HEADER UNKNOWN FUNCTION 29-SEP-04 1XKQ TITLE CRYSTAL STRUCTURE OF SHORT-CHAIN DEHYDROGENASE/REDUCTASE OF UNKNOWN TITLE 2 FUNCTION FROM CAENORHABDITIS ELEGANS WITH COFACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT-CHAIN REDUCTASE FAMILY MEMBER (5D234); COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: HYPOTHETICAL PROTEIN R05D8.7; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: SEE REMARK 400 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: R05D8.7; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS PARRALLEL BETA-SHEET OF SEVEN STRANDS IN THE ORDER 3214567; THREE KEYWDS 2 ALPHA-HELICES ON EITHER SIDE OF BETA-SHEET; SEVENTH ALPHA-HELIX ON KEYWDS 3 TOP OF BETA-SHEET, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 4 INITIATIVE, SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS, SECSG, KEYWDS 5 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR N.SCHORMANN,J.ZHOU,E.KARPOVA,Y.ZHANG,J.SYMERSKY,B.BUNZEL,W.-Y.HUANG, AUTHOR 2 A.ARABSHAHI,S.QIU,C.-H.LUAN,R.GRAY,M.CARSON,J.TSAO,M.LUO,D.JOHNSON, AUTHOR 3 S.LU,G.LIN,D.LUO,Z.CAO,S.LI,A.MCKINSTRY,Q.SHANG,Y.-J.CHEN,T.BRAY, AUTHOR 4 L.NAGY,L.DELUCAS,SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS AUTHOR 5 (SECSG) REVDAT 4 23-AUG-23 1XKQ 1 REMARK REVDAT 3 24-FEB-09 1XKQ 1 VERSN REVDAT 2 01-FEB-05 1XKQ 1 AUTHOR KEYWDS REMARK REVDAT 1 12-OCT-04 1XKQ 0 JRNL AUTH N.SCHORMANN,J.ZHOU,E.KARPOVA,Y.ZHANG,J.SYMERSKY,B.BUNZEL, JRNL AUTH 2 W.-Y.HUANG,A.ARABSHAHI,S.QIU,C.-H.LUAN,R.GRAY,M.CARSON, JRNL AUTH 3 J.TSAO,M.LUO,D.JOHNSON,S.LU,G.LIN,D.LUO,Z.CAO,S.LI, JRNL AUTH 4 A.MCKINSTRY,Q.SHANG,Y.-J.CHEN,T.BRAY,L.NAGY,L.DELUCAS JRNL TITL CRYSTAL STRUCTURE OF SHORT-CHAIN DEHYDROGENASE/REDUCTASE OF JRNL TITL 2 UNKNOWN FUNCTION FROM CAENORHABDITIS ELEGANS WITH COFACTOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2755339.920 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 86844 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4365 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 13455 REMARK 3 BIN R VALUE (WORKING SET) : 0.2030 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 768 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.009 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8135 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 192 REMARK 3 SOLVENT ATOMS : 628 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.67000 REMARK 3 B22 (A**2) : -2.67000 REMARK 3 B33 (A**2) : 5.33000 REMARK 3 B12 (A**2) : -0.75000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : -0.0 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.08 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.480 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.200 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.780 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.060 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.860 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 63.36 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NDP.PAR REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NDP.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SEE REMARK 999 REMARK 4 REMARK 4 1XKQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1000030465. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9746 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87709 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.06700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.17800 REMARK 200 R SYM FOR SHELL (I) : 0.17800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: THE SEARCH MODEL WAS A MODEL GENERATED BY THE REMARK 200 SWISS-MODEL SERVER BASED ON PDB ENTRIES 1SPX AND 1RWB. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M NH4F, PH 6.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.40667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 128.81333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 96.61000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 161.01667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.20333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS THE BIOLOGICAL ASSEMBLY WHICH REMARK 300 IS A TETRAMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -134.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 274 REMARK 465 SER A 275 REMARK 465 ILE A 276 REMARK 465 MET A 277 REMARK 465 SER A 278 REMARK 465 SER A 279 REMARK 465 HIS A 280 REMARK 465 MET B 1 REMARK 465 VAL B 273 REMARK 465 MET B 274 REMARK 465 SER B 275 REMARK 465 ILE B 276 REMARK 465 MET B 277 REMARK 465 SER B 278 REMARK 465 SER B 279 REMARK 465 HIS B 280 REMARK 465 MET C 1 REMARK 465 VAL C 273 REMARK 465 MET C 274 REMARK 465 SER C 275 REMARK 465 ILE C 276 REMARK 465 MET C 277 REMARK 465 SER C 278 REMARK 465 SER C 279 REMARK 465 HIS C 280 REMARK 465 MET D 1 REMARK 465 VAL D 273 REMARK 465 MET D 274 REMARK 465 SER D 275 REMARK 465 ILE D 276 REMARK 465 MET D 277 REMARK 465 SER D 278 REMARK 465 SER D 279 REMARK 465 HIS D 280 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 52 21.52 -69.52 REMARK 500 LEU A 122 -62.15 -130.58 REMARK 500 SER A 147 -132.59 -99.09 REMARK 500 PHE A 159 76.98 -117.58 REMARK 500 THR A 197 -151.20 -148.66 REMARK 500 CYS A 223 -60.16 -95.82 REMARK 500 PHE A 249 -61.74 -20.46 REMARK 500 LYS B 52 -6.43 -59.70 REMARK 500 LEU B 122 -62.59 -129.70 REMARK 500 SER B 147 -132.42 -104.80 REMARK 500 PRO B 157 5.48 -68.92 REMARK 500 PHE B 159 72.38 -114.44 REMARK 500 THR B 197 -150.48 -145.84 REMARK 500 PHE B 249 -60.94 -23.86 REMARK 500 LEU C 122 -59.28 -125.02 REMARK 500 SER C 147 -134.75 -99.35 REMARK 500 PHE C 159 75.42 -102.60 REMARK 500 THR C 197 -149.62 -144.10 REMARK 500 PHE C 249 -63.02 -26.79 REMARK 500 SER D 53 -150.69 -78.34 REMARK 500 LEU D 122 -59.84 -124.07 REMARK 500 SER D 147 -133.38 -100.34 REMARK 500 ASP D 158 -62.35 -98.99 REMARK 500 PHE D 159 72.87 -107.09 REMARK 500 THR D 197 -148.32 -145.50 REMARK 500 PHE D 249 -60.50 -25.19 REMARK 500 HIS D 271 -75.23 -129.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 1281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP B 2281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP C 3281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP D 4281 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XHL RELATED DB: PDB REMARK 900 A C. ELEGANS PROTEIN (PUTATIVE TROPINONE REDUCTASE II) FROM THE REMARK 900 SAME FAMILY (SDR FAMILY) REMARK 900 RELATED ID: 1SPX RELATED DB: PDB REMARK 900 A C. ELEGANS PROTEIN (PUTATIVE GLUCOSE DEHYDROGENASE) FROM THE SAME REMARK 900 FAMILY (SDR FAMILY) REMARK 900 RELATED ID: 1OOE RELATED DB: PDB REMARK 900 A C. ELEGANS PROTEIN (DIHYDROPTERIDINE REDUCTASE) FROM THE SAME REMARK 900 FAMILY (SDR FAMILY) REMARK 900 RELATED ID: R05D8.7 RELATED DB: TARGETDB DBREF 1XKQ A 1 280 UNP Q9N5G4 Q9N5G4_CAEEL 1 280 DBREF 1XKQ B 1 280 UNP Q9N5G4 Q9N5G4_CAEEL 1 280 DBREF 1XKQ C 1 280 UNP Q9N5G4 Q9N5G4_CAEEL 1 280 DBREF 1XKQ D 1 280 UNP Q9N5G4 Q9N5G4_CAEEL 1 280 SEQRES 1 A 280 MET PRO ARG PHE SER ASN LYS THR VAL ILE ILE THR GLY SEQRES 2 A 280 SER SER ASN GLY ILE GLY ARG THR THR ALA ILE LEU PHE SEQRES 3 A 280 ALA GLN GLU GLY ALA ASN VAL THR ILE THR GLY ARG SER SEQRES 4 A 280 SER GLU ARG LEU GLU GLU THR ARG GLN ILE ILE LEU LYS SEQRES 5 A 280 SER GLY VAL SER GLU LYS GLN VAL ASN SER VAL VAL ALA SEQRES 6 A 280 ASP VAL THR THR GLU ASP GLY GLN ASP GLN ILE ILE ASN SEQRES 7 A 280 SER THR LEU LYS GLN PHE GLY LYS ILE ASP VAL LEU VAL SEQRES 8 A 280 ASN ASN ALA GLY ALA ALA ILE PRO ASP ALA PHE GLY THR SEQRES 9 A 280 THR GLY THR ASP GLN GLY ILE ASP ILE TYR HIS LYS THR SEQRES 10 A 280 LEU LYS LEU ASN LEU GLN ALA VAL ILE GLU MET THR LYS SEQRES 11 A 280 LYS VAL LYS PRO HIS LEU VAL ALA SER LYS GLY GLU ILE SEQRES 12 A 280 VAL ASN VAL SER SER ILE VAL ALA GLY PRO GLN ALA GLN SEQRES 13 A 280 PRO ASP PHE LEU TYR TYR ALA ILE ALA LYS ALA ALA LEU SEQRES 14 A 280 ASP GLN TYR THR ARG SER THR ALA ILE ASP LEU ALA LYS SEQRES 15 A 280 PHE GLY ILE ARG VAL ASN SER VAL SER PRO GLY MET VAL SEQRES 16 A 280 GLU THR GLY PHE THR ASN ALA MET GLY MET PRO ASP GLN SEQRES 17 A 280 ALA SER GLN LYS PHE TYR ASN PHE MET ALA SER HIS LYS SEQRES 18 A 280 GLU CYS ILE PRO ILE GLY ALA ALA GLY LYS PRO GLU HIS SEQRES 19 A 280 ILE ALA ASN ILE ILE LEU PHE LEU ALA ASP ARG ASN LEU SEQRES 20 A 280 SER PHE TYR ILE LEU GLY GLN SER ILE VAL ALA ASP GLY SEQRES 21 A 280 GLY THR SER LEU VAL MET GLY THR GLN ALA HIS ASP VAL SEQRES 22 A 280 MET SER ILE MET SER SER HIS SEQRES 1 B 280 MET PRO ARG PHE SER ASN LYS THR VAL ILE ILE THR GLY SEQRES 2 B 280 SER SER ASN GLY ILE GLY ARG THR THR ALA ILE LEU PHE SEQRES 3 B 280 ALA GLN GLU GLY ALA ASN VAL THR ILE THR GLY ARG SER SEQRES 4 B 280 SER GLU ARG LEU GLU GLU THR ARG GLN ILE ILE LEU LYS SEQRES 5 B 280 SER GLY VAL SER GLU LYS GLN VAL ASN SER VAL VAL ALA SEQRES 6 B 280 ASP VAL THR THR GLU ASP GLY GLN ASP GLN ILE ILE ASN SEQRES 7 B 280 SER THR LEU LYS GLN PHE GLY LYS ILE ASP VAL LEU VAL SEQRES 8 B 280 ASN ASN ALA GLY ALA ALA ILE PRO ASP ALA PHE GLY THR SEQRES 9 B 280 THR GLY THR ASP GLN GLY ILE ASP ILE TYR HIS LYS THR SEQRES 10 B 280 LEU LYS LEU ASN LEU GLN ALA VAL ILE GLU MET THR LYS SEQRES 11 B 280 LYS VAL LYS PRO HIS LEU VAL ALA SER LYS GLY GLU ILE SEQRES 12 B 280 VAL ASN VAL SER SER ILE VAL ALA GLY PRO GLN ALA GLN SEQRES 13 B 280 PRO ASP PHE LEU TYR TYR ALA ILE ALA LYS ALA ALA LEU SEQRES 14 B 280 ASP GLN TYR THR ARG SER THR ALA ILE ASP LEU ALA LYS SEQRES 15 B 280 PHE GLY ILE ARG VAL ASN SER VAL SER PRO GLY MET VAL SEQRES 16 B 280 GLU THR GLY PHE THR ASN ALA MET GLY MET PRO ASP GLN SEQRES 17 B 280 ALA SER GLN LYS PHE TYR ASN PHE MET ALA SER HIS LYS SEQRES 18 B 280 GLU CYS ILE PRO ILE GLY ALA ALA GLY LYS PRO GLU HIS SEQRES 19 B 280 ILE ALA ASN ILE ILE LEU PHE LEU ALA ASP ARG ASN LEU SEQRES 20 B 280 SER PHE TYR ILE LEU GLY GLN SER ILE VAL ALA ASP GLY SEQRES 21 B 280 GLY THR SER LEU VAL MET GLY THR GLN ALA HIS ASP VAL SEQRES 22 B 280 MET SER ILE MET SER SER HIS SEQRES 1 C 280 MET PRO ARG PHE SER ASN LYS THR VAL ILE ILE THR GLY SEQRES 2 C 280 SER SER ASN GLY ILE GLY ARG THR THR ALA ILE LEU PHE SEQRES 3 C 280 ALA GLN GLU GLY ALA ASN VAL THR ILE THR GLY ARG SER SEQRES 4 C 280 SER GLU ARG LEU GLU GLU THR ARG GLN ILE ILE LEU LYS SEQRES 5 C 280 SER GLY VAL SER GLU LYS GLN VAL ASN SER VAL VAL ALA SEQRES 6 C 280 ASP VAL THR THR GLU ASP GLY GLN ASP GLN ILE ILE ASN SEQRES 7 C 280 SER THR LEU LYS GLN PHE GLY LYS ILE ASP VAL LEU VAL SEQRES 8 C 280 ASN ASN ALA GLY ALA ALA ILE PRO ASP ALA PHE GLY THR SEQRES 9 C 280 THR GLY THR ASP GLN GLY ILE ASP ILE TYR HIS LYS THR SEQRES 10 C 280 LEU LYS LEU ASN LEU GLN ALA VAL ILE GLU MET THR LYS SEQRES 11 C 280 LYS VAL LYS PRO HIS LEU VAL ALA SER LYS GLY GLU ILE SEQRES 12 C 280 VAL ASN VAL SER SER ILE VAL ALA GLY PRO GLN ALA GLN SEQRES 13 C 280 PRO ASP PHE LEU TYR TYR ALA ILE ALA LYS ALA ALA LEU SEQRES 14 C 280 ASP GLN TYR THR ARG SER THR ALA ILE ASP LEU ALA LYS SEQRES 15 C 280 PHE GLY ILE ARG VAL ASN SER VAL SER PRO GLY MET VAL SEQRES 16 C 280 GLU THR GLY PHE THR ASN ALA MET GLY MET PRO ASP GLN SEQRES 17 C 280 ALA SER GLN LYS PHE TYR ASN PHE MET ALA SER HIS LYS SEQRES 18 C 280 GLU CYS ILE PRO ILE GLY ALA ALA GLY LYS PRO GLU HIS SEQRES 19 C 280 ILE ALA ASN ILE ILE LEU PHE LEU ALA ASP ARG ASN LEU SEQRES 20 C 280 SER PHE TYR ILE LEU GLY GLN SER ILE VAL ALA ASP GLY SEQRES 21 C 280 GLY THR SER LEU VAL MET GLY THR GLN ALA HIS ASP VAL SEQRES 22 C 280 MET SER ILE MET SER SER HIS SEQRES 1 D 280 MET PRO ARG PHE SER ASN LYS THR VAL ILE ILE THR GLY SEQRES 2 D 280 SER SER ASN GLY ILE GLY ARG THR THR ALA ILE LEU PHE SEQRES 3 D 280 ALA GLN GLU GLY ALA ASN VAL THR ILE THR GLY ARG SER SEQRES 4 D 280 SER GLU ARG LEU GLU GLU THR ARG GLN ILE ILE LEU LYS SEQRES 5 D 280 SER GLY VAL SER GLU LYS GLN VAL ASN SER VAL VAL ALA SEQRES 6 D 280 ASP VAL THR THR GLU ASP GLY GLN ASP GLN ILE ILE ASN SEQRES 7 D 280 SER THR LEU LYS GLN PHE GLY LYS ILE ASP VAL LEU VAL SEQRES 8 D 280 ASN ASN ALA GLY ALA ALA ILE PRO ASP ALA PHE GLY THR SEQRES 9 D 280 THR GLY THR ASP GLN GLY ILE ASP ILE TYR HIS LYS THR SEQRES 10 D 280 LEU LYS LEU ASN LEU GLN ALA VAL ILE GLU MET THR LYS SEQRES 11 D 280 LYS VAL LYS PRO HIS LEU VAL ALA SER LYS GLY GLU ILE SEQRES 12 D 280 VAL ASN VAL SER SER ILE VAL ALA GLY PRO GLN ALA GLN SEQRES 13 D 280 PRO ASP PHE LEU TYR TYR ALA ILE ALA LYS ALA ALA LEU SEQRES 14 D 280 ASP GLN TYR THR ARG SER THR ALA ILE ASP LEU ALA LYS SEQRES 15 D 280 PHE GLY ILE ARG VAL ASN SER VAL SER PRO GLY MET VAL SEQRES 16 D 280 GLU THR GLY PHE THR ASN ALA MET GLY MET PRO ASP GLN SEQRES 17 D 280 ALA SER GLN LYS PHE TYR ASN PHE MET ALA SER HIS LYS SEQRES 18 D 280 GLU CYS ILE PRO ILE GLY ALA ALA GLY LYS PRO GLU HIS SEQRES 19 D 280 ILE ALA ASN ILE ILE LEU PHE LEU ALA ASP ARG ASN LEU SEQRES 20 D 280 SER PHE TYR ILE LEU GLY GLN SER ILE VAL ALA ASP GLY SEQRES 21 D 280 GLY THR SER LEU VAL MET GLY THR GLN ALA HIS ASP VAL SEQRES 22 D 280 MET SER ILE MET SER SER HIS HET NDP A1281 48 HET NDP B2281 48 HET NDP C3281 48 HET NDP D4281 48 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE FORMUL 5 NDP 4(C21 H30 N7 O17 P3) FORMUL 9 HOH *628(H2 O) HELIX 1 1 ASN A 16 GLU A 29 1 14 HELIX 2 2 SER A 39 LYS A 52 1 14 HELIX 3 3 SER A 56 LYS A 58 5 3 HELIX 4 4 THR A 69 GLY A 85 1 17 HELIX 5 5 THR A 105 GLN A 109 5 5 HELIX 6 6 GLY A 110 LEU A 122 1 13 HELIX 7 7 LEU A 122 LYS A 140 1 19 HELIX 8 8 SER A 148 GLY A 152 5 5 HELIX 9 9 PHE A 159 LYS A 182 1 24 HELIX 10 10 GLY A 198 MET A 203 1 6 HELIX 11 11 PRO A 206 HIS A 220 1 15 HELIX 12 12 LYS A 231 ASP A 244 1 14 HELIX 13 13 ASP A 244 PHE A 249 1 6 HELIX 14 14 GLY A 261 VAL A 265 5 5 HELIX 15 15 MET A 266 HIS A 271 5 6 HELIX 16 16 ASN B 16 GLU B 29 1 14 HELIX 17 17 SER B 39 LYS B 52 1 14 HELIX 18 18 SER B 56 LYS B 58 5 3 HELIX 19 19 THR B 69 GLY B 85 1 17 HELIX 20 20 THR B 105 GLN B 109 5 5 HELIX 21 21 GLY B 110 LEU B 122 1 13 HELIX 22 22 LEU B 122 LYS B 140 1 19 HELIX 23 23 SER B 148 GLY B 152 5 5 HELIX 24 24 PHE B 159 ALA B 181 1 23 HELIX 25 25 LYS B 182 GLY B 184 5 3 HELIX 26 26 GLY B 198 MET B 203 1 6 HELIX 27 27 PRO B 206 HIS B 220 1 15 HELIX 28 28 LYS B 231 ASP B 244 1 14 HELIX 29 29 ASP B 244 PHE B 249 1 6 HELIX 30 30 GLY B 261 VAL B 265 5 5 HELIX 31 31 MET B 266 HIS B 271 5 6 HELIX 32 32 ASN C 16 GLU C 29 1 14 HELIX 33 33 SER C 39 LYS C 52 1 14 HELIX 34 34 SER C 56 LYS C 58 5 3 HELIX 35 35 THR C 69 GLY C 85 1 17 HELIX 36 36 THR C 105 GLN C 109 5 5 HELIX 37 37 GLY C 110 LEU C 122 1 13 HELIX 38 38 LEU C 122 LYS C 140 1 19 HELIX 39 39 SER C 148 GLY C 152 5 5 HELIX 40 40 PHE C 159 ALA C 181 1 23 HELIX 41 41 LYS C 182 GLY C 184 5 3 HELIX 42 42 GLY C 198 GLY C 204 1 7 HELIX 43 43 PRO C 206 HIS C 220 1 15 HELIX 44 44 LYS C 231 ASP C 244 1 14 HELIX 45 45 ASP C 244 PHE C 249 1 6 HELIX 46 46 GLY C 261 VAL C 265 5 5 HELIX 47 47 MET C 266 HIS C 271 5 6 HELIX 48 48 ASN D 16 GLU D 29 1 14 HELIX 49 49 SER D 39 SER D 53 1 15 HELIX 50 50 SER D 56 LYS D 58 5 3 HELIX 51 51 THR D 69 GLY D 85 1 17 HELIX 52 52 THR D 105 GLN D 109 5 5 HELIX 53 53 GLY D 110 LEU D 122 1 13 HELIX 54 54 LEU D 122 LYS D 140 1 19 HELIX 55 55 SER D 148 GLY D 152 5 5 HELIX 56 56 PHE D 159 LYS D 182 1 24 HELIX 57 57 GLY D 198 MET D 203 1 6 HELIX 58 58 PRO D 206 HIS D 220 1 15 HELIX 59 59 LYS D 231 ASP D 244 1 14 HELIX 60 60 ASP D 244 PHE D 249 1 6 HELIX 61 61 GLY D 261 VAL D 265 5 5 HELIX 62 62 MET D 266 HIS D 271 5 6 SHEET 1 A 7 VAL A 60 VAL A 64 0 SHEET 2 A 7 ASN A 32 GLY A 37 1 N VAL A 33 O ASN A 61 SHEET 3 A 7 THR A 8 ILE A 11 1 N VAL A 9 O ASN A 32 SHEET 4 A 7 VAL A 89 ASN A 92 1 O VAL A 91 N ILE A 10 SHEET 5 A 7 GLU A 142 VAL A 146 1 O VAL A 144 N LEU A 90 SHEET 6 A 7 ARG A 186 PRO A 192 1 O ARG A 186 N ILE A 143 SHEET 7 A 7 SER A 255 ALA A 258 1 O ILE A 256 N SER A 191 SHEET 1 B 7 VAL B 60 VAL B 64 0 SHEET 2 B 7 ASN B 32 GLY B 37 1 N VAL B 33 O ASN B 61 SHEET 3 B 7 THR B 8 ILE B 11 1 N VAL B 9 O ASN B 32 SHEET 4 B 7 VAL B 89 ASN B 92 1 O VAL B 89 N ILE B 10 SHEET 5 B 7 GLU B 142 VAL B 146 1 O VAL B 144 N LEU B 90 SHEET 6 B 7 ARG B 186 PRO B 192 1 O ASN B 188 N ILE B 143 SHEET 7 B 7 SER B 255 ALA B 258 1 O ILE B 256 N SER B 191 SHEET 1 C 7 VAL C 60 VAL C 64 0 SHEET 2 C 7 ASN C 32 GLY C 37 1 N VAL C 33 O ASN C 61 SHEET 3 C 7 THR C 8 ILE C 11 1 N VAL C 9 O ASN C 32 SHEET 4 C 7 VAL C 89 ASN C 92 1 O VAL C 91 N ILE C 10 SHEET 5 C 7 GLU C 142 VAL C 146 1 O GLU C 142 N LEU C 90 SHEET 6 C 7 ARG C 186 PRO C 192 1 O ASN C 188 N ILE C 143 SHEET 7 C 7 SER C 255 ALA C 258 1 O ILE C 256 N SER C 191 SHEET 1 D 7 VAL D 60 VAL D 64 0 SHEET 2 D 7 ASN D 32 GLY D 37 1 N VAL D 33 O ASN D 61 SHEET 3 D 7 THR D 8 ILE D 11 1 N VAL D 9 O ASN D 32 SHEET 4 D 7 VAL D 89 ASN D 92 1 O VAL D 91 N ILE D 10 SHEET 5 D 7 GLU D 142 VAL D 146 1 O VAL D 144 N LEU D 90 SHEET 6 D 7 ARG D 186 PRO D 192 1 O ASN D 188 N ILE D 143 SHEET 7 D 7 SER D 255 ALA D 258 1 O ILE D 256 N SER D 191 CISPEP 1 GLY A 152 PRO A 153 0 0.30 CISPEP 2 GLY B 152 PRO B 153 0 0.46 CISPEP 3 GLY C 152 PRO C 153 0 0.28 CISPEP 4 GLY D 152 PRO D 153 0 0.35 SITE 1 AC1 37 GLY A 13 SER A 14 SER A 15 ASN A 16 SITE 2 AC1 37 GLY A 17 ILE A 18 GLY A 37 ARG A 38 SITE 3 AC1 37 SER A 39 ARG A 42 ALA A 65 ASP A 66 SITE 4 AC1 37 VAL A 67 THR A 68 ASN A 93 ALA A 94 SITE 5 AC1 37 GLY A 95 LEU A 120 VAL A 146 SER A 147 SITE 6 AC1 37 SER A 148 TYR A 162 LYS A 166 PRO A 192 SITE 7 AC1 37 GLY A 193 MET A 194 VAL A 195 THR A 197 SITE 8 AC1 37 GLY A 198 PHE A 199 HOH A1284 HOH A1285 SITE 9 AC1 37 HOH A1306 HOH A1315 HOH A1335 HOH A1348 SITE 10 AC1 37 HOH A1377 SITE 1 AC2 33 GLY B 13 SER B 14 SER B 15 ASN B 16 SITE 2 AC2 33 GLY B 17 ILE B 18 GLY B 37 ARG B 38 SITE 3 AC2 33 SER B 39 ARG B 42 ALA B 65 ASP B 66 SITE 4 AC2 33 VAL B 67 ASN B 93 ALA B 94 GLY B 95 SITE 5 AC2 33 LEU B 120 SER B 147 SER B 148 TYR B 162 SITE 6 AC2 33 LYS B 166 PRO B 192 GLY B 193 MET B 194 SITE 7 AC2 33 VAL B 195 THR B 197 GLY B 198 PHE B 199 SITE 8 AC2 33 HOH B2298 HOH B2311 HOH B2352 HOH B2367 SITE 9 AC2 33 HOH B2405 SITE 1 AC3 34 GLY C 13 SER C 14 SER C 15 ASN C 16 SITE 2 AC3 34 GLY C 17 ILE C 18 GLY C 37 ARG C 38 SITE 3 AC3 34 SER C 39 ARG C 42 ALA C 65 ASP C 66 SITE 4 AC3 34 VAL C 67 ASN C 93 ALA C 94 GLY C 95 SITE 5 AC3 34 LEU C 120 SER C 147 SER C 148 TYR C 162 SITE 6 AC3 34 LYS C 166 PRO C 192 GLY C 193 MET C 194 SITE 7 AC3 34 VAL C 195 THR C 197 GLY C 198 PHE C 199 SITE 8 AC3 34 HOH C3302 HOH C3313 HOH C3317 HOH C3319 SITE 9 AC3 34 HOH C3349 HOH C3357 SITE 1 AC4 36 GLY D 13 SER D 14 SER D 15 ASN D 16 SITE 2 AC4 36 GLY D 17 ILE D 18 GLY D 37 ARG D 38 SITE 3 AC4 36 SER D 39 ARG D 42 ALA D 65 ASP D 66 SITE 4 AC4 36 VAL D 67 THR D 68 ASN D 93 ALA D 94 SITE 5 AC4 36 GLY D 95 LEU D 120 SER D 147 SER D 148 SITE 6 AC4 36 TYR D 162 LYS D 166 PRO D 192 GLY D 193 SITE 7 AC4 36 MET D 194 VAL D 195 THR D 197 GLY D 198 SITE 8 AC4 36 PHE D 199 HOH D4286 HOH D4287 HOH D4304 SITE 9 AC4 36 HOH D4310 HOH D4327 HOH D4335 HOH D4382 CRYST1 119.690 119.690 193.220 90.00 90.00 120.00 P 61 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008355 0.004824 0.000000 0.00000 SCALE2 0.000000 0.009647 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005175 0.00000