HEADER TRANSFERASE 01-OCT-04 1XMC TITLE C323M MUTANT STRUCTURE OF MOUSE CARNITINE OCTANOYLTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOMAL CARNITINE O-OCTANOYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: COT; COMPND 5 EC: 2.3.1.137; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CROT, COT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS CARNITINE, OCTANOYLTRANSFERASE, HEPES, MPD, MUTANT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.JOGL,Y.S.HSIAO,L.TONG REVDAT 5 14-FEB-24 1XMC 1 REMARK REVDAT 4 20-OCT-21 1XMC 1 REMARK SEQADV REVDAT 3 24-FEB-09 1XMC 1 VERSN REVDAT 2 11-JAN-05 1XMC 1 JRNL REVDAT 1 19-OCT-04 1XMC 0 JRNL AUTH G.JOGL,Y.S.HSIAO,L.TONG JRNL TITL CRYSTAL STRUCTURE OF MOUSE CARNITINE OCTANOYLTRANSFERASE AND JRNL TITL 2 MOLECULAR DETERMINANTS OF SUBSTRATE SELECTIVITY. JRNL REF J.BIOL.CHEM. V. 280 738 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15492013 JRNL DOI 10.1074/JBC.M409894200 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 337446.550 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.2 REMARK 3 NUMBER OF REFLECTIONS : 97083 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.500 REMARK 3 FREE R VALUE TEST SET COUNT : 7313 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 14071 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1156 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.007 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9623 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 555 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.80000 REMARK 3 B22 (A**2) : 1.80000 REMARK 3 B33 (A**2) : -3.60000 REMARK 3 B12 (A**2) : 2.25000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.13 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.18 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.750 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 50.46 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : HEP.PAR REMARK 3 PARAMETER FILE 4 : MPD.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : HEP.TOP REMARK 3 TOPOLOGY FILE 4 : MPD.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1XMC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1000030510. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 99340 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: COMO REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES, 62%V/V MPD, PH 7.4, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 81.95000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 47.31385 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.07667 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 81.95000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 47.31385 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.07667 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 81.95000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 47.31385 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.07667 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 94.62771 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 106.15333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 94.62771 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 106.15333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 94.62771 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 106.15333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ASN A 3 REMARK 465 GLN A 4 REMARK 465 LEU A 5 REMARK 465 THR A 6 REMARK 465 LYS A 7 REMARK 465 SER A 8 REMARK 465 VAL A 9 REMARK 465 GLU A 10 REMARK 465 SER A 403 REMARK 465 PHE A 404 REMARK 465 GLY A 405 REMARK 465 LYS A 406 REMARK 465 LYS A 407 REMARK 465 LEU A 408 REMARK 465 THR A 409 REMARK 465 LYS A 410 REMARK 465 GLU A 411 REMARK 465 GLU A 412 REMARK 465 ALA A 413 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 ASN B 3 REMARK 465 GLN B 4 REMARK 465 LEU B 5 REMARK 465 THR B 6 REMARK 465 LYS B 7 REMARK 465 SER B 8 REMARK 465 VAL B 9 REMARK 465 GLU B 10 REMARK 465 HIS B 611 REMARK 465 LEU B 612 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY B 564 N - CA - C ANGL. DEV. = -15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 90 -65.88 -131.99 REMARK 500 PRO A 108 35.94 -69.78 REMARK 500 HIS A 112 -103.41 -138.47 REMARK 500 PRO A 189 150.87 -49.67 REMARK 500 ARG A 197 60.72 38.24 REMARK 500 ASP A 259 114.47 -168.03 REMARK 500 TYR A 290 23.41 -154.35 REMARK 500 ASP A 373 -158.99 -113.68 REMARK 500 ARG A 451 -85.03 -113.48 REMARK 500 SER A 544 148.20 -176.42 REMARK 500 TYR B 90 -65.76 -132.21 REMARK 500 VAL B 101 -39.09 -130.37 REMARK 500 PRO B 108 41.22 -70.77 REMARK 500 HIS B 112 -102.48 -139.38 REMARK 500 ARG B 197 59.13 38.27 REMARK 500 ASP B 259 115.16 -171.58 REMARK 500 TYR B 290 21.40 -145.76 REMARK 500 LYS B 407 39.27 -70.84 REMARK 500 LEU B 408 -41.90 -150.97 REMARK 500 ARG B 451 -79.60 -113.34 REMARK 500 SER B 544 146.31 -172.51 REMARK 500 ASN B 561 30.81 -93.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 613 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 614 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 707 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XL7 RELATED DB: PDB REMARK 900 STRUCTURE OF MOUSE CARNITINE OCTANOYLTRANSFERASE REMARK 900 RELATED ID: 1XL8 RELATED DB: PDB REMARK 900 STRUCTURE OF MOUSE CARNITINE OCTANOYLTRANSFERASE IN COMPLEX WITH REMARK 900 OCTANOYLCARNITINE REMARK 900 RELATED ID: 1XMD RELATED DB: PDB REMARK 900 M335V MUTANT STRUCTURE OF MOUSE CARNITINE OCTANOYLTRANSFERASE DBREF 1XMC A 1 612 UNP Q9DC50 OCTC_MOUSE 1 612 DBREF 1XMC B 1 612 UNP Q9DC50 OCTC_MOUSE 1 612 SEQADV 1XMC MET A 323 UNP Q9DC50 CYS 323 ENGINEERED MUTATION SEQADV 1XMC MET B 323 UNP Q9DC50 CYS 323 ENGINEERED MUTATION SEQRES 1 A 612 MET GLU ASN GLN LEU THR LYS SER VAL GLU GLU ARG THR SEQRES 2 A 612 PHE GLN TYR GLN ASP SER LEU PRO SER LEU PRO VAL PRO SEQRES 3 A 612 ALA LEU GLU GLU SER LEU LYS LYS TYR LEU GLU SER VAL SEQRES 4 A 612 LYS PRO PHE ALA ASN GLU ASP GLU TYR LYS LYS THR GLU SEQRES 5 A 612 GLU ILE VAL GLN LYS PHE GLN GLU GLY ALA GLY LYS ARG SEQRES 6 A 612 LEU HIS GLN LYS LEU LEU GLU ARG ALA ARG GLY LYS ARG SEQRES 7 A 612 ASN TRP LEU GLU GLU TRP TRP LEU ASN VAL ALA TYR LEU SEQRES 8 A 612 ASP VAL ARG ILE PRO SER GLN LEU ASN VAL ASN PHE VAL SEQRES 9 A 612 GLY PRO CYS PRO HIS PHE GLU HIS TYR TRP PRO ALA ARG SEQRES 10 A 612 GLU GLY THR GLN LEU GLU ARG GLY SER MET MET LEU TRP SEQRES 11 A 612 HIS ASN LEU ASN TYR TRP GLN LEU LEU ARG ARG GLU LYS SEQRES 12 A 612 LEU PRO VAL HIS LYS SER GLY ASN THR PRO LEU ASP MET SEQRES 13 A 612 ASN GLN PHE ARG MET LEU PHE SER THR CYS LYS VAL PRO SEQRES 14 A 612 GLY ILE THR ARG ASP SER ILE MET ASN TYR PHE LYS THR SEQRES 15 A 612 GLU SER GLU GLY HIS CYS PRO THR HIS ILE ALA VAL LEU SEQRES 16 A 612 CYS ARG GLY ARG ALA PHE VAL PHE ASP VAL LEU HIS GLU SEQRES 17 A 612 GLY CYS LEU ILE THR PRO PRO GLU LEU LEU ARG GLN LEU SEQRES 18 A 612 THR TYR ILE HIS LYS LYS CYS SER ASN GLU PRO VAL GLY SEQRES 19 A 612 PRO SER ILE ALA ALA LEU THR SER GLU GLU ARG THR ARG SEQRES 20 A 612 TRP ALA LYS ALA ARG GLU TYR LEU ILE SER LEU ASP PRO SEQRES 21 A 612 GLU ASN LEU THR LEU LEU GLU LYS ILE GLN THR SER LEU SEQRES 22 A 612 PHE VAL TYR SER ILE GLU ASP SER SER PRO HIS ALA THR SEQRES 23 A 612 PRO GLU GLU TYR SER GLN VAL PHE GLU MET LEU LEU GLY SEQRES 24 A 612 GLY ASP PRO SER VAL ARG TRP GLY ASP LYS SER TYR ASN SEQRES 25 A 612 LEU ILE SER PHE ALA ASN GLY ILE PHE GLY MET CYS CYS SEQRES 26 A 612 ASP HIS ALA PRO TYR ASP ALA MET VAL MET VAL ASN ILE SEQRES 27 A 612 ALA HIS TYR VAL ASP GLU ARG VAL LEU GLU THR GLU GLY SEQRES 28 A 612 ARG TRP LYS GLY SER GLU LYS VAL ARG ASP ILE PRO LEU SEQRES 29 A 612 PRO GLU GLU LEU VAL PHE THR VAL ASP GLU LYS ILE LEU SEQRES 30 A 612 ASN ASP VAL SER GLN ALA LYS ALA GLN HIS LEU LYS ALA SEQRES 31 A 612 ALA SER ASP LEU GLN ILE ALA ALA SER THR PHE THR SER SEQRES 32 A 612 PHE GLY LYS LYS LEU THR LYS GLU GLU ALA LEU HIS PRO SEQRES 33 A 612 ASP THR PHE ILE GLN LEU ALA LEU GLN LEU ALA TYR TYR SEQRES 34 A 612 ARG LEU HIS GLY ARG PRO GLY CYS CYS TYR GLU THR ALA SEQRES 35 A 612 MET THR ARG TYR PHE TYR HIS GLY ARG THR GLU THR VAL SEQRES 36 A 612 ARG SER CYS THR VAL GLU ALA VAL ARG TRP CYS GLN SER SEQRES 37 A 612 MET GLN ASP PRO SER ALA SER LEU LEU GLU ARG GLN GLN SEQRES 38 A 612 LYS MET LEU GLU ALA PHE ALA LYS HIS ASN LYS MET MET SEQRES 39 A 612 LYS ASP CYS SER HIS GLY LYS GLY PHE ASP ARG HIS LEU SEQRES 40 A 612 LEU GLY LEU LEU LEU ILE ALA LYS GLU GLU GLY LEU PRO SEQRES 41 A 612 VAL PRO GLU LEU PHE GLU ASP PRO LEU PHE SER ARG SER SEQRES 42 A 612 GLY GLY GLY GLY ASN PHE VAL LEU SER THR SER LEU VAL SEQRES 43 A 612 GLY TYR LEU ARG VAL GLN GLY VAL VAL VAL PRO MET VAL SEQRES 44 A 612 HIS ASN GLY TYR GLY PHE PHE TYR HIS ILE ARG ASP ASP SEQRES 45 A 612 ARG PHE VAL VAL ALA CYS SER SER TRP ARG SER CYS PRO SEQRES 46 A 612 GLU THR ASP ALA GLU LYS LEU VAL GLN MET ILE PHE HIS SEQRES 47 A 612 ALA PHE HIS ASP MET ILE GLN LEU MET ASN THR ALA HIS SEQRES 48 A 612 LEU SEQRES 1 B 612 MET GLU ASN GLN LEU THR LYS SER VAL GLU GLU ARG THR SEQRES 2 B 612 PHE GLN TYR GLN ASP SER LEU PRO SER LEU PRO VAL PRO SEQRES 3 B 612 ALA LEU GLU GLU SER LEU LYS LYS TYR LEU GLU SER VAL SEQRES 4 B 612 LYS PRO PHE ALA ASN GLU ASP GLU TYR LYS LYS THR GLU SEQRES 5 B 612 GLU ILE VAL GLN LYS PHE GLN GLU GLY ALA GLY LYS ARG SEQRES 6 B 612 LEU HIS GLN LYS LEU LEU GLU ARG ALA ARG GLY LYS ARG SEQRES 7 B 612 ASN TRP LEU GLU GLU TRP TRP LEU ASN VAL ALA TYR LEU SEQRES 8 B 612 ASP VAL ARG ILE PRO SER GLN LEU ASN VAL ASN PHE VAL SEQRES 9 B 612 GLY PRO CYS PRO HIS PHE GLU HIS TYR TRP PRO ALA ARG SEQRES 10 B 612 GLU GLY THR GLN LEU GLU ARG GLY SER MET MET LEU TRP SEQRES 11 B 612 HIS ASN LEU ASN TYR TRP GLN LEU LEU ARG ARG GLU LYS SEQRES 12 B 612 LEU PRO VAL HIS LYS SER GLY ASN THR PRO LEU ASP MET SEQRES 13 B 612 ASN GLN PHE ARG MET LEU PHE SER THR CYS LYS VAL PRO SEQRES 14 B 612 GLY ILE THR ARG ASP SER ILE MET ASN TYR PHE LYS THR SEQRES 15 B 612 GLU SER GLU GLY HIS CYS PRO THR HIS ILE ALA VAL LEU SEQRES 16 B 612 CYS ARG GLY ARG ALA PHE VAL PHE ASP VAL LEU HIS GLU SEQRES 17 B 612 GLY CYS LEU ILE THR PRO PRO GLU LEU LEU ARG GLN LEU SEQRES 18 B 612 THR TYR ILE HIS LYS LYS CYS SER ASN GLU PRO VAL GLY SEQRES 19 B 612 PRO SER ILE ALA ALA LEU THR SER GLU GLU ARG THR ARG SEQRES 20 B 612 TRP ALA LYS ALA ARG GLU TYR LEU ILE SER LEU ASP PRO SEQRES 21 B 612 GLU ASN LEU THR LEU LEU GLU LYS ILE GLN THR SER LEU SEQRES 22 B 612 PHE VAL TYR SER ILE GLU ASP SER SER PRO HIS ALA THR SEQRES 23 B 612 PRO GLU GLU TYR SER GLN VAL PHE GLU MET LEU LEU GLY SEQRES 24 B 612 GLY ASP PRO SER VAL ARG TRP GLY ASP LYS SER TYR ASN SEQRES 25 B 612 LEU ILE SER PHE ALA ASN GLY ILE PHE GLY MET CYS CYS SEQRES 26 B 612 ASP HIS ALA PRO TYR ASP ALA MET VAL MET VAL ASN ILE SEQRES 27 B 612 ALA HIS TYR VAL ASP GLU ARG VAL LEU GLU THR GLU GLY SEQRES 28 B 612 ARG TRP LYS GLY SER GLU LYS VAL ARG ASP ILE PRO LEU SEQRES 29 B 612 PRO GLU GLU LEU VAL PHE THR VAL ASP GLU LYS ILE LEU SEQRES 30 B 612 ASN ASP VAL SER GLN ALA LYS ALA GLN HIS LEU LYS ALA SEQRES 31 B 612 ALA SER ASP LEU GLN ILE ALA ALA SER THR PHE THR SER SEQRES 32 B 612 PHE GLY LYS LYS LEU THR LYS GLU GLU ALA LEU HIS PRO SEQRES 33 B 612 ASP THR PHE ILE GLN LEU ALA LEU GLN LEU ALA TYR TYR SEQRES 34 B 612 ARG LEU HIS GLY ARG PRO GLY CYS CYS TYR GLU THR ALA SEQRES 35 B 612 MET THR ARG TYR PHE TYR HIS GLY ARG THR GLU THR VAL SEQRES 36 B 612 ARG SER CYS THR VAL GLU ALA VAL ARG TRP CYS GLN SER SEQRES 37 B 612 MET GLN ASP PRO SER ALA SER LEU LEU GLU ARG GLN GLN SEQRES 38 B 612 LYS MET LEU GLU ALA PHE ALA LYS HIS ASN LYS MET MET SEQRES 39 B 612 LYS ASP CYS SER HIS GLY LYS GLY PHE ASP ARG HIS LEU SEQRES 40 B 612 LEU GLY LEU LEU LEU ILE ALA LYS GLU GLU GLY LEU PRO SEQRES 41 B 612 VAL PRO GLU LEU PHE GLU ASP PRO LEU PHE SER ARG SER SEQRES 42 B 612 GLY GLY GLY GLY ASN PHE VAL LEU SER THR SER LEU VAL SEQRES 43 B 612 GLY TYR LEU ARG VAL GLN GLY VAL VAL VAL PRO MET VAL SEQRES 44 B 612 HIS ASN GLY TYR GLY PHE PHE TYR HIS ILE ARG ASP ASP SEQRES 45 B 612 ARG PHE VAL VAL ALA CYS SER SER TRP ARG SER CYS PRO SEQRES 46 B 612 GLU THR ASP ALA GLU LYS LEU VAL GLN MET ILE PHE HIS SEQRES 47 B 612 ALA PHE HIS ASP MET ILE GLN LEU MET ASN THR ALA HIS SEQRES 48 B 612 LEU HET EPE A 613 15 HET MPD A 614 8 HET EPE B 701 15 HET MPD B 702 8 HET MPD B 703 8 HET MPD B 704 8 HET MPD B 705 8 HET MPD B 706 8 HET MPD B 707 8 HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN EPE HEPES FORMUL 3 EPE 2(C8 H18 N2 O4 S) FORMUL 4 MPD 7(C6 H14 O2) FORMUL 12 HOH *555(H2 O) HELIX 1 1 TYR A 16 LEU A 20 5 5 HELIX 2 2 ALA A 27 LYS A 40 1 14 HELIX 3 3 PRO A 41 ALA A 43 5 3 HELIX 4 4 ASN A 44 GLY A 61 1 18 HELIX 5 5 GLY A 61 LYS A 77 1 17 HELIX 6 6 LEU A 81 TYR A 90 1 10 HELIX 7 7 PRO A 96 VAL A 101 1 6 HELIX 8 8 PRO A 108 HIS A 112 5 5 HELIX 9 9 THR A 120 ARG A 141 1 22 HELIX 10 10 MET A 156 LEU A 162 5 7 HELIX 11 11 THR A 213 ASN A 230 1 18 HELIX 12 12 SER A 236 GLU A 243 5 8 HELIX 13 13 GLU A 244 ASP A 259 1 16 HELIX 14 14 ASP A 259 SER A 272 1 14 HELIX 15 15 TYR A 290 GLY A 299 1 10 HELIX 16 16 ASP A 301 ARG A 305 5 5 HELIX 17 17 ASP A 331 THR A 349 1 19 HELIX 18 18 ASP A 373 SER A 392 1 20 HELIX 19 19 HIS A 415 GLY A 433 1 19 HELIX 20 20 THR A 459 ASP A 471 1 13 HELIX 21 21 SER A 475 HIS A 499 1 25 HELIX 22 22 PHE A 503 GLU A 517 1 15 HELIX 23 23 PRO A 522 ASP A 527 1 6 HELIX 24 24 ASP A 527 SER A 533 1 7 HELIX 25 25 ASP A 588 LEU A 612 1 25 HELIX 26 26 TYR B 16 LEU B 20 5 5 HELIX 27 27 ALA B 27 LYS B 40 1 14 HELIX 28 28 PRO B 41 ALA B 43 5 3 HELIX 29 29 ASN B 44 GLY B 61 1 18 HELIX 30 30 GLY B 61 GLY B 76 1 16 HELIX 31 31 LEU B 81 TYR B 90 1 10 HELIX 32 32 PRO B 96 VAL B 101 1 6 HELIX 33 33 THR B 120 ARG B 141 1 22 HELIX 34 34 MET B 156 LEU B 162 5 7 HELIX 35 35 THR B 213 ASN B 230 1 18 HELIX 36 36 SER B 236 GLU B 243 5 8 HELIX 37 37 GLU B 244 ASP B 259 1 16 HELIX 38 38 PRO B 260 SER B 272 1 13 HELIX 39 39 TYR B 290 GLY B 299 1 10 HELIX 40 40 ASP B 301 ARG B 305 5 5 HELIX 41 41 ASP B 331 THR B 349 1 19 HELIX 42 42 ASP B 373 ASP B 393 1 21 HELIX 43 43 GLY B 405 LYS B 410 1 6 HELIX 44 44 HIS B 415 GLY B 433 1 19 HELIX 45 45 THR B 459 GLN B 470 1 12 HELIX 46 46 SER B 475 HIS B 499 1 25 HELIX 47 47 PHE B 503 GLU B 517 1 15 HELIX 48 48 PRO B 522 ASP B 527 1 6 HELIX 49 49 ASP B 527 SER B 533 1 7 HELIX 50 50 ASP B 588 THR B 609 1 22 SHEET 1 A 7 PHE A 103 PRO A 106 0 SHEET 2 A 7 PHE A 321 CYS A 325 -1 O CYS A 325 N PHE A 103 SHEET 3 A 7 ASN A 312 SER A 315 -1 N ILE A 314 O GLY A 322 SHEET 4 A 7 VAL A 275 ILE A 278 1 N SER A 277 O LEU A 313 SHEET 5 A 7 HIS A 191 CYS A 196 1 N ALA A 193 O TYR A 276 SHEET 6 A 7 ARG A 199 ASP A 204 -1 O PHE A 201 N VAL A 194 SHEET 7 A 7 GLU A 366 LEU A 368 -1 O LEU A 368 N ALA A 200 SHEET 1 B 2 LYS A 148 SER A 149 0 SHEET 2 B 2 THR A 152 PRO A 153 -1 O THR A 152 N SER A 149 SHEET 1 C 2 THR A 165 VAL A 168 0 SHEET 2 C 2 SER A 175 ASN A 178 -1 O MET A 177 N CYS A 166 SHEET 1 D 2 LEU A 206 HIS A 207 0 SHEET 2 D 2 CYS A 210 LEU A 211 -1 O CYS A 210 N HIS A 207 SHEET 1 E 6 LEU A 394 PHE A 401 0 SHEET 2 E 6 ARG A 573 TRP A 581 -1 O PHE A 574 N PHE A 401 SHEET 3 E 6 TYR A 563 ARG A 570 -1 N PHE A 566 O ALA A 577 SHEET 4 E 6 LEU A 541 LEU A 545 1 N SER A 542 O PHE A 565 SHEET 5 E 6 CYS A 438 MET A 443 1 N TYR A 439 O LEU A 541 SHEET 6 E 6 THR A 452 ARG A 456 -1 O VAL A 455 N GLU A 440 SHEET 1 F 7 PHE B 103 PRO B 106 0 SHEET 2 F 7 PHE B 321 CYS B 325 -1 O CYS B 325 N PHE B 103 SHEET 3 F 7 ASN B 312 SER B 315 -1 N ILE B 314 O GLY B 322 SHEET 4 F 7 VAL B 275 ILE B 278 1 N SER B 277 O LEU B 313 SHEET 5 F 7 HIS B 191 CYS B 196 1 N ALA B 193 O TYR B 276 SHEET 6 F 7 ARG B 199 ASP B 204 -1 O PHE B 201 N VAL B 194 SHEET 7 F 7 GLU B 366 LEU B 368 -1 O LEU B 368 N ALA B 200 SHEET 1 G 2 LYS B 148 SER B 149 0 SHEET 2 G 2 THR B 152 PRO B 153 -1 O THR B 152 N SER B 149 SHEET 1 H 2 THR B 165 VAL B 168 0 SHEET 2 H 2 SER B 175 ASN B 178 -1 O MET B 177 N CYS B 166 SHEET 1 I 2 LEU B 206 HIS B 207 0 SHEET 2 I 2 CYS B 210 LEU B 211 -1 O CYS B 210 N HIS B 207 SHEET 1 J 6 LEU B 394 PHE B 401 0 SHEET 2 J 6 PHE B 574 TRP B 581 -1 O CYS B 578 N ALA B 397 SHEET 3 J 6 TYR B 563 ILE B 569 -1 N PHE B 566 O ALA B 577 SHEET 4 J 6 LEU B 541 LEU B 545 1 N SER B 542 O PHE B 565 SHEET 5 J 6 CYS B 438 MET B 443 1 N TYR B 439 O LEU B 541 SHEET 6 J 6 THR B 452 ARG B 456 -1 O GLU B 453 N ALA B 442 SITE 1 AC1 10 TRP A 85 TYR A 90 HIS A 327 TYR A 439 SITE 2 AC1 10 THR A 441 THR A 452 HOH A 616 HOH A 628 SITE 3 AC1 10 HOH A 650 HOH A 678 SITE 1 AC2 14 TRP B 85 TYR B 90 HIS B 327 ASP B 331 SITE 2 AC2 14 TYR B 439 THR B 441 THR B 452 MET B 558 SITE 3 AC2 14 MPD B 702 MPD B 707 HOH B 721 HOH B 873 SITE 4 AC2 14 HOH B 928 HOH B1016 SITE 1 AC3 6 PHE A 103 HIS A 327 ASP A 331 ALA A 332 SITE 2 AC3 6 SER A 544 PHE A 566 SITE 1 AC4 7 PHE B 103 HIS B 327 ALA B 332 THR B 441 SITE 2 AC4 7 PHE B 566 EPE B 701 HOH B 873 SITE 1 AC5 4 HIS B 191 ASP B 204 LYS B 268 GLU B 366 SITE 1 AC6 7 LYS B 33 GLU B 52 GLN B 59 GLU B 366 SITE 2 AC6 7 HOH B 840 HOH B 858 HOH B1038 SITE 1 AC7 5 LEU B 71 ARG B 75 SER B 257 LEU B 258 SITE 2 AC7 5 HOH B 750 SITE 1 AC8 5 TYR B 439 GLY B 537 EPE B 701 HOH B 890 SITE 2 AC8 5 HOH B 928 CRYST1 163.900 163.900 159.230 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006101 0.003523 0.000000 0.00000 SCALE2 0.000000 0.007045 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006280 0.00000