "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? 1.601 1.518 0.083 0.012 N 43 2 C8 B DA 17 ? ? N9 B DA 17 ? ? 1.423 1.373 0.050 0.008 N 44 2 C6 B DA 17 ? ? N6 B DA 17 ? ? 1.431 1.335 0.096 0.008 N 45 2 C2 B DG 18 ? ? N2 B DG 18 ? ? 1.427 1.341 0.086 0.010 N 46 2 C6 B DA 20 ? ? N6 B DA 20 ? ? 1.429 1.335 0.094 0.008 N 47 2 C4 B DC 21 ? ? N4 B DC 21 ? ? 1.432 1.335 0.097 0.009 N 48 2 C2 B DG 22 ? ? N2 B DG 22 ? ? 1.429 1.341 0.088 0.010 N 49 3 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 1.613 1.529 0.084 0.010 N 50 3 C4 A DC 1 ? ? N4 A DC 1 ? ? 1.431 1.335 0.096 0.009 N 51 3 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.422 1.341 0.081 0.010 N 52 3 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.533 1.496 0.037 0.006 N 53 3 C6 A DA 4 ? ? N6 A DA 4 ? ? 1.430 1.335 0.095 0.008 N 54 3 C4 A DC 5 ? ? N4 A DC 5 ? ? 1.431 1.335 0.096 0.009 N 55 3 C4 A DC 7 ? ? N4 A DC 7 ? ? 1.432 1.335 0.097 0.009 N 56 3 C6 A DA 8 ? ? N6 A DA 8 ? ? 1.426 1.335 0.091 0.008 N 57 3 C5 A DT 9 ? ? C7 A DT 9 ? ? 1.534 1.496 0.038 0.006 N 58 3 C2 A DG 10 ? ? N2 A DG 10 ? ? 1.426 1.341 0.085 0.010 N 59 3 C4 A DC 11 ? ? N4 A DC 11 ? ? 1.431 1.335 0.096 0.009 N 60 3 C8 B DG 12 ? ? N9 B DG 12 ? ? 1.461 1.374 0.087 0.007 N 61 3 C2 B DG 12 ? ? N2 B DG 12 ? ? 1.426 1.341 0.085 0.010 N 62 3 C4 B DC 13 ? ? N4 B DC 13 ? ? 1.432 1.335 0.097 0.009 N 63 3 C6 B DA 14 ? ? N6 B DA 14 ? ? 1.430 1.335 0.095 0.008 N 64 3 C5 B DT 15 ? ? C7 B DT 15 ? ? 1.533 1.496 0.037 0.006 N 65 3 C2 B DG 16 ? ? N2 B DG 16 ? ? 1.427 1.341 0.086 0.010 N 66 3 "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? 1.590 1.529 0.061 0.010 N 67 3 "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? 1.601 1.518 0.083 0.012 N 68 3 C8 B DA 17 ? ? N9 B DA 17 ? ? 1.423 1.373 0.050 0.008 N 69 3 C6 B DA 17 ? ? N6 B DA 17 ? ? 1.430 1.335 0.095 0.008 N 70 3 C2 B DG 18 ? ? N2 B DG 18 ? ? 1.427 1.341 0.086 0.010 N 71 3 C6 B DA 20 ? ? N6 B DA 20 ? ? 1.429 1.335 0.094 0.008 N 72 3 C4 B DC 21 ? ? N4 B DC 21 ? ? 1.433 1.335 0.098 0.009 N 73 3 C2 B DG 22 ? ? N2 B DG 22 ? ? 1.429 1.341 0.088 0.010 N 74 4 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 1.611 1.529 0.082 0.010 N 75 4 C4 A DC 1 ? ? N4 A DC 1 ? ? 1.432 1.335 0.097 0.009 N 76 4 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.422 1.341 0.081 0.010 N 77 4 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.534 1.496 0.038 0.006 N 78 4 C6 A DA 4 ? ? N6 A DA 4 ? ? 1.432 1.335 0.097 0.008 N 79 4 C4 A DC 5 ? ? N4 A DC 5 ? ? 1.430 1.335 0.095 0.009 N 80 4 C4 A DC 7 ? ? N4 A DC 7 ? ? 1.431 1.335 0.096 0.009 N 81 4 C6 A DA 8 ? ? N6 A DA 8 ? ? 1.433 1.335 0.098 0.008 N 82 4 C5 A DT 9 ? ? C7 A DT 9 ? ? 1.535 1.496 0.039 0.006 N 83 4 C2 A DG 10 ? ? N2 A DG 10 ? ? 1.427 1.341 0.086 0.010 N 84 4 "C5'" A DC 11 ? ? "C4'" A DC 11 ? ? 1.555 1.512 0.043 0.007 N 85 4 C4 A DC 11 ? ? N4 A DC 11 ? ? 1.430 1.335 0.095 0.009 N 86 4 C8 B DG 12 ? ? N9 B DG 12 ? ? 1.460 1.374 0.086 0.007 N 87 4 C2 B DG 12 ? ? N2 B DG 12 ? ? 1.427 1.341 0.086 0.010 N 88 4 C4 B DC 13 ? ? N4 B DC 13 ? ? 1.431 1.335 0.096 0.009 N 89 4 C6 B DA 14 ? ? N6 B DA 14 ? ? 1.432 1.335 0.097 0.008 N 90 4 C5 B DT 15 ? ? C7 B DT 15 ? ? 1.540 1.496 0.044 0.006 N 91 4 C2 B DG 16 ? ? N2 B DG 16 ? ? 1.428 1.341 0.087 0.010 N 92 4 "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? 1.590 1.529 0.061 0.010 N 93 4 "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? 1.602 1.518 0.084 0.012 N 94 4 C8 B DA 17 ? ? N9 B DA 17 ? ? 1.424 1.373 0.051 0.008 N 95 4 C6 B DA 17 ? ? N6 B DA 17 ? ? 1.432 1.335 0.097 0.008 N 96 4 C2 B DG 18 ? ? N2 B DG 18 ? ? 1.428 1.341 0.087 0.010 N 97 4 C6 B DA 20 ? ? N6 B DA 20 ? ? 1.430 1.335 0.095 0.008 N 98 4 C4 B DC 21 ? ? N4 B DC 21 ? ? 1.433 1.335 0.098 0.009 N 99 4 C2 B DG 22 ? ? N2 B DG 22 ? ? 1.429 1.341 0.088 0.010 N 100 5 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 1.612 1.529 0.083 0.010 N 101 5 C4 A DC 1 ? ? N4 A DC 1 ? ? 1.431 1.335 0.096 0.009 N 102 5 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.423 1.341 0.082 0.010 N 103 5 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.535 1.496 0.039 0.006 N 104 5 C6 A DA 4 ? ? N6 A DA 4 ? ? 1.430 1.335 0.095 0.008 N 105 5 C4 A DC 5 ? ? N4 A DC 5 ? ? 1.431 1.335 0.096 0.009 N 106 5 C4 A DC 7 ? ? N4 A DC 7 ? ? 1.431 1.335 0.096 0.009 N 107 5 C6 A DA 8 ? ? N6 A DA 8 ? ? 1.429 1.335 0.094 0.008 N 108 5 C5 A DT 9 ? ? C7 A DT 9 ? ? 1.535 1.496 0.039 0.006 N 109 5 C2 A DG 10 ? ? N2 A DG 10 ? ? 1.427 1.341 0.086 0.010 N 110 5 C4 A DC 11 ? ? N4 A DC 11 ? ? 1.432 1.335 0.097 0.009 N 111 5 C8 B DG 12 ? ? N9 B DG 12 ? ? 1.462 1.374 0.088 0.007 N 112 5 C2 B DG 12 ? ? N2 B DG 12 ? ? 1.427 1.341 0.086 0.010 N 113 5 C4 B DC 13 ? ? N4 B DC 13 ? ? 1.431 1.335 0.096 0.009 N 114 5 C6 B DA 14 ? ? N6 B DA 14 ? ? 1.431 1.335 0.096 0.008 N 115 5 C5 B DT 15 ? ? C7 B DT 15 ? ? 1.535 1.496 0.039 0.006 N 116 5 C2 B DG 16 ? ? N2 B DG 16 ? ? 1.429 1.341 0.088 0.010 N 117 5 "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? 1.602 1.518 0.084 0.012 N 118 5 C8 B DA 17 ? ? N9 B DA 17 ? ? 1.424 1.373 0.051 0.008 N 119 5 C6 B DA 17 ? ? N6 B DA 17 ? ? 1.429 1.335 0.094 0.008 N 120 5 C2 B DG 18 ? ? N2 B DG 18 ? ? 1.428 1.341 0.087 0.010 N 121 5 C6 B DA 20 ? ? N6 B DA 20 ? ? 1.429 1.335 0.094 0.008 N 122 5 C4 B DC 21 ? ? N4 B DC 21 ? ? 1.431 1.335 0.096 0.009 N 123 5 C2 B DG 22 ? ? N2 B DG 22 ? ? 1.430 1.341 0.089 0.010 N 124 6 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 1.612 1.529 0.083 0.010 N 125 6 C4 A DC 1 ? ? N4 A DC 1 ? ? 1.432 1.335 0.097 0.009 N 126 6 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.422 1.341 0.081 0.010 N 127 6 C6 A DA 4 ? ? N6 A DA 4 ? ? 1.431 1.335 0.096 0.008 N 128 6 C4 A DC 5 ? ? N4 A DC 5 ? ? 1.431 1.335 0.096 0.009 N 129 6 C4 A DC 7 ? ? N4 A DC 7 ? ? 1.432 1.335 0.097 0.009 N 130 6 C6 A DA 8 ? ? N6 A DA 8 ? ? 1.429 1.335 0.094 0.008 N 131 6 C5 A DT 9 ? ? C7 A DT 9 ? ? 1.534 1.496 0.038 0.006 N 132 6 C2 A DG 10 ? ? N2 A DG 10 ? ? 1.427 1.341 0.086 0.010 N 133 6 "C5'" A DC 11 ? ? "C4'" A DC 11 ? ? 1.555 1.512 0.043 0.007 N 134 6 C4 A DC 11 ? ? N4 A DC 11 ? ? 1.431 1.335 0.096 0.009 N 135 6 C8 B DG 12 ? ? N9 B DG 12 ? ? 1.461 1.374 0.087 0.007 N 136 6 C2 B DG 12 ? ? N2 B DG 12 ? ? 1.428 1.341 0.087 0.010 N 137 6 C4 B DC 13 ? ? N4 B DC 13 ? ? 1.432 1.335 0.097 0.009 N 138 6 C6 B DA 14 ? ? N6 B DA 14 ? ? 1.432 1.335 0.097 0.008 N 139 6 C5 B DT 15 ? ? C7 B DT 15 ? ? 1.535 1.496 0.039 0.006 N 140 6 C2 B DG 16 ? ? N2 B DG 16 ? ? 1.429 1.341 0.088 0.010 N 141 6 "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? 1.591 1.529 0.062 0.010 N 142 6 "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? 1.599 1.518 0.081 0.012 N 143 6 C8 B DA 17 ? ? N9 B DA 17 ? ? 1.423 1.373 0.050 0.008 N 144 6 C6 B DA 17 ? ? N6 B DA 17 ? ? 1.430 1.335 0.095 0.008 N 145 6 C2 B DG 18 ? ? N2 B DG 18 ? ? 1.428 1.341 0.087 0.010 N 146 6 C6 B DA 20 ? ? N6 B DA 20 ? ? 1.428 1.335 0.093 0.008 N 147 6 C4 B DC 21 ? ? N4 B DC 21 ? ? 1.433 1.335 0.098 0.009 N 148 6 C2 B DG 22 ? ? N2 B DG 22 ? ? 1.428 1.341 0.087 0.010 N 149 7 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 1.611 1.529 0.082 0.010 N 150 7 C4 A DC 1 ? ? N4 A DC 1 ? ? 1.432 1.335 0.097 0.009 N 151 7 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.423 1.341 0.082 0.010 N 152 7 C6 A DA 4 ? ? N6 A DA 4 ? ? 1.431 1.335 0.096 0.008 N 153 7 C4 A DC 5 ? ? N4 A DC 5 ? ? 1.432 1.335 0.097 0.009 N 154 7 C4 A DC 7 ? ? N4 A DC 7 ? ? 1.431 1.335 0.096 0.009 N 155 7 C6 A DA 8 ? ? N6 A DA 8 ? ? 1.430 1.335 0.095 0.008 N 156 7 C5 A DT 9 ? ? C7 A DT 9 ? ? 1.535 1.496 0.039 0.006 N 157 7 C2 A DG 10 ? ? N2 A DG 10 ? ? 1.426 1.341 0.085 0.010 N 158 7 C4 A DC 11 ? ? N4 A DC 11 ? ? 1.432 1.335 0.097 0.009 N 159 7 C8 B DG 12 ? ? N9 B DG 12 ? ? 1.460 1.374 0.086 0.007 N 160 7 C2 B DG 12 ? ? N2 B DG 12 ? ? 1.427 1.341 0.086 0.010 N 161 7 C4 B DC 13 ? ? N4 B DC 13 ? ? 1.433 1.335 0.098 0.009 N 162 7 C6 B DA 14 ? ? N6 B DA 14 ? ? 1.431 1.335 0.096 0.008 N 163 7 C5 B DT 15 ? ? C7 B DT 15 ? ? 1.534 1.496 0.038 0.006 N 164 7 C2 B DG 16 ? ? N2 B DG 16 ? ? 1.429 1.341 0.088 0.010 N 165 7 "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? 1.590 1.529 0.061 0.010 N 166 7 "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? 1.602 1.518 0.084 0.012 N 167 7 C8 B DA 17 ? ? N9 B DA 17 ? ? 1.424 1.373 0.051 0.008 N 168 7 C6 B DA 17 ? ? N6 B DA 17 ? ? 1.429 1.335 0.094 0.008 N 169 7 C2 B DG 18 ? ? N2 B DG 18 ? ? 1.428 1.341 0.087 0.010 N 170 7 C6 B DA 20 ? ? N6 B DA 20 ? ? 1.428 1.335 0.093 0.008 N 171 7 C4 B DC 21 ? ? N4 B DC 21 ? ? 1.432 1.335 0.097 0.009 N 172 7 C2 B DG 22 ? ? N2 B DG 22 ? ? 1.429 1.341 0.088 0.010 N 173 8 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 1.612 1.529 0.083 0.010 N 174 8 C4 A DC 1 ? ? N4 A DC 1 ? ? 1.432 1.335 0.097 0.009 N 175 8 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.423 1.341 0.082 0.010 N 176 8 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.534 1.496 0.038 0.006 N 177 8 C6 A DA 4 ? ? N6 A DA 4 ? ? 1.430 1.335 0.095 0.008 N 178 8 C4 A DC 5 ? ? N4 A DC 5 ? ? 1.432 1.335 0.097 0.009 N 179 8 C4 A DC 7 ? ? N4 A DC 7 ? ? 1.431 1.335 0.096 0.009 N 180 8 C6 A DA 8 ? ? N6 A DA 8 ? ? 1.431 1.335 0.096 0.008 N 181 8 C5 A DT 9 ? ? C7 A DT 9 ? ? 1.535 1.496 0.039 0.006 N 182 8 C2 A DG 10 ? ? N2 A DG 10 ? ? 1.426 1.341 0.085 0.010 N 183 8 "C5'" A DC 11 ? ? "C4'" A DC 11 ? ? 1.554 1.512 0.042 0.007 N 184 8 C4 A DC 11 ? ? N4 A DC 11 ? ? 1.430 1.335 0.095 0.009 N 185 8 C8 B DG 12 ? ? N9 B DG 12 ? ? 1.461 1.374 0.087 0.007 N 186 8 C2 B DG 12 ? ? N2 B DG 12 ? ? 1.427 1.341 0.086 0.010 N 187 8 C4 B DC 13 ? ? N4 B DC 13 ? ? 1.431 1.335 0.096 0.009 N 188 8 C6 B DA 14 ? ? N6 B DA 14 ? ? 1.430 1.335 0.095 0.008 N 189 8 C5 B DT 15 ? ? C7 B DT 15 ? ? 1.536 1.496 0.040 0.006 N 190 8 C2 B DG 16 ? ? N2 B DG 16 ? ? 1.428 1.341 0.087 0.010 N 191 8 "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? 1.590 1.529 0.061 0.010 N 192 8 "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? 1.600 1.518 0.082 0.012 N 193 8 C8 B DA 17 ? ? N9 B DA 17 ? ? 1.424 1.373 0.051 0.008 N 194 8 C6 B DA 17 ? ? N6 B DA 17 ? ? 1.432 1.335 0.097 0.008 N 195 8 C2 B DG 18 ? ? N2 B DG 18 ? ? 1.428 1.341 0.087 0.010 N 196 8 C6 B DA 20 ? ? N6 B DA 20 ? ? 1.428 1.335 0.093 0.008 N 197 8 C4 B DC 21 ? ? N4 B DC 21 ? ? 1.432 1.335 0.097 0.009 N 198 8 C2 B DG 22 ? ? N2 B DG 22 ? ? 1.429 1.341 0.088 0.010 N 199 9 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 1.612 1.529 0.083 0.010 N 200 9 C4 A DC 1 ? ? N4 A DC 1 ? ? 1.433 1.335 0.098 0.009 N 201 9 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.423 1.341 0.082 0.010 N 202 9 C6 A DA 4 ? ? N6 A DA 4 ? ? 1.431 1.335 0.096 0.008 N 203 9 C4 A DC 5 ? ? N4 A DC 5 ? ? 1.431 1.335 0.096 0.009 N 204 9 C4 A DC 7 ? ? N4 A DC 7 ? ? 1.432 1.335 0.097 0.009 N 205 9 C6 A DA 8 ? ? N6 A DA 8 ? ? 1.432 1.335 0.097 0.008 N 206 9 C5 A DT 9 ? ? C7 A DT 9 ? ? 1.536 1.496 0.040 0.006 N 207 9 C2 A DG 10 ? ? N2 A DG 10 ? ? 1.427 1.341 0.086 0.010 N 208 9 C4 A DC 11 ? ? N4 A DC 11 ? ? 1.430 1.335 0.095 0.009 N 209 9 C8 B DG 12 ? ? N9 B DG 12 ? ? 1.461 1.374 0.087 0.007 N 210 9 C2 B DG 12 ? ? N2 B DG 12 ? ? 1.426 1.341 0.085 0.010 N 211 9 C4 B DC 13 ? ? N4 B DC 13 ? ? 1.430 1.335 0.095 0.009 N 212 9 C6 B DA 14 ? ? N6 B DA 14 ? ? 1.431 1.335 0.096 0.008 N 213 9 C5 B DT 15 ? ? C7 B DT 15 ? ? 1.537 1.496 0.041 0.006 N 214 9 C2 B DG 16 ? ? N2 B DG 16 ? ? 1.428 1.341 0.087 0.010 N 215 9 "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? 1.590 1.529 0.061 0.010 N 216 9 "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? 1.597 1.518 0.079 0.012 N 217 9 C8 B DA 17 ? ? N9 B DA 17 ? ? 1.423 1.373 0.050 0.008 N 218 9 C6 B DA 17 ? ? N6 B DA 17 ? ? 1.431 1.335 0.096 0.008 N 219 9 C2 B DG 18 ? ? N2 B DG 18 ? ? 1.427 1.341 0.086 0.010 N 220 9 C6 B DA 20 ? ? N6 B DA 20 ? ? 1.428 1.335 0.093 0.008 N 221 9 C4 B DC 21 ? ? N4 B DC 21 ? ? 1.432 1.335 0.097 0.009 N 222 9 C2 B DG 22 ? ? N2 B DG 22 ? ? 1.429 1.341 0.088 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? 97.74 102.20 -4.46 0.70 N 2 1 "C4'" A DT 3 ? ? "C3'" A DT 3 ? ? "C2'" A DT 3 ? ? 97.02 102.20 -5.18 0.70 N 3 1 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.70 108.30 3.40 0.30 N 4 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 115.67 108.30 7.37 0.30 N 5 1 "C3'" A DT 9 ? ? "C2'" A DT 9 ? ? "C1'" A DT 9 ? ? 97.60 102.40 -4.80 0.80 N 6 1 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 112.32 108.30 4.02 0.30 N 7 1 "O4'" A DG 10 ? ? "C4'" A DG 10 ? ? "C3'" A DG 10 ? ? 101.08 104.50 -3.42 0.40 N 8 1 C8 A DG 10 ? ? N9 A DG 10 ? ? "C1'" A DG 10 ? ? 134.93 127.00 7.93 1.30 N 9 1 "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? 97.22 102.20 -4.98 0.70 N 10 1 "O4'" B DG 12 ? ? "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? 101.53 104.50 -2.97 0.40 N 11 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 118.04 108.30 9.74 0.30 N 12 1 C8 B DG 12 ? ? N9 B DG 12 ? ? C4 B DG 12 ? ? 103.49 106.40 -2.91 0.40 N 13 1 N9 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 108.00 105.40 2.60 0.40 N 14 1 C8 B DG 12 ? ? N9 B DG 12 ? ? "C1'" B DG 12 ? ? 139.38 127.00 12.38 1.30 N 15 1 C4 B DG 12 ? ? N9 B DG 12 ? ? "C1'" B DG 12 ? ? 117.13 126.50 -9.37 1.30 N 16 1 C6 B DT 15 ? ? C5 B DT 15 ? ? C7 B DT 15 ? ? 119.17 122.90 -3.73 0.60 N 17 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.78 108.30 3.48 0.30 N 18 1 "O4'" B DA 17 ? ? "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? 99.14 104.50 -5.36 0.40 N 19 1 "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? "C1'" B DA 17 ? ? 93.53 102.40 -8.87 0.80 N 20 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 117.04 108.30 8.74 0.30 N 21 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 110.14 108.30 1.84 0.30 N 22 1 C6 B DT 19 ? ? C5 B DT 19 ? ? C7 B DT 19 ? ? 118.43 122.90 -4.47 0.60 N 23 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 111.69 108.30 3.39 0.30 N 24 2 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? 97.63 102.20 -4.57 0.70 N 25 2 "C4'" A DT 3 ? ? "C3'" A DT 3 ? ? "C2'" A DT 3 ? ? 96.96 102.20 -5.24 0.70 N 26 2 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.82 108.30 3.52 0.30 N 27 2 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.67 108.30 5.37 0.30 N 28 2 "C3'" A DT 9 ? ? "C2'" A DT 9 ? ? "C1'" A DT 9 ? ? 97.37 102.40 -5.03 0.80 N 29 2 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 112.47 108.30 4.17 0.30 N 30 2 "O4'" A DG 10 ? ? "C4'" A DG 10 ? ? "C3'" A DG 10 ? ? 101.09 104.50 -3.41 0.40 N 31 2 C8 A DG 10 ? ? N9 A DG 10 ? ? "C1'" A DG 10 ? ? 134.81 127.00 7.81 1.30 N 32 2 "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? 97.17 102.20 -5.03 0.70 N 33 2 "O4'" B DG 12 ? ? "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? 101.55 104.50 -2.95 0.40 N 34 2 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 117.53 108.30 9.23 0.30 N 35 2 C8 B DG 12 ? ? N9 B DG 12 ? ? C4 B DG 12 ? ? 103.42 106.40 -2.98 0.40 N 36 2 N9 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 108.07 105.40 2.67 0.40 N 37 2 C8 B DG 12 ? ? N9 B DG 12 ? ? "C1'" B DG 12 ? ? 139.33 127.00 12.33 1.30 N 38 2 C4 B DG 12 ? ? N9 B DG 12 ? ? "C1'" B DG 12 ? ? 117.26 126.50 -9.24 1.30 N 39 2 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? N1 B DC 13 ? ? 110.11 108.30 1.81 0.30 N 40 2 C6 B DT 15 ? ? C5 B DT 15 ? ? C7 B DT 15 ? ? 119.25 122.90 -3.65 0.60 N 41 2 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? "C2'" B DG 16 ? ? 100.93 105.90 -4.97 0.80 N 42 2 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 112.13 108.30 3.83 0.30 N 43 2 "O4'" B DA 17 ? ? "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? 99.14 104.50 -5.36 0.40 N 44 2 "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? "C1'" B DA 17 ? ? 93.30 102.40 -9.10 0.80 N 45 2 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 116.77 108.30 8.47 0.30 N 46 2 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 110.62 108.30 2.32 0.30 N 47 2 C6 B DT 19 ? ? C5 B DT 19 ? ? C7 B DT 19 ? ? 118.50 122.90 -4.40 0.60 N 48 2 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 111.37 108.30 3.07 0.30 N 49 3 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? 97.66 102.20 -4.54 0.70 N 50 3 "C4'" A DT 3 ? ? "C3'" A DT 3 ? ? "C2'" A DT 3 ? ? 97.00 102.20 -5.20 0.70 N 51 3 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.33 108.30 3.03 0.30 N 52 3 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 115.25 108.30 6.95 0.30 N 53 3 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 112.41 108.30 4.11 0.30 N 54 3 "O4'" A DG 10 ? ? "C4'" A DG 10 ? ? "C3'" A DG 10 ? ? 100.99 104.50 -3.51 0.40 N 55 3 C8 A DG 10 ? ? N9 A DG 10 ? ? "C1'" A DG 10 ? ? 135.29 127.00 8.29 1.30 N 56 3 "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? 97.25 102.20 -4.95 0.70 N 57 3 "O4'" B DG 12 ? ? "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? 101.49 104.50 -3.01 0.40 N 58 3 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 118.17 108.30 9.87 0.30 N 59 3 C8 B DG 12 ? ? N9 B DG 12 ? ? C4 B DG 12 ? ? 103.43 106.40 -2.97 0.40 N 60 3 N9 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 108.07 105.40 2.67 0.40 N 61 3 C8 B DG 12 ? ? N9 B DG 12 ? ? "C1'" B DG 12 ? ? 139.33 127.00 12.33 1.30 N 62 3 C4 B DG 12 ? ? N9 B DG 12 ? ? "C1'" B DG 12 ? ? 117.23 126.50 -9.27 1.30 N 63 3 C6 B DT 15 ? ? C5 B DT 15 ? ? C7 B DT 15 ? ? 119.26 122.90 -3.64 0.60 N 64 3 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.55 108.30 3.25 0.30 N 65 3 "O4'" B DA 17 ? ? "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? 99.12 104.50 -5.38 0.40 N 66 3 "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? "C1'" B DA 17 ? ? 93.21 102.40 -9.19 0.80 N 67 3 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 117.62 108.30 9.32 0.30 N 68 3 C6 B DT 19 ? ? C5 B DT 19 ? ? C7 B DT 19 ? ? 118.49 122.90 -4.41 0.60 N 69 3 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 111.20 108.30 2.90 0.30 N 70 4 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? 97.89 102.20 -4.31 0.70 N 71 4 "C4'" A DT 3 ? ? "C3'" A DT 3 ? ? "C2'" A DT 3 ? ? 96.72 102.20 -5.48 0.70 N 72 4 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 112.02 108.30 3.72 0.30 N 73 4 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.72 108.30 4.42 0.30 N 74 4 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? "C2'" A DT 9 ? ? 100.93 105.90 -4.97 0.80 N 75 4 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 112.20 108.30 3.90 0.30 N 76 4 "O4'" A DG 10 ? ? "C4'" A DG 10 ? ? "C3'" A DG 10 ? ? 100.88 104.50 -3.62 0.40 N 77 4 "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? 97.62 102.20 -4.58 0.70 N 78 4 "O4'" B DG 12 ? ? "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? 101.64 104.50 -2.86 0.40 N 79 4 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 118.09 108.30 9.79 0.30 N 80 4 C8 B DG 12 ? ? N9 B DG 12 ? ? C4 B DG 12 ? ? 103.52 106.40 -2.88 0.40 N 81 4 N9 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 108.01 105.40 2.61 0.40 N 82 4 C8 B DG 12 ? ? N9 B DG 12 ? ? "C1'" B DG 12 ? ? 139.40 127.00 12.40 1.30 N 83 4 C4 B DG 12 ? ? N9 B DG 12 ? ? "C1'" B DG 12 ? ? 117.08 126.50 -9.42 1.30 N 84 4 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? N1 B DC 13 ? ? 110.49 108.30 2.19 0.30 N 85 4 C6 B DT 15 ? ? C5 B DT 15 ? ? C7 B DT 15 ? ? 119.13 122.90 -3.77 0.60 N 86 4 "O4'" B DA 17 ? ? "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? 99.24 104.50 -5.26 0.40 N 87 4 "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? "C1'" B DA 17 ? ? 93.31 102.40 -9.09 0.80 N 88 4 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 117.40 108.30 9.10 0.30 N 89 4 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 111.05 108.30 2.75 0.30 N 90 4 C6 B DT 19 ? ? C5 B DT 19 ? ? C7 B DT 19 ? ? 118.33 122.90 -4.57 0.60 N 91 4 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 112.25 108.30 3.95 0.30 N 92 5 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? 97.54 102.20 -4.66 0.70 N 93 5 "C4'" A DT 3 ? ? "C3'" A DT 3 ? ? "C2'" A DT 3 ? ? 97.12 102.20 -5.08 0.70 N 94 5 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.95 108.30 3.65 0.30 N 95 5 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.23 108.30 3.93 0.30 N 96 5 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 112.48 108.30 4.18 0.30 N 97 5 "O4'" A DG 10 ? ? "C4'" A DG 10 ? ? "C3'" A DG 10 ? ? 100.92 104.50 -3.58 0.40 N 98 5 "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? 97.61 102.20 -4.59 0.70 N 99 5 "O4'" B DG 12 ? ? "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? 101.47 104.50 -3.03 0.40 N 100 5 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 117.91 108.30 9.61 0.30 N 101 5 C8 B DG 12 ? ? N9 B DG 12 ? ? C4 B DG 12 ? ? 103.43 106.40 -2.97 0.40 N 102 5 N9 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 108.12 105.40 2.72 0.40 N 103 5 C8 B DG 12 ? ? N9 B DG 12 ? ? "C1'" B DG 12 ? ? 139.37 127.00 12.37 1.30 N 104 5 C4 B DG 12 ? ? N9 B DG 12 ? ? "C1'" B DG 12 ? ? 117.20 126.50 -9.30 1.30 N 105 5 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? N1 B DC 13 ? ? 110.39 108.30 2.09 0.30 N 106 5 C6 B DT 15 ? ? C5 B DT 15 ? ? C7 B DT 15 ? ? 119.25 122.90 -3.65 0.60 N 107 5 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.67 108.30 3.37 0.30 N 108 5 "O4'" B DA 17 ? ? "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? 99.18 104.50 -5.32 0.40 N 109 5 "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? 108.55 103.10 5.45 0.90 N 110 5 "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? "C1'" B DA 17 ? ? 93.48 102.40 -8.92 0.80 N 111 5 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 117.24 108.30 8.94 0.30 N 112 5 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 110.46 108.30 2.16 0.30 N 113 5 C6 B DT 19 ? ? C5 B DT 19 ? ? C7 B DT 19 ? ? 118.61 122.90 -4.29 0.60 N 114 5 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 111.44 108.30 3.14 0.30 N 115 6 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? 97.31 102.20 -4.89 0.70 N 116 6 "C4'" A DT 3 ? ? "C3'" A DT 3 ? ? "C2'" A DT 3 ? ? 96.72 102.20 -5.48 0.70 N 117 6 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.64 108.30 3.34 0.30 N 118 6 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.41 108.30 4.11 0.30 N 119 6 "C3'" A DT 9 ? ? "C2'" A DT 9 ? ? "C1'" A DT 9 ? ? 97.45 102.40 -4.95 0.80 N 120 6 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 112.88 108.30 4.58 0.30 N 121 6 "O4'" A DG 10 ? ? "C4'" A DG 10 ? ? "C3'" A DG 10 ? ? 101.06 104.50 -3.44 0.40 N 122 6 "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? 97.24 102.20 -4.96 0.70 N 123 6 "O4'" B DG 12 ? ? "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? 101.49 104.50 -3.01 0.40 N 124 6 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 117.83 108.30 9.53 0.30 N 125 6 C8 B DG 12 ? ? N9 B DG 12 ? ? C4 B DG 12 ? ? 103.49 106.40 -2.91 0.40 N 126 6 N9 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 108.09 105.40 2.69 0.40 N 127 6 C8 B DG 12 ? ? N9 B DG 12 ? ? "C1'" B DG 12 ? ? 139.58 127.00 12.58 1.30 N 128 6 C4 B DG 12 ? ? N9 B DG 12 ? ? "C1'" B DG 12 ? ? 116.93 126.50 -9.57 1.30 N 129 6 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? N1 B DC 13 ? ? 110.34 108.30 2.04 0.30 N 130 6 C6 B DT 15 ? ? C5 B DT 15 ? ? C7 B DT 15 ? ? 119.27 122.90 -3.63 0.60 N 131 6 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.60 108.30 3.30 0.30 N 132 6 "O4'" B DA 17 ? ? "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? 99.28 104.50 -5.22 0.40 N 133 6 "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? "C1'" B DA 17 ? ? 93.40 102.40 -9.00 0.80 N 134 6 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 116.98 108.30 8.68 0.30 N 135 6 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 110.52 108.30 2.22 0.30 N 136 6 C6 B DT 19 ? ? C5 B DT 19 ? ? C7 B DT 19 ? ? 118.39 122.90 -4.51 0.60 N 137 6 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 111.49 108.30 3.19 0.30 N 138 7 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? 97.51 102.20 -4.69 0.70 N 139 7 "C4'" A DT 3 ? ? "C3'" A DT 3 ? ? "C2'" A DT 3 ? ? 96.93 102.20 -5.27 0.70 N 140 7 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.60 108.30 3.30 0.30 N 141 7 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.62 108.30 4.32 0.30 N 142 7 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 111.25 108.30 2.95 0.30 N 143 7 "C3'" A DT 9 ? ? "C2'" A DT 9 ? ? "C1'" A DT 9 ? ? 97.58 102.40 -4.82 0.80 N 144 7 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 112.35 108.30 4.05 0.30 N 145 7 "O4'" A DG 10 ? ? "C4'" A DG 10 ? ? "C3'" A DG 10 ? ? 101.09 104.50 -3.41 0.40 N 146 7 C8 A DG 10 ? ? N9 A DG 10 ? ? "C1'" A DG 10 ? ? 134.92 127.00 7.92 1.30 N 147 7 "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? 97.22 102.20 -4.98 0.70 N 148 7 "O4'" B DG 12 ? ? "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? 101.67 104.50 -2.83 0.40 N 149 7 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 117.81 108.30 9.51 0.30 N 150 7 C8 B DG 12 ? ? N9 B DG 12 ? ? C4 B DG 12 ? ? 103.45 106.40 -2.95 0.40 N 151 7 N9 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 107.99 105.40 2.59 0.40 N 152 7 C8 B DG 12 ? ? N9 B DG 12 ? ? "C1'" B DG 12 ? ? 139.36 127.00 12.36 1.30 N 153 7 C4 B DG 12 ? ? N9 B DG 12 ? ? "C1'" B DG 12 ? ? 117.20 126.50 -9.30 1.30 N 154 7 C6 B DT 15 ? ? C5 B DT 15 ? ? C7 B DT 15 ? ? 119.21 122.90 -3.69 0.60 N 155 7 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? "C2'" B DG 16 ? ? 101.08 105.90 -4.82 0.80 N 156 7 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 112.27 108.30 3.97 0.30 N 157 7 "O4'" B DA 17 ? ? "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? 99.24 104.50 -5.26 0.40 N 158 7 "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? 108.58 103.10 5.48 0.90 N 159 7 "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? "C1'" B DA 17 ? ? 93.70 102.40 -8.70 0.80 N 160 7 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 117.03 108.30 8.73 0.30 N 161 7 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 110.43 108.30 2.13 0.30 N 162 7 C6 B DT 19 ? ? C5 B DT 19 ? ? C7 B DT 19 ? ? 118.52 122.90 -4.38 0.60 N 163 7 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 111.29 108.30 2.99 0.30 N 164 8 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? 97.72 102.20 -4.48 0.70 N 165 8 "C4'" A DT 3 ? ? "C3'" A DT 3 ? ? "C2'" A DT 3 ? ? 97.03 102.20 -5.17 0.70 N 166 8 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.76 108.30 3.46 0.30 N 167 8 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.92 108.30 4.62 0.30 N 168 8 "C3'" A DT 9 ? ? "C2'" A DT 9 ? ? "C1'" A DT 9 ? ? 97.35 102.40 -5.05 0.80 N 169 8 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? "C2'" A DT 9 ? ? 101.07 105.90 -4.83 0.80 N 170 8 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 112.77 108.30 4.47 0.30 N 171 8 "O4'" A DG 10 ? ? "C4'" A DG 10 ? ? "C3'" A DG 10 ? ? 100.89 104.50 -3.61 0.40 N 172 8 C8 A DG 10 ? ? N9 A DG 10 ? ? "C1'" A DG 10 ? ? 134.89 127.00 7.89 1.30 N 173 8 "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? 97.86 102.20 -4.34 0.70 N 174 8 "O4'" B DG 12 ? ? "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? 101.56 104.50 -2.94 0.40 N 175 8 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 117.80 108.30 9.50 0.30 N 176 8 C8 B DG 12 ? ? N9 B DG 12 ? ? C4 B DG 12 ? ? 103.50 106.40 -2.90 0.40 N 177 8 N9 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 108.06 105.40 2.66 0.40 N 178 8 C8 B DG 12 ? ? N9 B DG 12 ? ? "C1'" B DG 12 ? ? 139.33 127.00 12.33 1.30 N 179 8 C4 B DG 12 ? ? N9 B DG 12 ? ? "C1'" B DG 12 ? ? 117.17 126.50 -9.33 1.30 N 180 8 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? N1 B DC 13 ? ? 110.51 108.30 2.21 0.30 N 181 8 C6 B DT 15 ? ? C5 B DT 15 ? ? C7 B DT 15 ? ? 119.26 122.90 -3.64 0.60 N 182 8 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? "C2'" B DG 16 ? ? 100.90 105.90 -5.00 0.80 N 183 8 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 112.12 108.30 3.82 0.30 N 184 8 "O4'" B DA 17 ? ? "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? 99.14 104.50 -5.36 0.40 N 185 8 "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? 108.62 103.10 5.52 0.90 N 186 8 "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? "C1'" B DA 17 ? ? 93.32 102.40 -9.08 0.80 N 187 8 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 117.06 108.30 8.76 0.30 N 188 8 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 110.79 108.30 2.49 0.30 N 189 8 C6 B DT 19 ? ? C5 B DT 19 ? ? C7 B DT 19 ? ? 118.74 122.90 -4.16 0.60 N 190 8 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 111.51 108.30 3.21 0.30 N 191 9 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? 97.64 102.20 -4.56 0.70 N 192 9 "C4'" A DT 3 ? ? "C3'" A DT 3 ? ? "C2'" A DT 3 ? ? 96.77 102.20 -5.43 0.70 N 193 9 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.80 108.30 3.50 0.30 N 194 9 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.52 108.30 2.22 0.30 N 195 9 "C3'" A DT 9 ? ? "C2'" A DT 9 ? ? "C1'" A DT 9 ? ? 97.40 102.40 -5.00 0.80 N 196 9 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? "C2'" A DT 9 ? ? 100.84 105.90 -5.06 0.80 N 197 9 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 113.27 108.30 4.97 0.30 N 198 9 "O4'" A DG 10 ? ? "C4'" A DG 10 ? ? "C3'" A DG 10 ? ? 101.05 104.50 -3.45 0.40 N 199 9 C8 A DG 10 ? ? N9 A DG 10 ? ? "C1'" A DG 10 ? ? 134.91 127.00 7.91 1.30 N 200 9 "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? 97.38 102.20 -4.82 0.70 N 201 9 "O4'" B DG 12 ? ? "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? 101.53 104.50 -2.97 0.40 N 202 9 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 117.63 108.30 9.33 0.30 N 203 9 C8 B DG 12 ? ? N9 B DG 12 ? ? C4 B DG 12 ? ? 103.47 106.40 -2.93 0.40 N 204 9 N9 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 108.11 105.40 2.71 0.40 N 205 9 C8 B DG 12 ? ? N9 B DG 12 ? ? "C1'" B DG 12 ? ? 139.34 127.00 12.34 1.30 N 206 9 C4 B DG 12 ? ? N9 B DG 12 ? ? "C1'" B DG 12 ? ? 117.19 126.50 -9.31 1.30 N 207 9 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? N1 B DC 13 ? ? 110.99 108.30 2.69 0.30 N 208 9 C6 B DT 15 ? ? C5 B DT 15 ? ? C7 B DT 15 ? ? 119.28 122.90 -3.62 0.60 N 209 9 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.13 108.30 2.83 0.30 N 210 9 "O4'" B DA 17 ? ? "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? 99.16 104.50 -5.34 0.40 N 211 9 "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? 108.54 103.10 5.44 0.90 N 212 9 "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? "C1'" B DA 17 ? ? 93.45 102.40 -8.95 0.80 N 213 9 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 117.93 108.30 9.63 0.30 N 214 9 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 111.00 108.30 2.70 0.30 N 215 9 C6 B DT 19 ? ? C5 B DT 19 ? ? C7 B DT 19 ? ? 118.45 122.90 -4.45 0.60 N 216 9 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 111.74 108.30 3.44 0.30 N # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 "C1'" ? A DXD 6 ? 'WRONG HAND' . 2 2 "C1'" ? A DXD 6 ? 'WRONG HAND' . 3 3 "C1'" ? A DXD 6 ? 'WRONG HAND' . 4 4 "C1'" ? A DXD 6 ? 'WRONG HAND' . 5 5 "C1'" ? A DXD 6 ? 'WRONG HAND' . 6 6 "C1'" ? A DXD 6 ? 'WRONG HAND' . 7 7 "C1'" ? A DXD 6 ? 'WRONG HAND' . 8 8 "C1'" ? A DXD 6 ? 'WRONG HAND' . 9 9 "C1'" ? A DXD 6 ? 'WRONG HAND' . # _pdbx_database_remark.id 600 _pdbx_database_remark.text ;HETEROGEN Sugar protons identified with asterisks in the coordinate file are named with primes in the primary citation. ; # _pdbx_nmr_ensemble.entry_id 1XCZ _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 9 _pdbx_nmr_ensemble.conformer_selection_criteria 'converging structures (<1.5A) and the least restraints violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1XCZ _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1.2 mM sample, 50 mM phosphate buffer, 50 mM NaCl, 1 mM EDTA, 99.96% D2O' '100% D2O' 2 '1.2 mM sample, 50 mM phosphate buffer, 50 mM NaCl, 1 mM EDTA, 90% H2O-10% D2O' '90% H2O/10% D2O' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 290 ambient 6.9 ? ? K 2 277 ambient 6.9 ? ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 'COSY, DQF-COSY, COSY45, TOCSY, NOESY, [1H-31P]HETCOR' 2 2 2 '2D NOESY' # _pdbx_nmr_details.entry_id 1XCZ _pdbx_nmr_details.text 'Several NOESY spectra recorded using different mixing times.' # _pdbx_nmr_refine.entry_id 1XCZ _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ;The structures are based on a total of 400 distances between non-exchangeable protons, 26 distance restraints enforcing WC base pairs and 96 backbone dihedral restraints. ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal X-PLOR 3.85 refinement Brunger 1 Felix 98 processing Accelrys 2 Felix 98 'data analysis' Accelrys 3 Curves 5.1 'data analysis' 'Lavery AND Sklenar' 4 VNMR 6.1 collection Varian 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 DXD P P N N 144 DXD OP1 O N N 145 DXD OP2 O N N 146 DXD "O5'" O N N 147 DXD "C5'" C N N 148 DXD "C4'" C N R 149 DXD "C1'" C N S 150 DXD "C6'" C N N 151 DXD "O6'" O N N 152 DXD "C2'" C N N 153 DXD "C3'" C N S 154 DXD "O3'" O N N 155 DXD OP3 O N N 156 DXD HOP2 H N N 157 DXD "H5'1" H N N 158 DXD "H5'2" H N N 159 DXD "H4'" H N N 160 DXD "H1'" H N N 161 DXD "H6'1" H N N 162 DXD "H6'2" H N N 163 DXD "H7'" H N N 164 DXD "H2'1" H N N 165 DXD "H2'2" H N N 166 DXD "H3'" H N N 167 DXD "HO3'" H N N 168 DXD HOP3 H N N 169 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 DXD P OP1 doub N N 150 DXD P OP2 sing N N 151 DXD P "O5'" sing N N 152 DXD P OP3 sing N N 153 DXD OP2 HOP2 sing N N 154 DXD "O5'" "C5'" sing N N 155 DXD "C5'" "C4'" sing N N 156 DXD "C5'" "H5'1" sing N N 157 DXD "C5'" "H5'2" sing N N 158 DXD "C4'" "C6'" sing N N 159 DXD "C4'" "C3'" sing N N 160 DXD "C4'" "H4'" sing N N 161 DXD "C1'" "C6'" sing N N 162 DXD "C1'" "O6'" sing N N 163 DXD "C1'" "C2'" sing N N 164 DXD "C1'" "H1'" sing N N 165 DXD "C6'" "H6'1" sing N N 166 DXD "C6'" "H6'2" sing N N 167 DXD "O6'" "H7'" sing N N 168 DXD "C2'" "C3'" sing N N 169 DXD "C2'" "H2'1" sing N N 170 DXD "C2'" "H2'2" sing N N 171 DXD "C3'" "O3'" sing N N 172 DXD "C3'" "H3'" sing N N 173 DXD "O3'" "HO3'" sing N N 174 DXD OP3 HOP3 sing N N 175 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1XCZ 'double helix' 1XCZ 'b-form double helix' 1XCZ 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 11 1_555 0.625 -0.205 -0.003 0.007 0.257 -1.571 1 A_DC1:DG22_B A 1 ? B 22 ? 19 1 1 A DG 2 1_555 B DC 10 1_555 -0.636 -0.160 -0.177 -11.293 1.015 1.820 2 A_DG2:DC21_B A 2 ? B 21 ? 19 1 1 A DT 3 1_555 B DA 9 1_555 -0.397 -0.077 0.433 -14.825 -1.948 -6.467 3 A_DT3:DA20_B A 3 ? B 20 ? 20 1 1 A DA 4 1_555 B DT 8 1_555 0.267 -0.082 0.148 -3.481 -5.299 -1.985 4 A_DA4:DT19_B A 4 ? B 19 ? 20 1 1 A DC 5 1_555 B DG 7 1_555 0.795 -0.238 -0.135 11.774 -4.284 0.014 5 A_DC5:DG18_B A 5 ? B 18 ? 19 1 1 A DC 7 1_555 B DG 5 1_555 0.435 -0.263 1.064 -23.678 -4.079 -5.442 6 A_DC7:DG16_B A 7 ? B 16 ? 19 1 1 A DA 8 1_555 B DT 4 1_555 0.301 -0.074 0.121 0.595 -8.659 -5.947 7 A_DA8:DT15_B A 8 ? B 15 ? 20 1 1 A DT 9 1_555 B DA 3 1_555 -0.070 -0.095 -0.116 1.503 -4.281 -5.292 8 A_DT9:DA14_B A 9 ? B 14 ? 20 1 1 A DG 10 1_555 B DC 2 1_555 -0.538 -0.220 0.347 -1.259 -5.674 0.194 9 A_DG10:DC13_B A 10 ? B 13 ? 19 1 1 A DC 11 1_555 B DG 1 1_555 0.687 -0.191 -0.023 0.580 -0.104 -3.124 10 A_DC11:DG12_B A 11 ? B 12 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 11 1_555 A DG 2 1_555 B DC 10 1_555 0.331 -1.212 3.497 2.198 -6.262 30.794 -0.935 -0.155 3.680 -11.622 -4.080 31.484 1 AA_DC1DG2:DC21DG22_BB A 1 ? B 22 ? A 2 ? B 21 ? 1 A DG 2 1_555 B DC 10 1_555 A DT 3 1_555 B DA 9 1_555 -0.421 -1.255 3.393 -1.717 -6.507 37.080 -1.038 0.413 3.570 -10.130 2.673 37.665 2 AA_DG2DT3:DA20DC21_BB A 2 ? B 21 ? A 3 ? B 20 ? 1 A DT 3 1_555 B DA 9 1_555 A DA 4 1_555 B DT 8 1_555 0.195 -1.486 2.614 3.736 6.781 35.809 -3.075 0.081 2.311 10.871 -5.989 36.610 3 AA_DT3DA4:DT19DA20_BB A 3 ? B 20 ? A 4 ? B 19 ? 1 A DA 4 1_555 B DT 8 1_555 A DC 5 1_555 B DG 7 1_555 0.516 -0.566 2.734 2.223 2.925 31.028 -1.513 -0.606 2.700 5.444 -4.138 31.240 4 AA_DA4DC5:DG18DT19_BB A 4 ? B 19 ? A 5 ? B 18 ? 1 A DC 7 1_555 B DG 5 1_555 A DA 8 1_555 B DT 4 1_555 -0.921 -0.859 2.330 4.801 6.657 29.129 -2.540 2.410 1.918 12.915 -9.314 30.239 5 AA_DC7DA8:DT15DG16_BB A 7 ? B 16 ? A 8 ? B 15 ? 1 A DA 8 1_555 B DT 4 1_555 A DT 9 1_555 B DA 3 1_555 0.476 -1.116 3.226 -0.376 -4.048 31.149 -1.298 -0.950 3.335 -7.498 0.697 31.407 6 AA_DA8DT9:DA14DT15_BB A 8 ? B 15 ? A 9 ? B 14 ? 1 A DT 9 1_555 B DA 3 1_555 A DG 10 1_555 B DC 2 1_555 0.109 -1.242 2.949 -5.842 7.818 33.197 -3.127 -0.957 2.545 13.329 9.961 34.563 7 AA_DT9DG10:DC13DA14_BB A 9 ? B 14 ? A 10 ? B 13 ? 1 A DG 10 1_555 B DC 2 1_555 A DC 11 1_555 B DG 1 1_555 -0.242 0.032 3.376 1.318 -11.206 55.155 0.691 0.334 3.307 -11.963 -1.407 56.208 8 AA_DG10DC11:DG12DC13_BB A 10 ? B 13 ? A 11 ? B 12 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Varian INOVA 500 2 ? Varian INOVA 600 # _atom_sites.entry_id 1XCZ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_