data_1XJ9
# 
_entry.id   1XJ9 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.381 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   1XJ9         pdb_00001xj9 10.2210/pdb1xj9/pdb 
NDB   UP0006       ?            ?                   
RCSB  RCSB030416   ?            ?                   
WWPDB D_1000030416 ?            ?                   
# 
loop_
_pdbx_database_related.db_name 
_pdbx_database_related.db_id 
_pdbx_database_related.details 
_pdbx_database_related.content_type 
PDB 1PUP 'peptide nucleic acid duplex'                             unspecified 
PDB 1PDT 'Peptide nucleic acid complexed with DNA'                 unspecified 
PDB 1PNN 'peptide nucleic acid/DNA triplex'                        unspecified 
PDB 176D 'peptide nucleic acid complexed with RNA'                 unspecified 
PDB 1NR8 'A D-Lysine-Based Chiral Peptide nucleic acid/DNA Duplex' unspecified 
PDB 1RRU 'peptide nucleic acid with L-Lys in C-terminus'           unspecified 
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        1XJ9 
_pdbx_database_status.recvd_initial_deposition_date   2004-09-23 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    PDBJ 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Petersson, B.' 1 
'Nielsen, B.B.' 2 
'Rasmussen, H.' 3 
'Larsen, I.K.'  4 
'Gajhede, M.'   5 
'Nielsen, P.E.' 6 
'Kastrup, J.S.' 7 
# 
loop_
_citation.id 
_citation.title 
_citation.journal_abbrev 
_citation.journal_volume 
_citation.page_first 
_citation.page_last 
_citation.year 
_citation.journal_id_ASTM 
_citation.country 
_citation.journal_id_ISSN 
_citation.journal_id_CSD 
_citation.book_publisher 
_citation.pdbx_database_id_PubMed 
_citation.pdbx_database_id_DOI 
primary 'Crystal Structure of a Partly Self-Complementary Peptide Nucleic Acid (PNA) Oligomer Showing a Duplex-Triplex Network' 
J.Am.Chem.Soc.   127 1424 1430 2005 JACSAT US 0002-7863 0004 ? 15686374 10.1021/ja0458726  
1       'Crystal structure of a peptide nucleic acid (PNA) duplex at 1.7 A resolution'                                          
Nat.Struct.Biol. 4   98   101  1997 NSBIEW US 1072-8368 2024 ? 9033585  10.1038/nsb0297-98 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Petersson, B.' 1  ? 
primary 'Nielsen, B.B.' 2  ? 
primary 'Rasmussen, H.' 3  ? 
primary 'Larsen, I.K.'  4  ? 
primary 'Gajhede, M.'   5  ? 
primary 'Nielsen, P.E.' 6  ? 
primary 'Kastrup, J.S.' 7  ? 
1       'Rasmussen, H.' 8  ? 
1       'Kastrup, J.S.' 9  ? 
1       'Nielsen, J.N.' 10 ? 
1       'Nielsen, J.M.' 11 ? 
1       'Nielsen, P.E.' 12 ? 
# 
_cell.entry_id           1XJ9 
_cell.length_a           55.600 
_cell.length_b           41.900 
_cell.length_c           30.100 
_cell.angle_alpha        90.00 
_cell.angle_beta         117.70 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         1XJ9 
_symmetry.space_group_name_H-M             'C 1 2 1' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                5 
_symmetry.space_group_name_Hall            ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer syn 'peptide nucleic acid, (H-P(*GPN*TPN*APN*GPN*APN*TPN*CPN*APN*CPN*TPN)-LYS-NH2)' 2803.876 2  ? ? ? ? 
2 water   nat water                                                                           18.015   33 ? ? ? ? 
# 
_entity_name_com.entity_id   1 
_entity_name_com.name        PNA 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   yes 
_entity_poly.pdbx_seq_one_letter_code       '(GPN)(TPN)(APN)(GPN)(APN)(TPN)(CPN)(APN)(CPN)(TPN)K' 
_entity_poly.pdbx_seq_one_letter_code_can   XXXXXXXXXXK 
_entity_poly.pdbx_strand_id                 A,B 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  GPN n 
1 2  TPN n 
1 3  APN n 
1 4  GPN n 
1 5  APN n 
1 6  TPN n 
1 7  CPN n 
1 8  APN n 
1 9  CPN n 
1 10 TPN n 
1 11 LYS n 
# 
_struct_ref.id                         1 
_struct_ref.entity_id                  1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    1XJ9 
_struct_ref.pdbx_db_accession          1XJ9 
_struct_ref.pdbx_db_isoform            ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 1XJ9 A 1 ? 11 ? 1XJ9 101 ? 111 ? 101 111 
2 1 1XJ9 B 1 ? 11 ? 1XJ9 201 ? 211 ? 201 211 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
APN peptide-like        . 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-ADENINE  ? 'C11 H16 N7 O3 1' 294.290 
CPN peptide-like        . 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-CYTOSINE ? 'C10 H16 N5 O4 1' 270.265 
GPN peptide-like        . 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-GUANINE  ? 'C11 H16 N7 O4 1' 310.289 
HOH non-polymer         . WATER                                          ? 'H2 O'            18.015  
LYS 'L-peptide linking' y LYSINE                                         ? 'C6 H15 N2 O2 1'  147.195 
TPN peptide-like        . 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-THYMINE  ? 'C11 H17 N4 O5 1' 285.276 
# 
_exptl.entry_id          1XJ9 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   2 
# 
loop_
_exptl_crystal.id 
_exptl_crystal.density_meas 
_exptl_crystal.density_Matthews 
_exptl_crystal.density_percent_sol 
_exptl_crystal.description 
_exptl_crystal.F_000 
_exptl_crystal.preparation 
1 ? 2.77 55.59 ? ? ? 
2 ? ?    ?     ? ? ? 
# 
loop_
_exptl_crystal_grow.crystal_id 
_exptl_crystal_grow.method 
_exptl_crystal_grow.temp 
_exptl_crystal_grow.temp_details 
_exptl_crystal_grow.pH 
_exptl_crystal_grow.pdbx_details 
_exptl_crystal_grow.pdbx_pH_range 
1 'VAPOR DIFFUSION, HANGING DROP' 293 ? ? 
'crystal 1: magnesium chloride, PEG 8000, glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 293K'         . 
2 'VAPOR DIFFUSION, SITTING DROP' 293 ? ? 
'crystal 2: isopropanol, calcium chloride, acetate, pH 4.8, VAPOR DIFFUSION, SITTING DROP, temperature 293K' . 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.details 
1 1  1 'magnesium chloride' ? ? ? 
1 2  1 'PEG 8000'           ? ? ? 
1 3  1 glycerol             ? ? ? 
1 4  1 H2O                  ? ? ? 
1 5  2 'PEG 8000'           ? ? ? 
1 6  2 H2O                  ? ? ? 
2 7  1 isopropanol          ? ? ? 
2 8  1 'calcium chloride'   ? ? ? 
2 9  1 acetate              ? ? ? 
2 10 1 H2O                  ? ? ? 
2 11 2 isopropanol          ? ? ? 
2 12 2 'calcium chloride'   ? ? ? 
2 13 2 acetate              ? ? ? 
2 14 2 H2O                  ? ? ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           293 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               'IMAGE PLATE' 
_diffrn_detector.type                   MARRESEARCH 
_diffrn_detector.pdbx_collection_date   1998-02-17 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   1.0000 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      SYNCHROTRON 
_diffrn_source.type                        'ESRF BEAMLINE BM14' 
_diffrn_source.pdbx_synchrotron_site       ESRF 
_diffrn_source.pdbx_synchrotron_beamline   BM14 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_wavelength_list        1.0000 
# 
_reflns.entry_id                     1XJ9 
_reflns.observed_criterion_sigma_F   0.0 
_reflns.observed_criterion_sigma_I   0.0 
_reflns.d_resolution_high            2.6 
_reflns.d_resolution_low             30.0 
_reflns.number_all                   1839 
_reflns.number_obs                   1839 
_reflns.percent_possible_obs         98.6 
_reflns.pdbx_Rmerge_I_obs            0.045 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        22.4 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              3.0 
_reflns.R_free_details               ? 
_reflns.pdbx_chi_squared             ? 
_reflns.pdbx_scaling_rejects         ? 
_reflns.pdbx_ordinal                 1 
_reflns.pdbx_diffrn_id               1 
# 
_reflns_shell.d_res_high             2.60 
_reflns_shell.d_res_low              2.69 
_reflns_shell.percent_possible_all   95.6 
_reflns_shell.Rmerge_I_obs           0.183 
_reflns_shell.pdbx_Rsym_value        ? 
_reflns_shell.meanI_over_sigI_obs    5.3 
_reflns_shell.pdbx_redundancy        ? 
_reflns_shell.percent_possible_obs   ? 
_reflns_shell.number_unique_all      172 
_reflns_shell.number_measured_all    ? 
_reflns_shell.number_measured_obs    ? 
_reflns_shell.number_unique_obs      ? 
_reflns_shell.pdbx_chi_squared       ? 
_reflns_shell.pdbx_ordinal           1 
_reflns_shell.pdbx_diffrn_id         1 
# 
_refine.entry_id                                 1XJ9 
_refine.ls_d_res_high                            2.6 
_refine.ls_d_res_low                             27.0 
_refine.pdbx_ls_sigma_F                          3.0 
_refine.pdbx_ls_sigma_I                          ? 
_refine.ls_number_reflns_all                     1839 
_refine.ls_number_reflns_obs                     1517 
_refine.ls_number_reflns_R_free                  141 
_refine.ls_percent_reflns_obs                    78.2 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_obs                          ? 
_refine.ls_R_factor_R_work                       0.255 
_refine.ls_R_factor_R_free                       0.277 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.ls_percent_reflns_R_free                 ? 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.pdbx_method_to_determine_struct          
;crystal 1: single wavelength protocol.
crystal 2: MAD protocol with data collected on 5-bromo-uracil derivative crystal
at 0.9177, 0.9185, 0.9110, 0.9218 A.
the condition for crystal 2 was as follows.
collection data: 05-NOV-2000, temperature(kelvin): 110, PH: 4.80, the details of the source of radiation: synchrotron, EMBL/DESY, HAMBURG beamline BW7A
;
_refine.pdbx_starting_model                      ? 
_refine.pdbx_ls_cross_valid_method               THROUGHOUT 
_refine.pdbx_R_Free_selection_details            random 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_stereochemistry_target_values       'Engh & Huber' 
_refine.solvent_model_details                    ? 
_refine.solvent_model_param_bsol                 ? 
_refine.solvent_model_param_ksol                 ? 
_refine.occupancy_max                            ? 
_refine.occupancy_min                            ? 
_refine.pdbx_isotropic_thermal_model             Isotropic 
_refine.B_iso_mean                               42.5 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.details                                  'Own parameter and topology files created' 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.overall_SU_R_free                        ? 
_refine.overall_SU_B                             ? 
_refine.overall_SU_ML                            ? 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_wR_factor_R_work                      ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.overall_FOM_work_R_set                   ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_analyze.entry_id                        1XJ9 
_refine_analyze.Luzzati_coordinate_error_obs    0.36 
_refine_analyze.Luzzati_sigma_a_obs             0.34 
_refine_analyze.Luzzati_d_res_low_obs           5 
_refine_analyze.Luzzati_coordinate_error_free   0.42 
_refine_analyze.Luzzati_sigma_a_free            0.42 
_refine_analyze.Luzzati_d_res_low_free          ? 
_refine_analyze.number_disordered_residues      ? 
_refine_analyze.occupancy_sum_non_hydrogen      ? 
_refine_analyze.occupancy_sum_hydrogen          ? 
_refine_analyze.pdbx_refine_id                  'X-RAY DIFFRACTION' 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        312 
_refine_hist.pdbx_number_atoms_nucleic_acid   0 
_refine_hist.pdbx_number_atoms_ligand         0 
_refine_hist.number_atoms_solvent             33 
_refine_hist.number_atoms_total               345 
_refine_hist.d_res_high                       2.6 
_refine_hist.d_res_low                        27.0 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
c_angle_deg 1.3   ? ? ? 'X-RAY DIFFRACTION' ? 
c_bond_d    0.009 ? ? ? 'X-RAY DIFFRACTION' ? 
# 
_refine_ls_shell.pdbx_total_number_of_bins_used   ? 
_refine_ls_shell.d_res_high                       2.60 
_refine_ls_shell.d_res_low                        2.86 
_refine_ls_shell.number_reflns_R_work             ? 
_refine_ls_shell.R_factor_R_work                  0.344 
_refine_ls_shell.percent_reflns_obs               70.9 
_refine_ls_shell.R_factor_R_free                  0.401 
_refine_ls_shell.R_factor_R_free_error            0.092 
_refine_ls_shell.percent_reflns_R_free            ? 
_refine_ls_shell.number_reflns_R_free             22 
_refine_ls_shell.redundancy_reflns_obs            ? 
_refine_ls_shell.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_ls_shell.number_reflns_all                ? 
_refine_ls_shell.R_factor_all                     ? 
# 
_struct.entry_id                  1XJ9 
_struct.title                     
'Crystal structure of a partly self-complementary peptide nucleic acid (PNA) oligomer showing a duplex-triplex network' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        1XJ9 
_struct_keywords.pdbx_keywords   'PEPTIDE NUCLEIC ACID' 
_struct_keywords.text            
'PNA, peptide nucleic acid, partly self-complementary, duplex-triplex complex, right-handed, left-handed' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 2 ? 
D N N 2 ? 
# 
loop_
_struct_biol.id 
_struct_biol.details 
_struct_biol.pdbx_parent_biol_id 
1 
;THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT                 
WHICH CONSISTS OF 2 CHAINS.   
A right-handed duplex (from chain A) is generated with the symmetry operation: -x+2, y, -z+1.
;
? 
2 'A left-handed duplex (from chain B) is generated with the symmetry operation: -x+1, y, -z' ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
covale1  covale both ? A APN 3  C  A ? ? 1_555 A GPN 4  N  A ? A APN 103 A GPN 104 1_555 ? ? ? ? ? ? ?            1.336 ? ? 
covale2  covale both ? A APN 3  C  B ? ? 1_555 A GPN 4  N  B ? A APN 103 A GPN 104 1_555 ? ? ? ? ? ? ?            1.332 ? ? 
covale3  covale both ? A GPN 4  C  ? ? ? 1_555 A APN 5  N  ? ? A GPN 104 A APN 105 1_555 ? ? ? ? ? ? ?            1.325 ? ? 
covale4  covale both ? A APN 5  C  ? ? ? 1_555 A TPN 6  N  ? ? A APN 105 A TPN 106 1_555 ? ? ? ? ? ? ?            1.329 ? ? 
covale5  covale both ? A TPN 6  C  ? ? ? 1_555 A CPN 7  N  ? ? A TPN 106 A CPN 107 1_555 ? ? ? ? ? ? ?            1.337 ? ? 
covale6  covale both ? A CPN 7  C  A ? ? 1_555 A APN 8  N  A ? A CPN 107 A APN 108 1_555 ? ? ? ? ? ? ?            1.324 ? ? 
covale7  covale both ? A CPN 7  C  B ? ? 1_555 A APN 8  N  B ? A CPN 107 A APN 108 1_555 ? ? ? ? ? ? ?            1.328 ? ? 
covale8  covale both ? A APN 8  C  A ? ? 1_555 A CPN 9  N  A ? A APN 108 A CPN 109 1_555 ? ? ? ? ? ? ?            1.333 ? ? 
covale9  covale both ? A APN 8  C  B ? ? 1_555 A CPN 9  N  B ? A APN 108 A CPN 109 1_555 ? ? ? ? ? ? ?            1.311 ? ? 
covale10 covale both ? A CPN 9  C  ? ? ? 1_555 A TPN 10 N  ? ? A CPN 109 A TPN 110 1_555 ? ? ? ? ? ? ?            1.333 ? ? 
covale11 covale both ? A TPN 10 C  ? ? ? 1_555 A LYS 11 N  ? ? A TPN 110 A LYS 111 1_555 ? ? ? ? ? ? ?            1.329 ? ? 
covale12 covale both ? B APN 3  C  A ? ? 1_555 B GPN 4  N  A ? B APN 203 B GPN 204 1_555 ? ? ? ? ? ? ?            1.339 ? ? 
covale13 covale both ? B APN 3  C  B ? ? 1_555 B GPN 4  N  B ? B APN 203 B GPN 204 1_555 ? ? ? ? ? ? ?            1.334 ? ? 
covale14 covale both ? B GPN 4  C  ? ? ? 1_555 B APN 5  N  ? ? B GPN 204 B APN 205 1_555 ? ? ? ? ? ? ?            1.335 ? ? 
covale15 covale both ? B APN 5  C  ? ? ? 1_555 B TPN 6  N  ? ? B APN 205 B TPN 206 1_555 ? ? ? ? ? ? ?            1.339 ? ? 
covale16 covale both ? B TPN 6  C  ? ? ? 1_555 B CPN 7  N  ? ? B TPN 206 B CPN 207 1_555 ? ? ? ? ? ? ?            1.316 ? ? 
covale17 covale both ? B CPN 7  C  A ? ? 1_555 B APN 8  N  A ? B CPN 207 B APN 208 1_555 ? ? ? ? ? ? ?            1.325 ? ? 
covale18 covale both ? B CPN 7  C  B ? ? 1_555 B APN 8  N  B ? B CPN 207 B APN 208 1_555 ? ? ? ? ? ? ?            1.297 ? ? 
covale19 covale both ? B APN 8  C  A ? ? 1_555 B CPN 9  N  A ? B APN 208 B CPN 209 1_555 ? ? ? ? ? ? ?            1.316 ? ? 
covale20 covale both ? B APN 8  C  B ? ? 1_555 B CPN 9  N  B ? B APN 208 B CPN 209 1_555 ? ? ? ? ? ? ?            1.307 ? ? 
covale21 covale both ? B CPN 9  C  ? ? ? 1_555 B TPN 10 N  ? ? B CPN 209 B TPN 210 1_555 ? ? ? ? ? ? ?            1.336 ? ? 
covale22 covale both ? B TPN 10 C  ? ? ? 1_555 B LYS 11 N  ? ? B TPN 210 B LYS 211 1_555 ? ? ? ? ? ? ?            1.328 ? ? 
hydrog1  hydrog ?    ? A GPN 4  N1 ? ? ? 1_555 A CPN 7  N3 ? ? A GPN 104 A CPN 107 2_756 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog2  hydrog ?    ? A GPN 4  N2 ? ? ? 1_555 A CPN 7  O2 ? ? A GPN 104 A CPN 107 2_756 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ?    ? A GPN 4  O6 ? ? ? 1_555 A CPN 7  N4 ? ? A GPN 104 A CPN 107 2_756 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ?    ? A APN 5  N1 ? ? ? 1_555 A TPN 6  N3 ? ? A APN 105 A TPN 106 2_756 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ?    ? A APN 5  N6 ? ? ? 1_555 A TPN 6  O4 ? ? A APN 105 A TPN 106 2_756 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ?    ? A TPN 6  N3 ? ? ? 1_555 A APN 5  N1 ? ? A TPN 106 A APN 105 2_756 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ?    ? A TPN 6  O4 ? ? ? 1_555 A APN 5  N6 ? ? A TPN 106 A APN 105 2_756 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ?    ? A CPN 7  N3 ? ? ? 1_555 A GPN 4  N1 ? ? A CPN 107 A GPN 104 2_756 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ?    ? A CPN 7  N4 ? ? ? 1_555 A GPN 4  O6 ? ? A CPN 107 A GPN 104 2_756 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ?    ? A CPN 7  O2 ? ? ? 1_555 A GPN 4  N2 ? ? A CPN 107 A GPN 104 2_756 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
covale ? ? 
hydrog ? ? 
# 
_database_PDB_matrix.entry_id          1XJ9 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_atom_sites.entry_id                    1XJ9 
_atom_sites.fract_transf_matrix[1][1]   0.017986 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.009443 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.023866 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.037523 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C 
N 
O 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  GPN 1  101 ?   ?   ?   A . n 
A 1 2  TPN 2  102 ?   ?   ?   A . n 
A 1 3  APN 3  103 103 APN APN A . n 
A 1 4  GPN 4  104 104 GPN GPN A . n 
A 1 5  APN 5  105 105 APN APN A . n 
A 1 6  TPN 6  106 106 TPN TPN A . n 
A 1 7  CPN 7  107 107 CPN CPN A . n 
A 1 8  APN 8  108 108 APN APN A . n 
A 1 9  CPN 9  109 109 CPN CPN A . n 
A 1 10 TPN 10 110 110 TPN TPN A . n 
A 1 11 LYS 11 111 111 LYS LYS A . n 
B 1 1  GPN 1  201 ?   ?   ?   B . n 
B 1 2  TPN 2  202 ?   ?   ?   B . n 
B 1 3  APN 3  203 203 APN APN B . n 
B 1 4  GPN 4  204 204 GPN GPN B . n 
B 1 5  APN 5  205 205 APN APN B . n 
B 1 6  TPN 6  206 206 TPN TPN B . n 
B 1 7  CPN 7  207 207 CPN CPN B . n 
B 1 8  APN 8  208 208 APN APN B . n 
B 1 9  CPN 9  209 209 CPN CPN B . n 
B 1 10 TPN 10 210 210 TPN TPN B . n 
B 1 11 LYS 11 211 211 LYS LYS B . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
C 2 HOH 1  1  1  HOH HOH A . 
C 2 HOH 2  4  4  HOH HOH A . 
C 2 HOH 3  6  6  HOH HOH A . 
C 2 HOH 4  8  8  HOH HOH A . 
C 2 HOH 5  9  9  HOH HOH A . 
C 2 HOH 6  11 11 HOH HOH A . 
C 2 HOH 7  12 12 HOH HOH A . 
C 2 HOH 8  13 13 HOH HOH A . 
C 2 HOH 9  14 14 HOH HOH A . 
C 2 HOH 10 16 16 HOH HOH A . 
C 2 HOH 11 17 17 HOH HOH A . 
C 2 HOH 12 20 20 HOH HOH A . 
C 2 HOH 13 22 22 HOH HOH A . 
C 2 HOH 14 24 24 HOH HOH A . 
C 2 HOH 15 25 25 HOH HOH A . 
C 2 HOH 16 30 30 HOH HOH A . 
C 2 HOH 17 31 31 HOH HOH A . 
C 2 HOH 18 32 32 HOH HOH A . 
C 2 HOH 19 33 33 HOH HOH A . 
D 2 HOH 1  2  2  HOH HOH B . 
D 2 HOH 2  3  3  HOH HOH B . 
D 2 HOH 3  5  5  HOH HOH B . 
D 2 HOH 4  7  7  HOH HOH B . 
D 2 HOH 5  10 10 HOH HOH B . 
D 2 HOH 6  15 15 HOH HOH B . 
D 2 HOH 7  18 18 HOH HOH B . 
D 2 HOH 8  19 19 HOH HOH B . 
D 2 HOH 9  21 21 HOH HOH B . 
D 2 HOH 10 23 23 HOH HOH B . 
D 2 HOH 11 26 26 HOH HOH B . 
D 2 HOH 12 27 27 HOH HOH B . 
D 2 HOH 13 28 28 HOH HOH B . 
D 2 HOH 14 29 29 HOH HOH B . 
# 
loop_
_pdbx_struct_mod_residue.id 
_pdbx_struct_mod_residue.label_asym_id 
_pdbx_struct_mod_residue.label_comp_id 
_pdbx_struct_mod_residue.label_seq_id 
_pdbx_struct_mod_residue.auth_asym_id 
_pdbx_struct_mod_residue.auth_comp_id 
_pdbx_struct_mod_residue.auth_seq_id 
_pdbx_struct_mod_residue.PDB_ins_code 
_pdbx_struct_mod_residue.parent_comp_id 
_pdbx_struct_mod_residue.details 
1  A APN 3  A APN 103 ? DA ? 
2  A GPN 4  A GPN 104 ? DG ? 
3  A APN 5  A APN 105 ? DA ? 
4  A TPN 6  A TPN 106 ? DT ? 
5  A CPN 7  A CPN 107 ? DC ? 
6  A APN 8  A APN 108 ? DA ? 
7  A CPN 9  A CPN 109 ? DC ? 
8  A TPN 10 A TPN 110 ? DT ? 
9  B APN 3  B APN 203 ? DA ? 
10 B GPN 4  B GPN 204 ? DG ? 
11 B APN 5  B APN 205 ? DA ? 
12 B TPN 6  B TPN 206 ? DT ? 
13 B CPN 7  B CPN 207 ? DC ? 
14 B APN 8  B APN 208 ? DA ? 
15 B CPN 9  B CPN 209 ? DC ? 
16 B TPN 10 B TPN 210 ? DT ? 
# 
loop_
_pdbx_struct_assembly.id 
_pdbx_struct_assembly.details 
_pdbx_struct_assembly.method_details 
_pdbx_struct_assembly.oligomeric_details 
_pdbx_struct_assembly.oligomeric_count 
1 author_defined_assembly ? dimeric 2 
2 author_defined_assembly ? dimeric 2 
# 
loop_
_pdbx_struct_assembly_gen.assembly_id 
_pdbx_struct_assembly_gen.oper_expression 
_pdbx_struct_assembly_gen.asym_id_list 
1 1,2 A,C 
2 1,3 B,D 
# 
loop_
_pdbx_struct_oper_list.id 
_pdbx_struct_oper_list.type 
_pdbx_struct_oper_list.name 
_pdbx_struct_oper_list.symmetry_operation 
_pdbx_struct_oper_list.matrix[1][1] 
_pdbx_struct_oper_list.matrix[1][2] 
_pdbx_struct_oper_list.matrix[1][3] 
_pdbx_struct_oper_list.vector[1] 
_pdbx_struct_oper_list.matrix[2][1] 
_pdbx_struct_oper_list.matrix[2][2] 
_pdbx_struct_oper_list.matrix[2][3] 
_pdbx_struct_oper_list.vector[2] 
_pdbx_struct_oper_list.matrix[3][1] 
_pdbx_struct_oper_list.matrix[3][2] 
_pdbx_struct_oper_list.matrix[3][3] 
_pdbx_struct_oper_list.vector[3] 
1 'identity operation'         1_555 x,y,z       1.0000000000  0.0000000000 0.0000000000 0.0000000000  0.0000000000 1.0000000000 
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000  0.0000000000  
2 'crystal symmetry operation' 2_756 -x+2,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 97.2082544237 0.0000000000 1.0000000000 
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 26.6503481352 
3 'crystal symmetry operation' 2_655 -x+1,y,-z   -1.0000000000 0.0000000000 0.0000000000 55.6000000000 0.0000000000 1.0000000000 
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000  
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2005-02-22 
2 'Structure model' 1 1 2008-04-30 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 2 0 2023-11-15 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Non-polymer description'   
3 3 'Structure model' 'Version format compliance' 
4 4 'Structure model' Advisory                    
5 4 'Structure model' 'Atomic model'              
6 4 'Structure model' 'Data collection'           
7 4 'Structure model' 'Database references'       
8 4 'Structure model' 'Derived calculations'      
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' atom_site                    
2 4 'Structure model' chem_comp_atom               
3 4 'Structure model' chem_comp_bond               
4 4 'Structure model' database_2                   
5 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 
6 4 'Structure model' struct_conn                  
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 4 'Structure model' '_atom_site.auth_atom_id'             
2 4 'Structure model' '_atom_site.label_atom_id'            
3 4 'Structure model' '_database_2.pdbx_DOI'                
4 4 'Structure model' '_database_2.pdbx_database_accession' 
5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 
6 4 'Structure model' '_struct_conn.ptnr1_label_atom_id'    
7 4 'Structure model' '_struct_conn.ptnr2_label_atom_id'    
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
DENZO     'data reduction' . ? 1 
SCALEPACK 'data scaling'   . ? 2 
SOLVE     phasing          . ? 3 
CNS       refinement       . ? 4 
# 
loop_
_pdbx_unobs_or_zero_occ_residues.id 
_pdbx_unobs_or_zero_occ_residues.PDB_model_num 
_pdbx_unobs_or_zero_occ_residues.polymer_flag 
_pdbx_unobs_or_zero_occ_residues.occupancy_flag 
_pdbx_unobs_or_zero_occ_residues.auth_asym_id 
_pdbx_unobs_or_zero_occ_residues.auth_comp_id 
_pdbx_unobs_or_zero_occ_residues.auth_seq_id 
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code 
_pdbx_unobs_or_zero_occ_residues.label_asym_id 
_pdbx_unobs_or_zero_occ_residues.label_comp_id 
_pdbx_unobs_or_zero_occ_residues.label_seq_id 
1 1 Y 1 A GPN 101 ? A GPN 1 
2 1 Y 1 A TPN 102 ? A TPN 2 
3 1 Y 1 B GPN 201 ? B GPN 1 
4 1 Y 1 B TPN 202 ? B TPN 2 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
APN "C8'"  C N N 1   
APN "C7'"  C N N 2   
APN "O7'"  O N N 3   
APN "C5'"  C N N 4   
APN C      C N N 5   
APN O      O N N 6   
APN OXT    O N N 7   
APN "N4'"  N N N 8   
APN "C3'"  C N N 9   
APN "C2'"  C N N 10  
APN N      N N N 11  
APN N9     N Y N 12  
APN C8     C Y N 13  
APN N7     N Y N 14  
APN C5     C Y N 15  
APN C6     C Y N 16  
APN N6     N N N 17  
APN N1     N Y N 18  
APN C2     C Y N 19  
APN N3     N Y N 20  
APN C4     C Y N 21  
APN "H8'1" H N N 22  
APN "H8'2" H N N 23  
APN "H5'1" H N N 24  
APN "H5'2" H N N 25  
APN HXT    H N N 26  
APN "H3'1" H N N 27  
APN "H3'2" H N N 28  
APN "H2'1" H N N 29  
APN "H2'2" H N N 30  
APN H      H N N 31  
APN H2     H N N 32  
APN H3     H N N 33  
APN H8     H N N 34  
APN HN61   H N N 35  
APN HN62   H N N 36  
APN H21    H N N 37  
CPN "C8'"  C N N 38  
CPN "C7'"  C N N 39  
CPN "O7'"  O N N 40  
CPN "C5'"  C N N 41  
CPN C      C N N 42  
CPN O      O N N 43  
CPN OXT    O N N 44  
CPN "N4'"  N N N 45  
CPN "C3'"  C N N 46  
CPN "C2'"  C N N 47  
CPN N      N N N 48  
CPN N1     N N N 49  
CPN C2     C N N 50  
CPN N3     N N N 51  
CPN C4     C N N 52  
CPN C5     C N N 53  
CPN C6     C N N 54  
CPN O2     O N N 55  
CPN N4     N N N 56  
CPN "H8'1" H N N 57  
CPN "H8'2" H N N 58  
CPN "H5'1" H N N 59  
CPN "H5'2" H N N 60  
CPN HXT    H N N 61  
CPN "H3'1" H N N 62  
CPN "H3'2" H N N 63  
CPN "H2'1" H N N 64  
CPN "H2'2" H N N 65  
CPN H      H N N 66  
CPN H2     H N N 67  
CPN H3     H N N 68  
CPN H5     H N N 69  
CPN H6     H N N 70  
CPN HN41   H N N 71  
CPN HN42   H N N 72  
GPN "C8'"  C N N 73  
GPN "C7'"  C N N 74  
GPN "O7'"  O N N 75  
GPN "C5'"  C N N 76  
GPN C      C N N 77  
GPN O      O N N 78  
GPN OXT    O N N 79  
GPN "N4'"  N N N 80  
GPN "C3'"  C N N 81  
GPN "C2'"  C N N 82  
GPN N      N N N 83  
GPN N9     N Y N 84  
GPN C8     C Y N 85  
GPN N7     N Y N 86  
GPN C5     C Y N 87  
GPN C6     C N N 88  
GPN O6     O N N 89  
GPN N1     N N N 90  
GPN C2     C N N 91  
GPN N2     N N N 92  
GPN N3     N N N 93  
GPN C4     C Y N 94  
GPN "H8'1" H N N 95  
GPN "H8'2" H N N 96  
GPN "H5'1" H N N 97  
GPN "H5'2" H N N 98  
GPN HXT    H N N 99  
GPN "H3'1" H N N 100 
GPN "H3'2" H N N 101 
GPN "H2'1" H N N 102 
GPN "H2'2" H N N 103 
GPN H      H N N 104 
GPN H2     H N N 105 
GPN H3     H N N 106 
GPN H8     H N N 107 
GPN HN1    H N N 108 
GPN HN21   H N N 109 
GPN HN22   H N N 110 
HOH O      O N N 111 
HOH H1     H N N 112 
HOH H2     H N N 113 
LYS N      N N N 114 
LYS CA     C N S 115 
LYS C      C N N 116 
LYS O      O N N 117 
LYS CB     C N N 118 
LYS CG     C N N 119 
LYS CD     C N N 120 
LYS CE     C N N 121 
LYS NZ     N N N 122 
LYS OXT    O N N 123 
LYS H      H N N 124 
LYS H2     H N N 125 
LYS HA     H N N 126 
LYS HB2    H N N 127 
LYS HB3    H N N 128 
LYS HG2    H N N 129 
LYS HG3    H N N 130 
LYS HD2    H N N 131 
LYS HD3    H N N 132 
LYS HE2    H N N 133 
LYS HE3    H N N 134 
LYS HZ1    H N N 135 
LYS HZ2    H N N 136 
LYS HZ3    H N N 137 
LYS HXT    H N N 138 
TPN "C8'"  C N N 139 
TPN "C7'"  C N N 140 
TPN "O7'"  O N N 141 
TPN "C5'"  C N N 142 
TPN C      C N N 143 
TPN O      O N N 144 
TPN OXT    O N N 145 
TPN "N4'"  N N N 146 
TPN "C3'"  C N N 147 
TPN "C2'"  C N N 148 
TPN N      N N N 149 
TPN N1     N N N 150 
TPN C6     C N N 151 
TPN C2     C N N 152 
TPN O2     O N N 153 
TPN N3     N N N 154 
TPN C4     C N N 155 
TPN O4     O N N 156 
TPN C5     C N N 157 
TPN C5M    C N N 158 
TPN "H8'1" H N N 159 
TPN "H8'2" H N N 160 
TPN "H5'1" H N N 161 
TPN "H5'2" H N N 162 
TPN HXT    H N N 163 
TPN "H3'1" H N N 164 
TPN "H3'2" H N N 165 
TPN "H2'1" H N N 166 
TPN "H2'2" H N N 167 
TPN H      H N N 168 
TPN H2     H N N 169 
TPN H3     H N N 170 
TPN H6     H N N 171 
TPN HN3    H N N 172 
TPN HM51   H N N 173 
TPN HM52   H N N 174 
TPN HM53   H N N 175 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
APN "C8'" "C7'"  sing N N 1   
APN "C8'" N9     sing N N 2   
APN "C8'" "H8'1" sing N N 3   
APN "C8'" "H8'2" sing N N 4   
APN "C7'" "O7'"  doub N N 5   
APN "C7'" "N4'"  sing N N 6   
APN "C5'" C      sing N N 7   
APN "C5'" "N4'"  sing N N 8   
APN "C5'" "H5'1" sing N N 9   
APN "C5'" "H5'2" sing N N 10  
APN C     O      doub N N 11  
APN C     OXT    sing N N 12  
APN OXT   HXT    sing N N 13  
APN "N4'" "C3'"  sing N N 14  
APN "C3'" "C2'"  sing N N 15  
APN "C3'" "H3'1" sing N N 16  
APN "C3'" "H3'2" sing N N 17  
APN "C2'" N      sing N N 18  
APN "C2'" "H2'1" sing N N 19  
APN "C2'" "H2'2" sing N N 20  
APN N     H      sing N N 21  
APN N     H2     sing N N 22  
APN N     H3     sing N N 23  
APN N9    C8     sing Y N 24  
APN N9    C4     sing Y N 25  
APN C8    N7     doub Y N 26  
APN C8    H8     sing N N 27  
APN N7    C5     sing Y N 28  
APN C5    C6     sing Y N 29  
APN C5    C4     doub Y N 30  
APN C6    N6     sing N N 31  
APN C6    N1     doub Y N 32  
APN N6    HN61   sing N N 33  
APN N6    HN62   sing N N 34  
APN N1    C2     sing Y N 35  
APN C2    N3     doub Y N 36  
APN C2    H21    sing N N 37  
APN N3    C4     sing Y N 38  
CPN "C8'" "C7'"  sing N N 39  
CPN "C8'" N1     sing N N 40  
CPN "C8'" "H8'1" sing N N 41  
CPN "C8'" "H8'2" sing N N 42  
CPN "C7'" "O7'"  doub N N 43  
CPN "C7'" "N4'"  sing N N 44  
CPN "C5'" C      sing N N 45  
CPN "C5'" "N4'"  sing N N 46  
CPN "C5'" "H5'1" sing N N 47  
CPN "C5'" "H5'2" sing N N 48  
CPN C     O      doub N N 49  
CPN C     OXT    sing N N 50  
CPN OXT   HXT    sing N N 51  
CPN "N4'" "C3'"  sing N N 52  
CPN "C3'" "C2'"  sing N N 53  
CPN "C3'" "H3'1" sing N N 54  
CPN "C3'" "H3'2" sing N N 55  
CPN "C2'" N      sing N N 56  
CPN "C2'" "H2'1" sing N N 57  
CPN "C2'" "H2'2" sing N N 58  
CPN N     H      sing N N 59  
CPN N     H2     sing N N 60  
CPN N     H3     sing N N 61  
CPN N1    C2     sing N N 62  
CPN N1    C6     sing N N 63  
CPN C2    N3     sing N N 64  
CPN C2    O2     doub N N 65  
CPN N3    C4     doub N N 66  
CPN C4    C5     sing N N 67  
CPN C4    N4     sing N N 68  
CPN C5    C6     doub N N 69  
CPN C5    H5     sing N N 70  
CPN C6    H6     sing N N 71  
CPN N4    HN41   sing N N 72  
CPN N4    HN42   sing N N 73  
GPN "C8'" "C7'"  sing N N 74  
GPN "C8'" N9     sing N N 75  
GPN "C8'" "H8'1" sing N N 76  
GPN "C8'" "H8'2" sing N N 77  
GPN "C7'" "O7'"  doub N N 78  
GPN "C7'" "N4'"  sing N N 79  
GPN "C5'" C      sing N N 80  
GPN "C5'" "N4'"  sing N N 81  
GPN "C5'" "H5'1" sing N N 82  
GPN "C5'" "H5'2" sing N N 83  
GPN C     O      doub N N 84  
GPN C     OXT    sing N N 85  
GPN OXT   HXT    sing N N 86  
GPN "N4'" "C3'"  sing N N 87  
GPN "C3'" "C2'"  sing N N 88  
GPN "C3'" "H3'1" sing N N 89  
GPN "C3'" "H3'2" sing N N 90  
GPN "C2'" N      sing N N 91  
GPN "C2'" "H2'1" sing N N 92  
GPN "C2'" "H2'2" sing N N 93  
GPN N     H      sing N N 94  
GPN N     H2     sing N N 95  
GPN N     H3     sing N N 96  
GPN N9    C8     sing Y N 97  
GPN N9    C4     sing Y N 98  
GPN C8    N7     doub Y N 99  
GPN C8    H8     sing N N 100 
GPN N7    C5     sing Y N 101 
GPN C5    C6     sing N N 102 
GPN C5    C4     doub Y N 103 
GPN C6    O6     doub N N 104 
GPN C6    N1     sing N N 105 
GPN N1    C2     sing N N 106 
GPN N1    HN1    sing N N 107 
GPN C2    N2     sing N N 108 
GPN C2    N3     doub N N 109 
GPN N2    HN21   sing N N 110 
GPN N2    HN22   sing N N 111 
GPN N3    C4     sing N N 112 
HOH O     H1     sing N N 113 
HOH O     H2     sing N N 114 
LYS N     CA     sing N N 115 
LYS N     H      sing N N 116 
LYS N     H2     sing N N 117 
LYS CA    C      sing N N 118 
LYS CA    CB     sing N N 119 
LYS CA    HA     sing N N 120 
LYS C     O      doub N N 121 
LYS C     OXT    sing N N 122 
LYS CB    CG     sing N N 123 
LYS CB    HB2    sing N N 124 
LYS CB    HB3    sing N N 125 
LYS CG    CD     sing N N 126 
LYS CG    HG2    sing N N 127 
LYS CG    HG3    sing N N 128 
LYS CD    CE     sing N N 129 
LYS CD    HD2    sing N N 130 
LYS CD    HD3    sing N N 131 
LYS CE    NZ     sing N N 132 
LYS CE    HE2    sing N N 133 
LYS CE    HE3    sing N N 134 
LYS NZ    HZ1    sing N N 135 
LYS NZ    HZ2    sing N N 136 
LYS NZ    HZ3    sing N N 137 
LYS OXT   HXT    sing N N 138 
TPN "C8'" "C7'"  sing N N 139 
TPN "C8'" N1     sing N N 140 
TPN "C8'" "H8'1" sing N N 141 
TPN "C8'" "H8'2" sing N N 142 
TPN "C7'" "O7'"  doub N N 143 
TPN "C7'" "N4'"  sing N N 144 
TPN "C5'" C      sing N N 145 
TPN "C5'" "N4'"  sing N N 146 
TPN "C5'" "H5'1" sing N N 147 
TPN "C5'" "H5'2" sing N N 148 
TPN C     O      doub N N 149 
TPN C     OXT    sing N N 150 
TPN OXT   HXT    sing N N 151 
TPN "N4'" "C3'"  sing N N 152 
TPN "C3'" "C2'"  sing N N 153 
TPN "C3'" "H3'1" sing N N 154 
TPN "C3'" "H3'2" sing N N 155 
TPN "C2'" N      sing N N 156 
TPN "C2'" "H2'1" sing N N 157 
TPN "C2'" "H2'2" sing N N 158 
TPN N     H      sing N N 159 
TPN N     H2     sing N N 160 
TPN N     H3     sing N N 161 
TPN N1    C6     sing N N 162 
TPN N1    C2     sing N N 163 
TPN C6    C5     doub N N 164 
TPN C6    H6     sing N N 165 
TPN C2    O2     doub N N 166 
TPN C2    N3     sing N N 167 
TPN N3    C4     sing N N 168 
TPN N3    HN3    sing N N 169 
TPN C4    O4     doub N N 170 
TPN C4    C5     sing N N 171 
TPN C5    C5M    sing N N 172 
TPN C5M   HM51   sing N N 173 
TPN C5M   HM52   sing N N 174 
TPN C5M   HM53   sing N N 175 
# 
_ndb_struct_conf_na.entry_id   1XJ9 
_ndb_struct_conf_na.feature    'double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A GPN 4 1_555 A CPN 7 2_756 -0.460 -0.253 -0.154 4.142  -0.290 -7.427 1 A_GPN104:CPN107_A A 104 ? A 107 ? 19 1 
1 A APN 5 1_555 A TPN 6 2_756 0.140  -0.277 -0.287 2.628  -4.308 1.249  2 A_APN105:TPN106_A A 105 ? A 106 ? 20 1 
1 A TPN 6 1_555 A APN 5 2_756 -0.140 -0.277 -0.287 -2.628 -4.308 1.249  3 A_TPN106:APN105_A A 106 ? A 105 ? 20 1 
1 A CPN 7 1_555 A GPN 4 2_756 0.460  -0.253 -0.154 -4.142 -0.290 -7.427 4 A_CPN107:GPN104_A A 107 ? A 104 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A GPN 4 1_555 A CPN 7 2_756 A APN 5 1_555 A TPN 6 2_756 0.303  -2.710 3.383 0.126  1.592  22.204 -7.621 -0.737 3.185 4.127   
-0.328 22.261 1 AA_GPN104APN105:TPN106CPN107_AA A 104 ? A 107 ? A 105 ? A 106 ? 
1 A APN 5 1_555 A TPN 6 2_756 A TPN 6 1_555 A APN 5 2_756 0.000  -2.925 3.515 0.000  -4.562 15.349 -6.496 0.000  4.200 -16.607 
0.000  16.009 2 AA_APN105TPN106:APN105TPN106_AA A 105 ? A 106 ? A 106 ? A 105 ? 
1 A TPN 6 1_555 A APN 5 2_756 A CPN 7 1_555 A GPN 4 2_756 -0.303 -2.710 3.383 -0.126 1.592  22.204 -7.621 0.737  3.185 4.127   
0.328  22.261 3 AA_TPN106CPN107:GPN104APN105_AA A 106 ? A 105 ? A 107 ? A 104 ? 
# 
_pdbx_entity_nonpoly.entity_id   2 
_pdbx_entity_nonpoly.name        water 
_pdbx_entity_nonpoly.comp_id     HOH 
#