HEADER OXIDOREDUCTASE 20-SEP-04 1XHL TITLE CRYSTAL STRUCTURE OF PUTATIVE TROPINONE REDUCTASE-II FROM TITLE 2 CAENORHABDITIS ELEGANS WITH COFACTOR AND SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY MEMBER (5L265), COMPND 3 PUTATIVE TROPINONE REDUCTASE-II; COMPND 4 CHAIN: A, B; COMPND 5 EC: 1.1.1.236; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: F25D1.5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS PARALLEL BETA-SHEET OF SEVEN STRANDS IN THE ORDER 3214567, THREE KEYWDS 2 ALPHA-HELICES ON EITHER SIDE OF BETA-SHEET, SEVENTH ALPHA-HELIX ON KEYWDS 3 TOP OF BETA-SHEET, STRUCTURAL GENOMICS, PROTEIN STRUCTURE KEYWDS 4 INITIATIVE, SCSG, PSI, SOUTHEAST COLLABORATORY FOR STRUCTURAL KEYWDS 5 GENOMICS, SECSG, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.SCHORMANN,E.KARPOVA,J.ZHOU,Y.ZHANG,J.SYMERSKY,R.BUNZEL,W.-Y.HUANG, AUTHOR 2 A.ARABSHAHI,S.QIU,C.-H.LUAN,R.GRAY,M.CARSON,J.TSAO,M.LUO,D.JOHNSON, AUTHOR 3 S.LU,G.LIN,D.LUO,Z.CAO,S.LI,A.MCKINSTRY,Q.SHANG,Y.-J.CHEN,T.BRAY, AUTHOR 4 L.NAGY,L.DELUCAS,SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS AUTHOR 5 (SECSG) REVDAT 5 23-AUG-23 1XHL 1 REMARK SEQADV REVDAT 4 13-JUL-11 1XHL 1 VERSN REVDAT 3 24-FEB-09 1XHL 1 VERSN REVDAT 2 01-FEB-05 1XHL 1 AUTHOR KEYWDS REMARK REVDAT 1 28-SEP-04 1XHL 0 JRNL AUTH N.SCHORMANN,E.KARPOVA,J.ZHOU,Y.ZHANG,J.SYMERSKY,R.BUNZEL, JRNL AUTH 2 W.-Y.HUANG,A.ARABSHAHI,S.QIU,C.-H.LUAN,R.GRAY,M.CARSON, JRNL AUTH 3 J.TSAO,M.LUO,D.JOHNSON,S.LU,G.LIN,D.LUO,Z.CAO,S.LI, JRNL AUTH 4 A.MCKINSTRY,Q.SHANG,Y.-J.CHEN,T.BRAY,L.NAGY,L.DELUCAS JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE TROPINONE REDUCTASE-II FROM JRNL TITL 2 CAENORHABDITIS ELEGANS WITH COFACTOR AND SUBSTRATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1762392.760 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 37486 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1862 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5419 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 290 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4068 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 116 REMARK 3 SOLVENT ATOMS : 234 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.49000 REMARK 3 B22 (A**2) : -2.49000 REMARK 3 B33 (A**2) : 4.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.24 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.33 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.510 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.010 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.580 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.990 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.860 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 37.40 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NDP.PAR REMARK 3 PARAMETER FILE 4 : TNE.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NDP.TOP REMARK 3 TOPOLOGY FILE 4 : TNE.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE PROTEIN WAS PURIFIED WITH THE HIS REMARK 3 -TAG LEFT INTACT. THE HIS-TAG (FIRST 20 AMINO ACIDS), PLUS THE REMARK 3 FIRST TWO RESIDUES (MET1,ALA2) AND THE LAST RESIDUE (GLN277)OF REMARK 3 THE REGULAR PROTEIN SEQUENCE ARE DISORDERED AND NOT VISIBLE IN REMARK 3 THE ELECTRON DENSITY. THE RESIDUE NUMBERING IS BASED ON THE REMARK 3 ORIGINAL PROTEIN SEQUENCE. REMARK 4 REMARK 4 1XHL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-04. REMARK 100 THE DEPOSITION ID IS D_1000030370. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39301 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : 0.08400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.32300 REMARK 200 R SYM FOR SHELL (I) : 0.32300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: THE SEARCH MODEL WAS A MODEL GENERATED BY THE REMARK 200 SWISS-MODEL SERVER BASED ON PDB ENTRIES 1SPX AND 1RWB. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 65% MPD, 0.1M MES, PH 6.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.29550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 54.79450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.79450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.64775 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.79450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 54.79450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 121.94325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.79450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.79450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.64775 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 54.79450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.79450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 121.94325 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.29550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 23120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -118.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -109.58900 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 109.58900 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLN A 277 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLN B 277 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 104 -164.20 60.37 REMARK 500 PHE A 120 -57.63 -133.54 REMARK 500 SER A 145 -136.24 -102.70 REMARK 500 THR A 195 -148.05 -145.02 REMARK 500 ASN B 104 -162.86 61.08 REMARK 500 PHE B 120 -59.87 -131.68 REMARK 500 LYS B 131 -71.25 -32.03 REMARK 500 SER B 145 -135.79 -91.88 REMARK 500 THR B 195 -146.88 -129.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 1278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP B 2278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TNE A 1279 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TNE B 2279 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SPX RELATED DB: PDB REMARK 900 A C. ELEGANS PROTEIN (PUTATIVE GLUCOSE DEHYDROGENASE) FROM THE SAME REMARK 900 FAMILY (SDR FAMILY). REMARK 900 RELATED ID: 1OOE RELATED DB: PDB REMARK 900 A C. ELEGANS PROTEIN (DIHYDROPTERIDINE REDUCTASE) FROM THE SAME REMARK 900 FAMILY (SDR FAMILY). REMARK 900 RELATED ID: 1IPF RELATED DB: PDB REMARK 900 TROPINONE REDUCTASE-II FROM DATURA STRAMONIUM WITH COFACTOR AND REMARK 900 SUBSTRATE. REMARK 900 RELATED ID: F25D1.5 RELATED DB: TARGETDB DBREF 1XHL A 1 277 UNP Q19774 Q19774_CAEEL 1 277 DBREF 1XHL B 1 277 UNP Q19774 Q19774_CAEEL 1 277 SEQADV 1XHL MET A -19 UNP Q19774 EXPRESSION TAG SEQADV 1XHL GLY A -18 UNP Q19774 EXPRESSION TAG SEQADV 1XHL SER A -17 UNP Q19774 EXPRESSION TAG SEQADV 1XHL SER A -16 UNP Q19774 EXPRESSION TAG SEQADV 1XHL HIS A -15 UNP Q19774 EXPRESSION TAG SEQADV 1XHL HIS A -14 UNP Q19774 EXPRESSION TAG SEQADV 1XHL HIS A -13 UNP Q19774 EXPRESSION TAG SEQADV 1XHL HIS A -12 UNP Q19774 EXPRESSION TAG SEQADV 1XHL HIS A -11 UNP Q19774 EXPRESSION TAG SEQADV 1XHL HIS A -10 UNP Q19774 EXPRESSION TAG SEQADV 1XHL SER A -9 UNP Q19774 EXPRESSION TAG SEQADV 1XHL SER A -8 UNP Q19774 EXPRESSION TAG SEQADV 1XHL GLY A -7 UNP Q19774 EXPRESSION TAG SEQADV 1XHL LEU A -6 UNP Q19774 EXPRESSION TAG SEQADV 1XHL VAL A -5 UNP Q19774 EXPRESSION TAG SEQADV 1XHL PRO A -4 UNP Q19774 EXPRESSION TAG SEQADV 1XHL ARG A -3 UNP Q19774 EXPRESSION TAG SEQADV 1XHL GLY A -2 UNP Q19774 EXPRESSION TAG SEQADV 1XHL SER A -1 UNP Q19774 EXPRESSION TAG SEQADV 1XHL HIS A 0 UNP Q19774 EXPRESSION TAG SEQADV 1XHL MET B -19 UNP Q19774 EXPRESSION TAG SEQADV 1XHL GLY B -18 UNP Q19774 EXPRESSION TAG SEQADV 1XHL SER B -17 UNP Q19774 EXPRESSION TAG SEQADV 1XHL SER B -16 UNP Q19774 EXPRESSION TAG SEQADV 1XHL HIS B -15 UNP Q19774 EXPRESSION TAG SEQADV 1XHL HIS B -14 UNP Q19774 EXPRESSION TAG SEQADV 1XHL HIS B -13 UNP Q19774 EXPRESSION TAG SEQADV 1XHL HIS B -12 UNP Q19774 EXPRESSION TAG SEQADV 1XHL HIS B -11 UNP Q19774 EXPRESSION TAG SEQADV 1XHL HIS B -10 UNP Q19774 EXPRESSION TAG SEQADV 1XHL SER B -9 UNP Q19774 EXPRESSION TAG SEQADV 1XHL SER B -8 UNP Q19774 EXPRESSION TAG SEQADV 1XHL GLY B -7 UNP Q19774 EXPRESSION TAG SEQADV 1XHL LEU B -6 UNP Q19774 EXPRESSION TAG SEQADV 1XHL VAL B -5 UNP Q19774 EXPRESSION TAG SEQADV 1XHL PRO B -4 UNP Q19774 EXPRESSION TAG SEQADV 1XHL ARG B -3 UNP Q19774 EXPRESSION TAG SEQADV 1XHL GLY B -2 UNP Q19774 EXPRESSION TAG SEQADV 1XHL SER B -1 UNP Q19774 EXPRESSION TAG SEQADV 1XHL HIS B 0 UNP Q19774 EXPRESSION TAG SEQRES 1 A 297 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 297 LEU VAL PRO ARG GLY SER HIS MET ALA ARG PHE SER GLY SEQRES 3 A 297 LYS SER VAL ILE ILE THR GLY SER SER ASN GLY ILE GLY SEQRES 4 A 297 ARG SER ALA ALA VAL ILE PHE ALA LYS GLU GLY ALA GLN SEQRES 5 A 297 VAL THR ILE THR GLY ARG ASN GLU ASP ARG LEU GLU GLU SEQRES 6 A 297 THR LYS GLN GLN ILE LEU LYS ALA GLY VAL PRO ALA GLU SEQRES 7 A 297 LYS ILE ASN ALA VAL VAL ALA ASP VAL THR GLU ALA SER SEQRES 8 A 297 GLY GLN ASP ASP ILE ILE ASN THR THR LEU ALA LYS PHE SEQRES 9 A 297 GLY LYS ILE ASP ILE LEU VAL ASN ASN ALA GLY ALA ASN SEQRES 10 A 297 LEU ALA ASP GLY THR ALA ASN THR ASP GLN PRO VAL GLU SEQRES 11 A 297 LEU TYR GLN LYS THR PHE LYS LEU ASN PHE GLN ALA VAL SEQRES 12 A 297 ILE GLU MET THR GLN LYS THR LYS GLU HIS LEU ILE LYS SEQRES 13 A 297 THR LYS GLY GLU ILE VAL ASN VAL SER SER ILE VAL ALA SEQRES 14 A 297 GLY PRO GLN ALA HIS SER GLY TYR PRO TYR TYR ALA CYS SEQRES 15 A 297 ALA LYS ALA ALA LEU ASP GLN TYR THR ARG CYS THR ALA SEQRES 16 A 297 ILE ASP LEU ILE GLN HIS GLY VAL ARG VAL ASN SER VAL SEQRES 17 A 297 SER PRO GLY ALA VAL ALA THR GLY PHE MET GLY ALA MET SEQRES 18 A 297 GLY LEU PRO GLU THR ALA SER ASP LYS LEU TYR SER PHE SEQRES 19 A 297 ILE GLY SER ARG LYS GLU CYS ILE PRO VAL GLY HIS CYS SEQRES 20 A 297 GLY LYS PRO GLU GLU ILE ALA ASN ILE ILE VAL PHE LEU SEQRES 21 A 297 ALA ASP ARG ASN LEU SER SER TYR ILE ILE GLY GLN SER SEQRES 22 A 297 ILE VAL ALA ASP GLY GLY SER THR LEU VAL MET GLY MET SEQRES 23 A 297 GLN THR HIS ASP LEU MET SER VAL LEU SER GLN SEQRES 1 B 297 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 297 LEU VAL PRO ARG GLY SER HIS MET ALA ARG PHE SER GLY SEQRES 3 B 297 LYS SER VAL ILE ILE THR GLY SER SER ASN GLY ILE GLY SEQRES 4 B 297 ARG SER ALA ALA VAL ILE PHE ALA LYS GLU GLY ALA GLN SEQRES 5 B 297 VAL THR ILE THR GLY ARG ASN GLU ASP ARG LEU GLU GLU SEQRES 6 B 297 THR LYS GLN GLN ILE LEU LYS ALA GLY VAL PRO ALA GLU SEQRES 7 B 297 LYS ILE ASN ALA VAL VAL ALA ASP VAL THR GLU ALA SER SEQRES 8 B 297 GLY GLN ASP ASP ILE ILE ASN THR THR LEU ALA LYS PHE SEQRES 9 B 297 GLY LYS ILE ASP ILE LEU VAL ASN ASN ALA GLY ALA ASN SEQRES 10 B 297 LEU ALA ASP GLY THR ALA ASN THR ASP GLN PRO VAL GLU SEQRES 11 B 297 LEU TYR GLN LYS THR PHE LYS LEU ASN PHE GLN ALA VAL SEQRES 12 B 297 ILE GLU MET THR GLN LYS THR LYS GLU HIS LEU ILE LYS SEQRES 13 B 297 THR LYS GLY GLU ILE VAL ASN VAL SER SER ILE VAL ALA SEQRES 14 B 297 GLY PRO GLN ALA HIS SER GLY TYR PRO TYR TYR ALA CYS SEQRES 15 B 297 ALA LYS ALA ALA LEU ASP GLN TYR THR ARG CYS THR ALA SEQRES 16 B 297 ILE ASP LEU ILE GLN HIS GLY VAL ARG VAL ASN SER VAL SEQRES 17 B 297 SER PRO GLY ALA VAL ALA THR GLY PHE MET GLY ALA MET SEQRES 18 B 297 GLY LEU PRO GLU THR ALA SER ASP LYS LEU TYR SER PHE SEQRES 19 B 297 ILE GLY SER ARG LYS GLU CYS ILE PRO VAL GLY HIS CYS SEQRES 20 B 297 GLY LYS PRO GLU GLU ILE ALA ASN ILE ILE VAL PHE LEU SEQRES 21 B 297 ALA ASP ARG ASN LEU SER SER TYR ILE ILE GLY GLN SER SEQRES 22 B 297 ILE VAL ALA ASP GLY GLY SER THR LEU VAL MET GLY MET SEQRES 23 B 297 GLN THR HIS ASP LEU MET SER VAL LEU SER GLN HET NDP A1278 48 HET TNE A1279 10 HET NDP B2278 48 HET TNE B2279 10 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM TNE 8-METHYL-8-AZABICYCLO[3,2,1]OCTAN-3-ONE HETSYN TNE TROPINONE FORMUL 3 NDP 2(C21 H30 N7 O17 P3) FORMUL 4 TNE 2(C8 H13 N O) FORMUL 7 HOH *234(H2 O) HELIX 1 1 ASN A 16 GLU A 29 1 14 HELIX 2 2 ASN A 39 ALA A 53 1 15 HELIX 3 3 PRO A 56 GLU A 58 5 3 HELIX 4 4 GLU A 69 GLY A 85 1 17 HELIX 5 5 ALA A 103 GLN A 107 5 5 HELIX 6 6 PRO A 108 PHE A 120 1 13 HELIX 7 7 PHE A 120 THR A 137 1 18 HELIX 8 8 SER A 146 GLY A 150 5 5 HELIX 9 9 TYR A 157 ILE A 179 1 23 HELIX 10 10 GLN A 180 GLY A 182 5 3 HELIX 11 11 GLY A 196 MET A 201 1 6 HELIX 12 12 PRO A 204 ARG A 218 1 15 HELIX 13 13 LYS A 229 ASP A 242 1 14 HELIX 14 14 ASP A 242 SER A 247 1 6 HELIX 15 15 GLY A 259 VAL A 263 5 5 HELIX 16 16 MET A 264 HIS A 269 5 6 HELIX 17 17 ASP A 270 LEU A 275 1 6 HELIX 18 18 ASN B 16 GLU B 29 1 14 HELIX 19 19 ASN B 39 ALA B 53 1 15 HELIX 20 20 PRO B 56 GLU B 58 5 3 HELIX 21 21 GLU B 69 GLY B 85 1 17 HELIX 22 22 ALA B 103 GLN B 107 5 5 HELIX 23 23 PRO B 108 PHE B 120 1 13 HELIX 24 24 PHE B 120 LYS B 138 1 19 HELIX 25 25 SER B 146 GLY B 150 5 5 HELIX 26 26 TYR B 157 ILE B 179 1 23 HELIX 27 27 GLN B 180 GLY B 182 5 3 HELIX 28 28 GLY B 196 MET B 201 1 6 HELIX 29 29 PRO B 204 ARG B 218 1 15 HELIX 30 30 LYS B 229 ALA B 241 1 13 HELIX 31 31 ASP B 242 SER B 247 1 6 HELIX 32 32 GLY B 259 VAL B 263 5 5 HELIX 33 33 MET B 264 HIS B 269 5 6 HELIX 34 34 ASP B 270 LEU B 275 1 6 SHEET 1 A 7 ILE A 60 VAL A 64 0 SHEET 2 A 7 GLN A 32 GLY A 37 1 N VAL A 33 O ASN A 61 SHEET 3 A 7 SER A 8 ILE A 11 1 N VAL A 9 O GLN A 32 SHEET 4 A 7 ILE A 89 ASN A 92 1 O VAL A 91 N ILE A 10 SHEET 5 A 7 GLU A 140 VAL A 144 1 O VAL A 142 N LEU A 90 SHEET 6 A 7 ARG A 184 PRO A 190 1 O ASN A 186 N ASN A 143 SHEET 7 A 7 SER A 253 ALA A 256 1 O ILE A 254 N SER A 189 SHEET 1 B 7 ILE B 60 VAL B 64 0 SHEET 2 B 7 GLN B 32 GLY B 37 1 N VAL B 33 O ASN B 61 SHEET 3 B 7 SER B 8 ILE B 11 1 N VAL B 9 O THR B 34 SHEET 4 B 7 ILE B 89 ASN B 92 1 O VAL B 91 N ILE B 10 SHEET 5 B 7 GLU B 140 VAL B 144 1 O VAL B 142 N LEU B 90 SHEET 6 B 7 ARG B 184 PRO B 190 1 O ASN B 186 N ASN B 143 SHEET 7 B 7 SER B 253 ALA B 256 1 O ALA B 256 N SER B 189 CISPEP 1 GLY A 150 PRO A 151 0 0.31 CISPEP 2 GLY B 150 PRO B 151 0 0.11 SITE 1 AC1 33 GLY A 13 SER A 14 SER A 15 ASN A 16 SITE 2 AC1 33 GLY A 17 ILE A 18 GLY A 37 ARG A 38 SITE 3 AC1 33 ASN A 39 ARG A 42 ALA A 65 ASP A 66 SITE 4 AC1 33 VAL A 67 ASN A 93 ALA A 94 GLY A 95 SITE 5 AC1 33 LEU A 118 SER A 145 SER A 146 TYR A 160 SITE 6 AC1 33 LYS A 164 PRO A 190 GLY A 191 ALA A 192 SITE 7 AC1 33 VAL A 193 THR A 195 GLY A 196 PHE A 197 SITE 8 AC1 33 TNE A1279 HOH A1291 HOH A1316 HOH A1322 SITE 9 AC1 33 HOH A1325 SITE 1 AC2 36 GLY B 13 SER B 14 SER B 15 ASN B 16 SITE 2 AC2 36 GLY B 17 ILE B 18 GLY B 37 ARG B 38 SITE 3 AC2 36 ASN B 39 ARG B 42 ALA B 65 ASP B 66 SITE 4 AC2 36 VAL B 67 ASN B 93 ALA B 94 GLY B 95 SITE 5 AC2 36 LEU B 118 VAL B 144 SER B 145 SER B 146 SITE 6 AC2 36 TYR B 160 LYS B 164 PRO B 190 GLY B 191 SITE 7 AC2 36 ALA B 192 VAL B 193 THR B 195 GLY B 196 SITE 8 AC2 36 PHE B 197 TNE B2279 HOH B2280 HOH B2282 SITE 9 AC2 36 HOH B2291 HOH B2311 HOH B2317 HOH B2385 SITE 1 AC3 5 TYR A 157 GLY A 191 NDP A1278 HOH A1280 SITE 2 AC3 5 HOH A1368 SITE 1 AC4 4 TYR B 157 ALA B 192 PHE B 197 NDP B2278 CRYST1 109.589 109.589 162.591 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009125 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009125 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006150 0.00000