HEADER TRANSFERASE 21-SEP-04 1XI3 TITLE THIAMINE PHOSPHATE PYROPHOSPHORYLASE FROM PYROCOCCUS FURIOSUS PFU- TITLE 2 1255191-001 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIAMINE PHOSPHATE PYROPHOSPHORYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TMP PYROPHOSPHORYLASE, TMP-PPASE, THIAMINE-PHOSPHATE COMPND 5 SYNTHASE; COMPND 6 EC: 2.5.1.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 GENE: THIE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, THIAMINE PHOSPHATE PYROPHOSPHORYLASE, SOUTHEAST KEYWDS 2 COLLABORATORY FOR STRUCTURAL GENOMICS, PYROCOCCUS FURIOSUS, KEYWDS 3 HYPERTHERMOPHILE, PROTEIN STRUCTURE INITIATIVE, PSI, SECSG, KEYWDS 4 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.ZHOU,L.CHEN,W.TEMPEL,Z.-J.LIU,J.HABEL,D.LEE,D.LIN,S.-H.CHANG, AUTHOR 2 B.D.DILLARD,J.C.ENEH,R.C.HOPKINS,F.E.JENNEY JR.,L.-L.C.KELLEY,H.- AUTHOR 3 S.LEE,T.LI,F.L.POOLE II,C.SHAH,F.J.SUGAR,W.B.ARENDALL III, AUTHOR 4 J.S.RICHARDSON,D.C.RICHARDSON,J.P.ROSE,M.W.W.ADAMS,B.-C.WANG, AUTHOR 5 SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS (SECSG) REVDAT 5 23-AUG-23 1XI3 1 REMARK SEQADV LINK REVDAT 4 11-OCT-17 1XI3 1 REMARK REVDAT 3 24-FEB-09 1XI3 1 VERSN REVDAT 2 01-FEB-05 1XI3 1 AUTHOR KEYWDS REMARK REVDAT 1 28-SEP-04 1XI3 0 JRNL AUTH W.ZHOU,L.CHEN,W.TEMPEL,Z.-J.LIU,J.HABEL,D.LEE,D.LIN, JRNL AUTH 2 S.-H.CHANG,B.D.DILLARD,J.C.ENEH,R.C.HOPKINS,F.E.JENNEY JR., JRNL AUTH 3 L.-L.C.KELLEY,H.-S.LEE,T.LI,F.L.POOLE II,C.SHAH,F.J.SUGAR, JRNL AUTH 4 W.B.ARENDALL III,J.S.RICHARDSON,D.C.RICHARDSON,J.P.ROSE, JRNL AUTH 5 M.W.W.ADAMS,B.-C.WANG, JRNL AUTH 6 SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS JRNL TITL THIAMINE PHOSPHATE PYROPHOSPHORYLASE FROM PYROCOCCUS JRNL TITL 2 FURIOSUS PFU-1255191-001 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 50281 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.063 REMARK 3 FREE R VALUE TEST SET COUNT : 1540 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3418 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1870 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.2300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3008 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 264 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01200 REMARK 3 B22 (A**2) : 0.00400 REMARK 3 B33 (A**2) : -0.01600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.098 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.787 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3079 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3034 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4164 ; 1.367 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6994 ; 0.831 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 400 ; 5.348 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;32.796 ;24.240 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 561 ;11.622 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;13.605 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 506 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3408 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 568 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 641 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3073 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1563 ; 0.168 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1869 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 223 ; 0.126 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.336 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 33 ; 0.311 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.101 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2164 ; 2.603 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 832 ; 0.672 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3224 ; 3.090 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2756 ; 1.873 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1131 ; 2.965 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2391 ; 0.889 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 940 ; 4.355 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4238 ; 1.824 ; 3.000 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1XI3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-SEP-04. REMARK 100 THE DEPOSITION ID IS D_1000030388. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50284 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.28100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1G4T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30%V/V PEG 2000 MME, 0.2M AMMONIUM REMARK 280 SULFATE, 0.1M SODIUM ACETATE, PH 4.6, MODIFIED MICROBATCH, REMARK 280 TEMPERATURE 291KK REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.19300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.60500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 76.45150 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.19300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.60500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 76.45150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.19300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.60500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 76.45150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.19300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 40.60500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 76.45150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). THE BIOLOGICAL UNIT IS REMARK 300 UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NI NI B 302 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 463 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 LYS A 133 REMARK 465 THR A 134 REMARK 465 LYS A 135 REMARK 465 GLU A 136 REMARK 465 ALA B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 LYS B 133 REMARK 465 THR B 134 REMARK 465 LYS B 135 REMARK 465 GLU B 136 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CD CE NZ REMARK 470 LYS A 8 CE NZ REMARK 470 LYS A 18 CD CE NZ REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 ARG A 25 NE CZ NH1 NH2 REMARK 470 LYS A 40 CG CD CE NZ REMARK 470 LYS A 52 CE NZ REMARK 470 ASP A 62 OD1 OD2 REMARK 470 GLU A 87 CD OE1 OE2 REMARK 470 GLU A 115 CD OE1 OE2 REMARK 470 LYS A 154 CD CE NZ REMARK 470 GLU A 170 CD OE1 OE2 REMARK 470 GLU A 189 CG CD OE1 OE2 REMARK 470 ARG A 192 CZ NH1 NH2 REMARK 470 LYS A 193 CD CE NZ REMARK 470 LYS A 200 CE NZ REMARK 470 LYS B 6 CD CE NZ REMARK 470 GLU B 22 CD OE1 OE2 REMARK 470 LYS B 40 CG CD CE NZ REMARK 470 GLU B 111 CG CD OE1 OE2 REMARK 470 GLU B 115 CD OE1 OE2 REMARK 470 LYS B 118 CD CE NZ REMARK 470 GLU B 144 CD OE1 OE2 REMARK 470 LYS B 154 CD CE NZ REMARK 470 GLU B 189 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 45 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 45 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP B 69 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 69 -63.23 75.07 REMARK 500 ILE A 182 -74.84 -121.55 REMARK 500 ASP B 69 -61.48 73.37 REMARK 500 ILE B 182 -80.07 -122.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 302 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 26 OE2 REMARK 620 2 GLU B 26 OE1 56.1 REMARK 620 3 GLU B 26 OE2 156.1 147.5 REMARK 620 4 GLU B 26 OE1 147.4 92.4 56.2 REMARK 620 5 GLU B 29 OE1 82.7 109.2 83.2 119.5 REMARK 620 6 GLU B 29 OE2 94.7 75.3 91.5 83.7 51.7 REMARK 620 7 GLU B 29 OE1 83.1 119.3 82.8 109.3 107.2 158.8 REMARK 620 8 GLU B 29 OE2 91.4 83.7 94.8 75.3 158.8 149.5 51.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PFU-1255191-001 RELATED DB: TARGETDB DBREF 1XI3 A 2 207 UNP Q8U192 THIE_PYRFU 2 207 DBREF 1XI3 B 2 207 UNP Q8U192 THIE_PYRFU 2 207 SEQADV 1XI3 ALA A -7 UNP Q8U192 EXPRESSION TAG SEQADV 1XI3 HIS A -6 UNP Q8U192 EXPRESSION TAG SEQADV 1XI3 HIS A -5 UNP Q8U192 EXPRESSION TAG SEQADV 1XI3 HIS A -4 UNP Q8U192 EXPRESSION TAG SEQADV 1XI3 HIS A -3 UNP Q8U192 EXPRESSION TAG SEQADV 1XI3 HIS A -2 UNP Q8U192 EXPRESSION TAG SEQADV 1XI3 HIS A -1 UNP Q8U192 EXPRESSION TAG SEQADV 1XI3 GLY A 0 UNP Q8U192 EXPRESSION TAG SEQADV 1XI3 SER A 1 UNP Q8U192 EXPRESSION TAG SEQADV 1XI3 ALA B -7 UNP Q8U192 EXPRESSION TAG SEQADV 1XI3 HIS B -6 UNP Q8U192 EXPRESSION TAG SEQADV 1XI3 HIS B -5 UNP Q8U192 EXPRESSION TAG SEQADV 1XI3 HIS B -4 UNP Q8U192 EXPRESSION TAG SEQADV 1XI3 HIS B -3 UNP Q8U192 EXPRESSION TAG SEQADV 1XI3 HIS B -2 UNP Q8U192 EXPRESSION TAG SEQADV 1XI3 HIS B -1 UNP Q8U192 EXPRESSION TAG SEQADV 1XI3 GLY B 0 UNP Q8U192 EXPRESSION TAG SEQADV 1XI3 SER B 1 UNP Q8U192 EXPRESSION TAG SEQRES 1 A 215 ALA HIS HIS HIS HIS HIS HIS GLY SER ASN LEU ARG ASN SEQRES 2 A 215 LYS LEU LYS LEU TYR VAL ILE THR ASP ARG ARG LEU LYS SEQRES 3 A 215 PRO GLU VAL GLU SER VAL ARG GLU ALA LEU GLU GLY GLY SEQRES 4 A 215 ALA THR ALA ILE GLN MET ARG ILE LYS ASN ALA PRO THR SEQRES 5 A 215 ARG GLU MET TYR GLU ILE GLY LYS THR LEU ARG GLN LEU SEQRES 6 A 215 THR ARG GLU TYR ASP ALA LEU PHE PHE VAL ASP ASP ARG SEQRES 7 A 215 VAL ASP VAL ALA LEU ALA VAL ASP ALA ASP GLY VAL GLN SEQRES 8 A 215 LEU GLY PRO GLU ASP MET PRO ILE GLU VAL ALA LYS GLU SEQRES 9 A 215 ILE ALA PRO ASN LEU ILE ILE GLY ALA SER VAL TYR SER SEQRES 10 A 215 LEU GLU GLU ALA LEU GLU ALA GLU LYS LYS GLY ALA ASP SEQRES 11 A 215 TYR LEU GLY ALA GLY SER VAL PHE PRO THR LYS THR LYS SEQRES 12 A 215 GLU ASP ALA ARG VAL ILE GLY LEU GLU GLY LEU ARG LYS SEQRES 13 A 215 ILE VAL GLU SER VAL LYS ILE PRO VAL VAL ALA ILE GLY SEQRES 14 A 215 GLY ILE ASN LYS ASP ASN ALA ARG GLU VAL LEU LYS THR SEQRES 15 A 215 GLY VAL ASP GLY ILE ALA VAL ILE SER ALA VAL MET GLY SEQRES 16 A 215 ALA GLU ASP VAL ARG LYS ALA THR GLU GLU LEU ARG LYS SEQRES 17 A 215 ILE VAL GLU GLU VAL LEU GLY SEQRES 1 B 215 ALA HIS HIS HIS HIS HIS HIS GLY SER ASN LEU ARG ASN SEQRES 2 B 215 LYS LEU LYS LEU TYR VAL ILE THR ASP ARG ARG LEU LYS SEQRES 3 B 215 PRO GLU VAL GLU SER VAL ARG GLU ALA LEU GLU GLY GLY SEQRES 4 B 215 ALA THR ALA ILE GLN MET ARG ILE LYS ASN ALA PRO THR SEQRES 5 B 215 ARG GLU MET TYR GLU ILE GLY LYS THR LEU ARG GLN LEU SEQRES 6 B 215 THR ARG GLU TYR ASP ALA LEU PHE PHE VAL ASP ASP ARG SEQRES 7 B 215 VAL ASP VAL ALA LEU ALA VAL ASP ALA ASP GLY VAL GLN SEQRES 8 B 215 LEU GLY PRO GLU ASP MET PRO ILE GLU VAL ALA LYS GLU SEQRES 9 B 215 ILE ALA PRO ASN LEU ILE ILE GLY ALA SER VAL TYR SER SEQRES 10 B 215 LEU GLU GLU ALA LEU GLU ALA GLU LYS LYS GLY ALA ASP SEQRES 11 B 215 TYR LEU GLY ALA GLY SER VAL PHE PRO THR LYS THR LYS SEQRES 12 B 215 GLU ASP ALA ARG VAL ILE GLY LEU GLU GLY LEU ARG LYS SEQRES 13 B 215 ILE VAL GLU SER VAL LYS ILE PRO VAL VAL ALA ILE GLY SEQRES 14 B 215 GLY ILE ASN LYS ASP ASN ALA ARG GLU VAL LEU LYS THR SEQRES 15 B 215 GLY VAL ASP GLY ILE ALA VAL ILE SER ALA VAL MET GLY SEQRES 16 B 215 ALA GLU ASP VAL ARG LYS ALA THR GLU GLU LEU ARG LYS SEQRES 17 B 215 ILE VAL GLU GLU VAL LEU GLY HET SO4 A 301 5 HET UNX A 403 1 HET NI B 302 1 HET UNX B 401 1 HET UNX B 402 1 HETNAM SO4 SULFATE ION HETNAM UNX UNKNOWN ATOM OR ION HETNAM NI NICKEL (II) ION FORMUL 3 SO4 O4 S 2- FORMUL 4 UNX 3(X) FORMUL 5 NI NI 2+ FORMUL 8 HOH *264(H2 O) HELIX 1 1 ASN A 2 LEU A 7 1 6 HELIX 2 2 PRO A 19 GLY A 30 1 12 HELIX 3 3 PRO A 43 TYR A 61 1 19 HELIX 4 4 ARG A 70 ASP A 78 1 9 HELIX 5 5 PRO A 90 ALA A 98 1 9 HELIX 6 6 SER A 109 GLY A 120 1 12 HELIX 7 7 ILE A 141 VAL A 153 1 13 HELIX 8 8 ASN A 167 LYS A 173 1 7 HELIX 9 9 ILE A 182 GLY A 187 1 6 HELIX 10 10 ASP A 190 GLY A 207 1 18 HELIX 11 11 ASN B 2 LEU B 7 1 6 HELIX 12 12 PRO B 19 GLY B 30 1 12 HELIX 13 13 PRO B 43 TYR B 61 1 19 HELIX 14 14 ARG B 70 VAL B 77 1 8 HELIX 15 15 PRO B 90 ALA B 98 1 9 HELIX 16 16 SER B 109 GLY B 120 1 12 HELIX 17 17 ILE B 141 VAL B 153 1 13 HELIX 18 18 ASN B 167 THR B 174 1 8 HELIX 19 19 ILE B 182 GLY B 187 1 6 HELIX 20 20 ASP B 190 GLY B 207 1 18 SHEET 1 A 9 LEU A 9 ILE A 12 0 SHEET 2 A 9 ALA A 34 MET A 37 1 O ALA A 34 N VAL A 11 SHEET 3 A 9 LEU A 64 ASP A 68 1 O PHE A 66 N ILE A 35 SHEET 4 A 9 GLY A 81 LEU A 84 1 O GLN A 83 N VAL A 67 SHEET 5 A 9 ILE A 102 VAL A 107 1 O GLY A 104 N LEU A 84 SHEET 6 A 9 TYR A 123 GLY A 127 1 O GLY A 125 N ALA A 105 SHEET 7 A 9 VAL A 157 ILE A 160 1 O VAL A 158 N LEU A 124 SHEET 8 A 9 GLY A 178 VAL A 181 1 O ALA A 180 N ALA A 159 SHEET 9 A 9 LEU A 9 ILE A 12 1 N TYR A 10 O ILE A 179 SHEET 1 B 9 LEU B 9 ILE B 12 0 SHEET 2 B 9 ALA B 34 MET B 37 1 O ALA B 34 N VAL B 11 SHEET 3 B 9 LEU B 64 ASP B 68 1 O PHE B 66 N ILE B 35 SHEET 4 B 9 GLY B 81 LEU B 84 1 O GLN B 83 N VAL B 67 SHEET 5 B 9 ILE B 102 VAL B 107 1 O GLY B 104 N VAL B 82 SHEET 6 B 9 TYR B 123 ALA B 126 1 O GLY B 125 N ALA B 105 SHEET 7 B 9 VAL B 157 ILE B 160 1 O VAL B 158 N LEU B 124 SHEET 8 B 9 GLY B 178 VAL B 181 1 O ALA B 180 N ALA B 159 SHEET 9 B 9 LEU B 9 ILE B 12 1 N TYR B 10 O ILE B 179 LINK OE2 GLU B 26 NI NI B 302 1555 1555 2.40 LINK OE1 GLU B 26 NI NI B 302 1555 1555 2.35 LINK OE2 GLU B 26 NI NI B 302 2665 1555 2.39 LINK OE1 GLU B 26 NI NI B 302 2665 1555 2.35 LINK OE1 GLU B 29 NI NI B 302 1555 1555 2.37 LINK OE2 GLU B 29 NI NI B 302 1555 1555 2.64 LINK OE1 GLU B 29 NI NI B 302 2665 1555 2.37 LINK OE2 GLU B 29 NI NI B 302 2665 1555 2.64 CISPEP 1 GLY A 127 SER A 128 0 -5.80 CISPEP 2 GLY B 127 SER B 128 0 -5.92 SITE 1 AC1 7 THR A 132 GLY A 161 GLY A 162 ILE A 182 SITE 2 AC1 7 SER A 183 HOH A 411 HOH A 428 SITE 1 AC2 2 GLU B 26 GLU B 29 SITE 1 AC3 1 SER B 183 SITE 1 AC4 3 GLN B 36 ARG B 38 GLN B 83 SITE 1 AC5 3 PRO A 19 VAL A 21 GLU A 22 CRYST1 72.386 81.210 152.903 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013815 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012314 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006540 0.00000