HEADER TRANSFERASE 08-SEP-04 1XDU TITLE CRYSTAL STRUCTURE OF ACLACINOMYCIN-10-HYDROXYLASE (RDMB) IN COMPLEX TITLE 2 WITH SINEFUNGIN (SFG) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN RDMB; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES PURPURASCENS; SOURCE 3 ORGANISM_TAXID: 1924; SOURCE 4 GENE: RDMB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PRDM16 FROM PGEX4T-3 KEYWDS ANTHRACYCLINE; HYDROXYLASE; S-ADENOSYL-L-METHIONINE ANALOGUE; KEYWDS 2 SINEFUNGIN; STREPTOMYCES; POLYKETIDE ANTIBIOTICS; DIVERGENT KEYWDS 3 EVOLUTION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.JANSSON,H.KOSKINIEMI,A.EROLA,J.WANG,P.MANTSALA,G.SCHNEIDER,J.NIEMI REVDAT 5 03-APR-24 1XDU 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 1XDU 1 VERSN REVDAT 3 24-FEB-09 1XDU 1 VERSN REVDAT 2 22-FEB-05 1XDU 1 JRNL REVDAT 1 23-NOV-04 1XDU 0 JRNL AUTH A.JANSSON,H.KOSKINIEMI,A.EROLA,J.WANG,G.SCHNEIDER,J.NIEMI JRNL TITL ACLACINOMYCIN 10-HYDROXYLASE IS A NOVEL SUBSTRATE-ASSISTED JRNL TITL 2 HYDROXYLASE REQUIRING S-ADENOSYL-L-METHIONINE AS COFACTOR JRNL REF J.BIOL.CHEM. V. 280 3636 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15548527 JRNL DOI 10.1074/JBC.M412095200 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 8521 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 419 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 614 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.4260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2570 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.42000 REMARK 3 B22 (A**2) : 2.08000 REMARK 3 B33 (A**2) : -0.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.451 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.343 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.587 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.912 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.854 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2631 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2497 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3580 ; 1.201 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5719 ; 0.818 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 337 ; 5.616 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 422 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2975 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 562 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 619 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2829 ; 0.226 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1599 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 42 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.215 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 128 ; 0.263 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.190 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1689 ; 0.511 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2676 ; 0.973 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 942 ; 0.989 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 904 ; 1.852 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1XDU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-SEP-04. REMARK 100 THE DEPOSITION ID IS D_1000030248. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0500 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8940 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 58.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 9.820 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10400 REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.25200 REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: RDMB+SAM COMPLEX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM ACETATE, PEG 4000, SODIUM REMARK 280 ACETATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.69750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.69750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.37900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.40650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.37900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.40650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.69750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.37900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.40650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.69750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.37900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.40650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 62.75800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 58.69750 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 PRO A 6 REMARK 465 GLY A 7 REMARK 465 GLU A 8 REMARK 465 PRO A 9 REMARK 465 GLN A 85 REMARK 465 ALA A 289 REMARK 465 ASP A 290 REMARK 465 VAL A 291 REMARK 465 GLU A 292 REMARK 465 GLY A 293 REMARK 465 ASP A 294 REMARK 465 GLY A 295 REMARK 465 GLU A 358 REMARK 465 GLU A 359 REMARK 465 ALA A 360 REMARK 465 ALA A 361 REMARK 465 PRO A 362 REMARK 465 ALA A 363 REMARK 465 ALA A 364 REMARK 465 GLN A 365 REMARK 465 ALA A 366 REMARK 465 SER A 367 REMARK 465 GLU A 368 REMARK 465 ALA A 369 REMARK 465 LEU A 370 REMARK 465 PRO A 371 REMARK 465 ALA A 372 REMARK 465 GLN A 373 REMARK 465 GLU A 374 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 319 CG2 THR A 338 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 319 OE1 GLU A 336 4566 0.95 REMARK 500 NH1 ARG A 319 CD GLU A 336 4566 1.63 REMARK 500 CZ ARG A 319 OE1 GLU A 336 4566 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 227 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 23 -83.50 -130.51 REMARK 500 ASP A 50 -30.23 -154.20 REMARK 500 GLU A 83 -56.20 -15.70 REMARK 500 PHE A 145 -64.88 -29.90 REMARK 500 ASP A 287 -152.94 -173.02 REMARK 500 SER A 339 149.86 -170.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 421 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SFG A 5635 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QZZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ACLACINOMYCIN-10-HYDROXYLASE (RDMB) IN COMPLEX REMARK 900 WITH S-ADENOSYL-L-METHIONINE (SAM) REMARK 900 RELATED ID: 1R00 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ACLACINOMYCIN-10-HYDROXYLASE (RDMB) IN COMPLEX REMARK 900 WITH S-ADENOSYL-L-HOMOCYSTEIN (SAH) REMARK 900 RELATED ID: 1TW3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CARMINOMYCIN-4-O-METHYLTRANSFERASE (DNRK) IN REMARK 900 COMPLEX WITH S-ADENOSYL-L-HOMOCYSTEIN (SAH) AND EPSILON-RHODOMYCIN REMARK 900 T (ET) REMARK 900 RELATED ID: 1XDS RELATED DB: PDB DBREF 1XDU A 1 374 UNP Q54527 Q54527_9ACTO 1 374 SEQADV 1XDU MSE A 1 UNP Q54527 MET 1 MODIFIED RESIDUE SEQADV 1XDU MSE A 31 UNP Q54527 MET 31 MODIFIED RESIDUE SEQADV 1XDU MSE A 96 UNP Q54527 MET 96 MODIFIED RESIDUE SEQADV 1XDU MSE A 163 UNP Q54527 MET 163 MODIFIED RESIDUE SEQADV 1XDU MSE A 196 UNP Q54527 MET 196 MODIFIED RESIDUE SEQADV 1XDU MSE A 308 UNP Q54527 MET 308 MODIFIED RESIDUE SEQADV 1XDU MSE A 312 UNP Q54527 MET 312 MODIFIED RESIDUE SEQRES 1 A 374 MSE SER SER SER SER PRO GLY GLU PRO LEU GLU PRO THR SEQRES 2 A 374 ASP GLN ASP LEU ASP VAL LEU LEU LYS ASN LEU GLY ASN SEQRES 3 A 374 LEU VAL THR PRO MSE ALA LEU ARG VAL ALA ALA THR LEU SEQRES 4 A 374 ARG LEU VAL ASP HIS LEU LEU ALA GLY ALA ASP THR LEU SEQRES 5 A 374 ALA GLY LEU ALA ASP ARG THR ASP THR HIS PRO GLN ALA SEQRES 6 A 374 LEU SER ARG LEU VAL ARG HIS LEU THR VAL VAL GLY VAL SEQRES 7 A 374 LEU GLU GLY GLY GLU LYS GLN GLY ARG PRO LEU ARG PRO SEQRES 8 A 374 THR ARG LEU GLY MSE LEU LEU ALA ASP GLY HIS PRO ALA SEQRES 9 A 374 GLN GLN ARG ALA TRP LEU ASP LEU ASN GLY ALA VAL SER SEQRES 10 A 374 HIS ALA ASP LEU ALA PHE THR GLY LEU LEU ASP VAL VAL SEQRES 11 A 374 ARG THR GLY ARG PRO ALA TYR ALA GLY ARG TYR GLY ARG SEQRES 12 A 374 PRO PHE TRP GLU ASP LEU SER ALA ASP VAL ALA LEU ALA SEQRES 13 A 374 ASP SER PHE ASP ALA LEU MSE SER CYS ASP GLU ASP LEU SEQRES 14 A 374 ALA TYR GLU ALA PRO ALA ASP ALA TYR ASP TRP SER ALA SEQRES 15 A 374 VAL ARG HIS VAL LEU ASP VAL GLY GLY GLY ASN GLY GLY SEQRES 16 A 374 MSE LEU ALA ALA ILE ALA LEU ARG ALA PRO HIS LEU ARG SEQRES 17 A 374 GLY THR LEU VAL GLU LEU ALA GLY PRO ALA GLU ARG ALA SEQRES 18 A 374 ARG ARG ARG PHE ALA ASP ALA GLY LEU ALA ASP ARG VAL SEQRES 19 A 374 THR VAL ALA GLU GLY ASP PHE PHE LYS PRO LEU PRO VAL SEQRES 20 A 374 THR ALA ASP VAL VAL LEU LEU SER PHE VAL LEU LEU ASN SEQRES 21 A 374 TRP SER ASP GLU ASP ALA LEU THR ILE LEU ARG GLY CYS SEQRES 22 A 374 VAL ARG ALA LEU GLU PRO GLY GLY ARG LEU LEU VAL LEU SEQRES 23 A 374 ASP ARG ALA ASP VAL GLU GLY ASP GLY ALA ASP ARG PHE SEQRES 24 A 374 PHE SER THR LEU LEU ASP LEU ARG MSE LEU THR PHE MSE SEQRES 25 A 374 GLY GLY ARG VAL ARG THR ARG ASP GLU VAL VAL ASP LEU SEQRES 26 A 374 ALA GLY SER ALA GLY LEU ALA LEU ALA SER GLU ARG THR SEQRES 27 A 374 SER GLY SER THR THR LEU PRO PHE ASP PHE SER ILE LEU SEQRES 28 A 374 GLU PHE THR ALA VAL SER GLU GLU ALA ALA PRO ALA ALA SEQRES 29 A 374 GLN ALA SER GLU ALA LEU PRO ALA GLN GLU MODRES 1XDU MSE A 31 MET SELENOMETHIONINE MODRES 1XDU MSE A 96 MET SELENOMETHIONINE MODRES 1XDU MSE A 163 MET SELENOMETHIONINE MODRES 1XDU MSE A 196 MET SELENOMETHIONINE MODRES 1XDU MSE A 308 MET SELENOMETHIONINE MODRES 1XDU MSE A 312 MET SELENOMETHIONINE HET MSE A 31 8 HET MSE A 96 8 HET MSE A 163 8 HET MSE A 196 8 HET MSE A 308 8 HET MSE A 312 8 HET ACT A 421 4 HET SFG A5635 27 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION HETNAM SFG SINEFUNGIN HETSYN SFG ADENOSYL-ORNITHINE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 ACT C2 H3 O2 1- FORMUL 3 SFG C15 H23 N7 O5 FORMUL 4 HOH *26(H2 O) HELIX 1 1 THR A 13 ASN A 23 1 11 HELIX 2 2 LEU A 27 LEU A 39 1 13 HELIX 3 3 ARG A 40 ALA A 47 1 8 HELIX 4 4 THR A 51 ARG A 58 1 8 HELIX 5 5 HIS A 62 VAL A 76 1 15 HELIX 6 6 ARG A 93 ALA A 99 5 7 HELIX 7 7 GLN A 105 ASP A 111 1 7 HELIX 8 8 GLY A 114 LEU A 121 1 8 HELIX 9 9 ALA A 122 THR A 124 5 3 HELIX 10 10 GLY A 125 GLY A 133 1 9 HELIX 11 11 ALA A 136 GLY A 142 1 7 HELIX 12 12 PRO A 144 ASP A 152 1 9 HELIX 13 13 ASP A 152 LEU A 162 1 11 HELIX 14 14 MSE A 163 GLU A 167 5 5 HELIX 15 15 TYR A 171 TYR A 178 1 8 HELIX 16 16 GLY A 194 ALA A 204 1 11 HELIX 17 17 LEU A 214 ALA A 228 1 15 HELIX 18 18 VAL A 257 TRP A 261 5 5 HELIX 19 19 SER A 262 ALA A 276 1 15 HELIX 20 20 ALA A 296 GLY A 313 1 18 HELIX 21 21 THR A 318 SER A 328 1 11 SHEET 1 A 2 LEU A 79 GLU A 80 0 SHEET 2 A 2 ARG A 90 PRO A 91 -1 O ARG A 90 N GLU A 80 SHEET 1 B 7 VAL A 234 GLU A 238 0 SHEET 2 B 7 ARG A 208 GLU A 213 1 N LEU A 211 O ALA A 237 SHEET 3 B 7 HIS A 185 VAL A 189 1 N ASP A 188 O THR A 210 SHEET 4 B 7 ALA A 249 SER A 255 1 O LEU A 253 N LEU A 187 SHEET 5 B 7 LEU A 277 ASP A 287 1 O GLU A 278 N ALA A 249 SHEET 6 B 7 PHE A 348 ALA A 355 -1 O PHE A 353 N LEU A 283 SHEET 7 B 7 LEU A 331 SER A 339 -1 N ALA A 334 O GLU A 352 LINK C PRO A 30 N MSE A 31 1555 1555 1.33 LINK C MSE A 31 N ALA A 32 1555 1555 1.33 LINK C GLY A 95 N MSE A 96 1555 1555 1.33 LINK C MSE A 96 N LEU A 97 1555 1555 1.33 LINK C LEU A 162 N MSE A 163 1555 1555 1.33 LINK C MSE A 163 N SER A 164 1555 1555 1.33 LINK C GLY A 195 N MSE A 196 1555 1555 1.33 LINK C MSE A 196 N LEU A 197 1555 1555 1.33 LINK C ARG A 307 N MSE A 308 1555 1555 1.33 LINK C MSE A 308 N LEU A 309 1555 1555 1.33 LINK C PHE A 311 N MSE A 312 1555 1555 1.33 LINK C MSE A 312 N GLY A 313 1555 1555 1.33 SITE 1 AC1 2 VAL A 236 HOH A5661 SITE 1 AC2 16 TRP A 146 TYR A 171 GLY A 190 GLY A 191 SITE 2 AC2 16 GLY A 192 GLU A 213 LEU A 214 PRO A 217 SITE 3 AC2 16 GLY A 239 ASP A 240 PHE A 241 PHE A 242 SITE 4 AC2 16 SER A 255 PHE A 256 ASN A 260 TRP A 261 CRYST1 62.758 86.813 117.395 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015934 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011519 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008518 0.00000