HEADER OXIDOREDUCTASE 17-SEP-04 1XHC TITLE NADH OXIDASE /NITRITE REDUCTASE FROM PYROCOCCUS FURIOSUS PFU-1140779- TITLE 2 001 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADH OXIDASE /NITRITE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 186497; SOURCE 4 STRAIN: DSM 3638; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NADH OXIDASE, NITRITE REDUCTASE, PYROCOCCUS FURIOSUS, SOUTHEAST KEYWDS 2 COLLABORATORY FOR STRUCTURAL GENOMICS, SECSG, HYPERTHERMOPHILE, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, PSI, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.HORANYI,W.TEMPEL,M.V.WEINBERG,Z.-J.LIU,A.SHAH,L.CHEN,D.LEE, AUTHOR 2 F.J.SUGAR,P.S.BRERETON,M.IZUMI,F.L.POOLE II,C.SHAH,F.E.JENNEY JR., AUTHOR 3 W.B.ARENDALL III,J.P.ROSE,M.W.W.ADAMS,J.S.RICHARDSON,D.C.RICHARDSON, AUTHOR 4 B.-C.WANG,SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS (SECSG) REVDAT 6 23-AUG-23 1XHC 1 REMARK SEQADV REVDAT 5 11-OCT-17 1XHC 1 REMARK REVDAT 4 13-JUL-11 1XHC 1 VERSN REVDAT 3 24-FEB-09 1XHC 1 VERSN REVDAT 2 01-FEB-05 1XHC 1 REMARK REVDAT 1 23-NOV-04 1XHC 0 JRNL AUTH P.HORANYI,W.TEMPEL,M.V.WEINBERG,Z.-J.LIU,A.SHAH,L.CHEN, JRNL AUTH 2 D.LEE,F.J.SUGAR,P.S.BRERETON,M.IZUMI,F.L.POOLE II,C.SHAH, JRNL AUTH 3 F.E.JENNEY JR.,W.B.ARENDALL III,J.P.ROSE,M.W.W.ADAMS, JRNL AUTH 4 J.S.RICHARDSON,D.C.RICHARDSON,B.-C.WANG, JRNL AUTH 5 SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS JRNL TITL NADH OXIDASE /NITRITE REDUCTASE FROM PYROCOCCUS FURIOSUS JRNL TITL 2 PFU-1140779-001 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0003 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 18210 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.025 REMARK 3 FREE R VALUE TEST SET COUNT : 915 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1148 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2637 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.68900 REMARK 3 B22 (A**2) : 0.96500 REMARK 3 B33 (A**2) : -1.65400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.313 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.229 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.168 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.704 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2743 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2555 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3714 ; 1.407 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5903 ; 0.793 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 344 ; 6.553 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;31.402 ;24.196 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 463 ;14.946 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;20.027 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 420 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3031 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 544 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 422 ; 0.189 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2440 ; 0.169 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1303 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1642 ; 0.080 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 64 ; 0.136 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 2 ; 0.031 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.308 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 23 ; 0.205 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.161 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1895 ; 0.770 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 720 ; 0.127 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2723 ; 1.062 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2341 ; 0.511 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1229 ; 1.558 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2171 ; 0.589 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 991 ; 2.457 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3562 ; 0.921 ; 4.500 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 56 REMARK 3 ORIGIN FOR THE GROUP (A): 41.6192 45.6685 32.8653 REMARK 3 T TENSOR REMARK 3 T11: -0.1111 T22: -0.0710 REMARK 3 T33: -0.1037 T12: 0.0592 REMARK 3 T13: -0.0635 T23: 0.0257 REMARK 3 L TENSOR REMARK 3 L11: 0.2774 L22: 3.9616 REMARK 3 L33: 6.5059 L12: 0.5559 REMARK 3 L13: 0.5230 L23: 2.7930 REMARK 3 S TENSOR REMARK 3 S11: 0.1785 S12: 0.0020 S13: -0.0833 REMARK 3 S21: 0.4854 S22: 0.1853 S23: -0.3290 REMARK 3 S31: 0.4444 S32: 0.2958 S33: -0.3638 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 315 REMARK 3 ORIGIN FOR THE GROUP (A): 34.5903 52.9788 23.3202 REMARK 3 T TENSOR REMARK 3 T11: -0.1502 T22: -0.0821 REMARK 3 T33: -0.0772 T12: 0.0230 REMARK 3 T13: -0.0133 T23: 0.0378 REMARK 3 L TENSOR REMARK 3 L11: 0.3567 L22: 1.4189 REMARK 3 L33: 3.2914 L12: 0.0995 REMARK 3 L13: -0.2076 L23: 1.3867 REMARK 3 S TENSOR REMARK 3 S11: 0.0107 S12: 0.0370 S13: -0.0341 REMARK 3 S21: 0.0339 S22: 0.0110 S23: -0.0347 REMARK 3 S31: -0.0066 S32: 0.0067 S33: -0.0217 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 316 A 330 REMARK 3 ORIGIN FOR THE GROUP (A): 51.4345 70.9997 8.8889 REMARK 3 T TENSOR REMARK 3 T11: 0.2086 T22: 0.0551 REMARK 3 T33: 0.1196 T12: -0.0918 REMARK 3 T13: 0.1245 T23: 0.0323 REMARK 3 L TENSOR REMARK 3 L11: 13.0051 L22: 19.5184 REMARK 3 L33: 20.6560 L12: -15.6305 REMARK 3 L13: -10.4986 L23: 14.5979 REMARK 3 S TENSOR REMARK 3 S11: -0.3659 S12: 0.2740 S13: 0.5842 REMARK 3 S21: 0.4587 S22: 0.5341 S23: 0.3956 REMARK 3 S31: -1.5362 S32: 0.4522 S33: -0.1682 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 336 A 351 REMARK 3 ORIGIN FOR THE GROUP (A): 54.8298 63.8044 15.2687 REMARK 3 T TENSOR REMARK 3 T11: -0.0002 T22: 0.1052 REMARK 3 T33: 0.1562 T12: -0.1106 REMARK 3 T13: 0.0534 T23: 0.1202 REMARK 3 L TENSOR REMARK 3 L11: 9.7396 L22: 24.4718 REMARK 3 L33: 13.6975 L12: -2.9614 REMARK 3 L13: -3.4356 L23: 11.6029 REMARK 3 S TENSOR REMARK 3 S11: 0.0473 S12: -0.7480 S13: -0.2483 REMARK 3 S21: 0.4873 S22: 0.1912 S23: -1.8990 REMARK 3 S31: -0.2983 S32: 1.0862 S33: -0.2385 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 360 A 360 REMARK 3 ORIGIN FOR THE GROUP (A): 36.3265 50.5148 27.2597 REMARK 3 T TENSOR REMARK 3 T11: -0.1708 T22: -0.1313 REMARK 3 T33: -0.1582 T12: 0.0243 REMARK 3 T13: -0.0216 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 8.1985 L22: 1.5401 REMARK 3 L33: 32.7516 L12: -3.1015 REMARK 3 L13: -15.5369 L23: 4.7761 REMARK 3 S TENSOR REMARK 3 S11: -0.0442 S12: 1.0276 S13: -0.0052 REMARK 3 S21: -0.0282 S22: 0.3954 S23: 0.0888 REMARK 3 S31: 0.8764 S32: -0.6014 S33: -0.3512 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1XHC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-SEP-04. REMARK 100 THE DEPOSITION ID IS D_1000030361. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 3.8; 3.8 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 17-ID; 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000; 1.000 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210; ADSC QUANTUM REMARK 200 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22114 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.47400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1F3P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14%W/V PEG-4000, 0.15M SODIUM REMARK 280 CHLORIDE, 0.15M MAGNESIUM CHLORIDE, 0.1M SODIUM ACETATE, REMARK 280 MODIFIED MICROBATCH, TEMPERATURE 315K, PH 3.8. 18%W/V PEG-4000, REMARK 280 0.15M SODIUM CHLORIDE, 0.15M MAGNESIUM CHLORIDE, 0.1M SODIUM REMARK 280 ACETATE, MODIFIED MICROBATCH, TEMPERATURE 315K, PH 3.8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.16750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.92450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.86850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.92450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.16750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.86850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). THE BIOLOGICAL UNIT IS REMARK 300 UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 GLU A 331 REMARK 465 ASN A 332 REMARK 465 GLY A 333 REMARK 465 LYS A 334 REMARK 465 ILE A 335 REMARK 465 LYS A 352 REMARK 465 GLU A 353 REMARK 465 ILE A 354 REMARK 465 LEU A 355 REMARK 465 ASP A 356 REMARK 465 PHE A 357 REMARK 465 TYR A 358 REMARK 465 SER A 359 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 17 CE NZ REMARK 470 ARG A 53 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 63 NE CZ NH1 NH2 REMARK 470 LYS A 64 CB CG CD CE NZ REMARK 470 ARG A 106 NE CZ NH1 NH2 REMARK 470 GLN A 109 CG CD OE1 NE2 REMARK 470 GLU A 175 CG CD OE1 OE2 REMARK 470 LYS A 182 CE NZ REMARK 470 GLU A 203 CD OE1 OE2 REMARK 470 ARG A 232 NE CZ NH1 NH2 REMARK 470 ARG A 291 CD NE CZ NH1 NH2 REMARK 470 ARG A 292 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 296 CG CD CE NZ REMARK 470 LYS A 303 CE NZ REMARK 470 LYS A 306 CD CE NZ REMARK 470 LYS A 316 CG CD CE NZ REMARK 470 LYS A 320 CE NZ REMARK 470 LYS A 346 CD CE NZ REMARK 470 LYS A 349 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 254 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 120 -52.06 -146.00 REMARK 500 SER A 265 54.69 36.55 REMARK 500 ASP A 343 85.97 -153.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 82 LYS A 83 -30.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 360 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PFU-1140779-001 RELATED DB: TARGETDB DBREF 1XHC A 2 359 UNP Q8U1K9 Q8U1K9_PYRFU 2 359 SEQADV 1XHC ALA A -7 UNP Q8U1K9 EXPRESSION TAG SEQADV 1XHC HIS A -6 UNP Q8U1K9 EXPRESSION TAG SEQADV 1XHC HIS A -5 UNP Q8U1K9 EXPRESSION TAG SEQADV 1XHC HIS A -4 UNP Q8U1K9 EXPRESSION TAG SEQADV 1XHC HIS A -3 UNP Q8U1K9 EXPRESSION TAG SEQADV 1XHC HIS A -2 UNP Q8U1K9 EXPRESSION TAG SEQADV 1XHC HIS A -1 UNP Q8U1K9 EXPRESSION TAG SEQADV 1XHC GLY A 0 UNP Q8U1K9 EXPRESSION TAG SEQADV 1XHC SER A 1 UNP Q8U1K9 EXPRESSION TAG SEQRES 1 A 367 ALA HIS HIS HIS HIS HIS HIS GLY SER LYS VAL VAL ILE SEQRES 2 A 367 VAL GLY ASN GLY PRO GLY GLY PHE GLU LEU ALA LYS GLN SEQRES 3 A 367 LEU SER GLN THR TYR GLU VAL THR VAL ILE ASP LYS GLU SEQRES 4 A 367 PRO VAL PRO TYR TYR SER LYS PRO MET LEU SER HIS TYR SEQRES 5 A 367 ILE ALA GLY PHE ILE PRO ARG ASN ARG LEU PHE PRO TYR SEQRES 6 A 367 SER LEU ASP TRP TYR ARG LYS ARG GLY ILE GLU ILE ARG SEQRES 7 A 367 LEU ALA GLU GLU ALA LYS LEU ILE ASP ARG GLY ARG LYS SEQRES 8 A 367 VAL VAL ILE THR GLU LYS GLY GLU VAL PRO TYR ASP THR SEQRES 9 A 367 LEU VAL LEU ALA THR GLY ALA ARG ALA ARG GLU PRO GLN SEQRES 10 A 367 ILE LYS GLY LYS GLU TYR LEU LEU THR LEU ARG THR ILE SEQRES 11 A 367 PHE ASP ALA ASP ARG ILE LYS GLU SER ILE GLU ASN SER SEQRES 12 A 367 GLY GLU ALA ILE ILE ILE GLY GLY GLY PHE ILE GLY LEU SEQRES 13 A 367 GLU LEU ALA GLY ASN LEU ALA GLU ALA GLY TYR HIS VAL SEQRES 14 A 367 LYS LEU ILE HIS ARG GLY ALA MET PHE LEU GLY LEU ASP SEQRES 15 A 367 GLU GLU LEU SER ASN MET ILE LYS ASP MET LEU GLU GLU SEQRES 16 A 367 THR GLY VAL LYS PHE PHE LEU ASN SER GLU LEU LEU GLU SEQRES 17 A 367 ALA ASN GLU GLU GLY VAL LEU THR ASN SER GLY PHE ILE SEQRES 18 A 367 GLU GLY LYS VAL LYS ILE CYS ALA ILE GLY ILE VAL PRO SEQRES 19 A 367 ASN VAL ASP LEU ALA ARG ARG SER GLY ILE HIS THR GLY SEQRES 20 A 367 ARG GLY ILE LEU ILE ASP ASP ASN PHE ARG THR SER ALA SEQRES 21 A 367 LYS ASP VAL TYR ALA ILE GLY ASP CYS ALA GLU TYR SER SEQRES 22 A 367 GLY ILE ILE ALA GLY THR ALA LYS ALA ALA MET GLU GLN SEQRES 23 A 367 ALA ARG VAL LEU ALA ASP ILE LEU LYS GLY GLU PRO ARG SEQRES 24 A 367 ARG TYR ASN PHE LYS PHE ARG SER THR VAL PHE LYS PHE SEQRES 25 A 367 GLY LYS LEU GLN ILE ALA ILE ILE GLY ASN THR LYS GLY SEQRES 26 A 367 GLU GLY LYS TRP ILE GLU ASP ASN THR LYS VAL PHE TYR SEQRES 27 A 367 GLU ASN GLY LYS ILE ILE GLY ALA VAL VAL PHE ASN ASP SEQRES 28 A 367 ILE ARG LYS ALA THR LYS LEU GLU LYS GLU ILE LEU ASP SEQRES 29 A 367 PHE TYR SER HET FAD A 360 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 HOH *31(H2 O) HELIX 1 1 GLY A 9 SER A 20 1 12 HELIX 2 2 MET A 40 ALA A 46 1 7 HELIX 3 3 PRO A 50 PHE A 55 5 6 HELIX 4 4 SER A 58 GLY A 66 1 9 HELIX 5 5 GLY A 112 GLU A 114 5 3 HELIX 6 6 THR A 121 GLY A 136 1 16 HELIX 7 7 GLY A 144 ALA A 157 1 14 HELIX 8 8 ASP A 174 THR A 188 1 15 HELIX 9 9 VAL A 228 SER A 234 1 7 HELIX 10 10 THR A 271 LYS A 287 1 17 HELIX 11 11 ASP A 343 GLU A 351 1 9 SHEET 1 A 5 ILE A 67 ARG A 70 0 SHEET 2 A 5 GLU A 24 ILE A 28 1 N VAL A 27 O ARG A 70 SHEET 3 A 5 LYS A 2 VAL A 6 1 N ILE A 5 O ILE A 28 SHEET 4 A 5 THR A 96 LEU A 99 1 O VAL A 98 N VAL A 4 SHEET 5 A 5 VAL A 255 ALA A 257 1 O TYR A 256 N LEU A 99 SHEET 1 B 3 ALA A 75 ASP A 79 0 SHEET 2 B 3 VAL A 84 THR A 87 -1 O ILE A 86 N LEU A 77 SHEET 3 B 3 GLU A 91 PRO A 93 -1 O VAL A 92 N VAL A 85 SHEET 1 C 2 ALA A 103 ALA A 105 0 SHEET 2 C 2 ILE A 224 PRO A 226 -1 O VAL A 225 N ARG A 104 SHEET 1 D 5 LEU A 116 LEU A 117 0 SHEET 2 D 5 LYS A 218 ALA A 221 1 O CYS A 220 N LEU A 117 SHEET 3 D 5 GLU A 137 GLY A 142 1 N ILE A 141 O ALA A 221 SHEET 4 D 5 HIS A 160 ILE A 164 1 O ILE A 164 N ILE A 140 SHEET 5 D 5 VAL A 190 PHE A 193 1 O PHE A 193 N LEU A 163 SHEET 1 E 3 LEU A 198 ALA A 201 0 SHEET 2 E 3 GLY A 205 THR A 208 -1 O LEU A 207 N GLU A 200 SHEET 3 E 3 GLY A 211 GLU A 214 -1 O GLY A 211 N THR A 208 SHEET 1 F 2 ILE A 242 LEU A 243 0 SHEET 2 F 2 ALA A 262 GLU A 263 1 O GLU A 263 N ILE A 242 SHEET 1 G 5 SER A 299 PHE A 304 0 SHEET 2 G 5 LEU A 307 GLY A 313 -1 O LEU A 307 N PHE A 304 SHEET 3 G 5 GLY A 337 PHE A 341 -1 O ALA A 338 N ILE A 312 SHEET 4 G 5 THR A 326 PHE A 329 -1 N PHE A 329 O GLY A 337 SHEET 5 G 5 GLY A 319 GLU A 323 -1 N LYS A 320 O VAL A 328 SITE 1 AC1 29 GLY A 7 GLY A 9 PRO A 10 GLY A 11 SITE 2 AC1 29 ASP A 29 LYS A 30 LYS A 38 PRO A 39 SITE 3 AC1 29 GLU A 73 GLU A 74 ALA A 75 ALA A 100 SITE 4 AC1 29 THR A 101 GLY A 102 ALA A 103 LEU A 119 SITE 5 AC1 29 ARG A 120 PHE A 145 ILE A 146 GLU A 149 SITE 6 AC1 29 GLY A 259 ASP A 260 GLY A 270 THR A 271 SITE 7 AC1 29 ALA A 272 PHE A 302 HOH A 361 HOH A 362 SITE 8 AC1 29 HOH A 388 CRYST1 60.335 73.737 95.849 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016600 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013600 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010400 0.00000