HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 04-OCT-04 1XNE TITLE SOLUTION STRUCTURE OF PYROCOCCUS FURIOSUS PROTEIN PF0470: THE TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET PFR14 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN PF0469; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 186497; SOURCE 4 STRAIN: DSM 3638; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GFT NMR, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, KEYWDS 2 NESG, PFR14, ALPHA AND BETA PROTEIN, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.LIU,R.XIAO,D.PARISH,L.MA,D.SUKUMARAN,T.ACTON,G.T.MONTELIONE, AUTHOR 2 T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 13-JUL-11 1XNE 1 VERSN REVDAT 3 24-FEB-09 1XNE 1 VERSN REVDAT 2 25-JAN-05 1XNE 1 AUTHOR KEYWDS REVDAT 1 14-DEC-04 1XNE 0 JRNL AUTH G.LIU,Y.SHEN,H.S.ATREYA,D.PARISH,Y.SHAO,D.K.SUKUMARAN, JRNL AUTH 2 R.XIAO,A.YEE,A.LEMAK,A.BHATTACHARYA,T.A.ACTON, JRNL AUTH 3 C.H.ARROWSMITH,G.T.MONTELIONE,T.SZYPERSKI JRNL TITL NMR DATA COLLECTION AND ANALYSIS PROTOCOL FOR JRNL TITL 2 HIGH-THROUGHPUT PROTEIN STRUCTURE DETERMINATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 102 10487 2005 JRNL REFN ISSN 0027-8424 JRNL PMID 16027363 JRNL DOI 10.1073/PNAS.0504338102 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5 REMARK 3 AUTHORS : GUENTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1XNE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-OCT-04. REMARK 100 THE RCSB ID CODE IS RCSB030544. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.02 MM, NMR BUFFER 6.5, 5% D2O, REMARK 210 0.02% NAN3, 10MM DTT, 5MM CACL2, REMARK 210 100MM NACL, 20MM MES, PH 6.5 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : GFT (4,3)D HNNCABCA; GFT (4,3)D REMARK 210 CABCA(CO)NHN; GFT (4,3)D REMARK 210 HABCAB(CO)NHN; GFT (4,3) HCCH; REMARK 210 SIMULTANEOUS HETERONUCLEAR REMARK 210 RESOLVED -NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.3, XEASY 1.3.1.3, REMARK 210 DYANA 1.5, AUTOASSIGN 1.13.2, REMARK 210 CYANA 1.0.5, AUTOSTRUCTURE 2.0.0 REMARK 210 METHOD USED : SIMULATED ANNEALING MOLECULAR REMARK 210 DYNAMICS TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: HIGH THROUGHPUT STRUCTURE DETERMINATION BY GFT NMR REMARK 210 TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 9 H LEU A 13 1.50 REMARK 500 H ILE A 41 O ALA A 49 1.55 REMARK 500 O SER A 78 H ALA A 82 1.56 REMARK 500 O GLU A 50 H ARG A 106 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 26 147.96 -173.93 REMARK 500 1 ALA A 28 -84.29 -42.39 REMARK 500 1 TYR A 29 160.21 56.49 REMARK 500 1 GLN A 31 -9.72 83.77 REMARK 500 1 LEU A 32 -59.13 -138.70 REMARK 500 1 ILE A 35 154.81 -40.34 REMARK 500 1 LEU A 46 -43.38 -165.96 REMARK 500 1 THR A 59 124.15 69.14 REMARK 500 1 TYR A 90 87.96 54.96 REMARK 500 1 GLU A 95 165.72 178.08 REMARK 500 1 ARG A 110 162.16 -44.40 REMARK 500 2 LYS A 21 99.75 -55.80 REMARK 500 2 ARG A 26 59.28 -145.57 REMARK 500 2 VAL A 27 141.33 62.18 REMARK 500 2 ALA A 28 -84.57 -63.36 REMARK 500 2 TYR A 29 153.34 59.16 REMARK 500 2 GLN A 31 -5.43 80.98 REMARK 500 2 LEU A 32 -59.74 -140.45 REMARK 500 2 ILE A 35 156.18 -41.19 REMARK 500 2 LEU A 46 -45.71 -162.32 REMARK 500 2 GLU A 58 -60.85 -97.91 REMARK 500 2 MET A 89 -46.79 -174.66 REMARK 500 2 LYS A 92 157.79 -47.41 REMARK 500 2 TRP A 93 110.22 66.48 REMARK 500 2 LYS A 94 -74.82 -54.82 REMARK 500 2 TYR A 98 -49.09 -159.42 REMARK 500 2 VAL A 100 73.27 -153.94 REMARK 500 2 ARG A 110 153.31 -39.08 REMARK 500 2 LYS A 112 -178.51 -60.64 REMARK 500 3 ARG A 26 -70.67 -164.56 REMARK 500 3 TYR A 29 160.59 -47.80 REMARK 500 3 GLN A 31 -55.75 -165.15 REMARK 500 3 ILE A 35 161.35 -43.70 REMARK 500 3 LEU A 46 -44.82 -161.01 REMARK 500 3 LYS A 76 64.40 62.90 REMARK 500 3 PHE A 86 48.98 -83.69 REMARK 500 3 HIS A 87 -54.39 -167.59 REMARK 500 3 LYS A 94 -55.01 -148.57 REMARK 500 3 GLU A 95 82.36 63.02 REMARK 500 3 ARG A 110 164.52 -42.88 REMARK 500 4 ARG A 22 -45.88 -143.48 REMARK 500 4 ALA A 28 -107.45 54.45 REMARK 500 4 TYR A 29 172.20 52.44 REMARK 500 4 GLN A 31 -64.30 -156.29 REMARK 500 4 ILE A 35 152.27 -41.59 REMARK 500 4 LEU A 46 -46.31 -156.56 REMARK 500 4 GLU A 53 145.64 -172.53 REMARK 500 4 HIS A 87 -56.09 176.84 REMARK 500 4 ASN A 88 88.77 -65.21 REMARK 500 4 MET A 89 121.25 179.94 REMARK 500 REMARK 500 THIS ENTRY HAS 303 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PFR14 RELATED DB: TARGETDB DBREF 1XNE A 1 113 UNP Q8U3J6 Q8U3J6_PYRFU 1 113 SEQRES 1 A 113 MET LYS VAL TYR ARG LEU TYR LEU LYS ASP GLU TYR LEU SEQRES 2 A 113 GLU MET VAL LYS SER GLY LYS LYS ARG ILE GLU VAL ARG SEQRES 3 A 113 VAL ALA TYR PRO GLN LEU LYS ASP ILE LYS ARG GLY ASP SEQRES 4 A 113 LYS ILE ILE PHE ASN ASP LEU ILE PRO ALA GLU VAL VAL SEQRES 5 A 113 GLU VAL LYS LYS TYR GLU THR PHE ARG GLN VAL LEU ARG SEQRES 6 A 113 GLU GLU PRO ILE ASP LYS ILE PHE PRO ASP LYS PRO SER SEQRES 7 A 113 PHE GLU LYS ALA LEU LYS ARG PHE HIS ASN MET TYR PRO SEQRES 8 A 113 LYS TRP LYS GLU TYR ARG TYR GLY VAL LEU ALA ILE LYS SEQRES 9 A 113 PHE ARG VAL LEU GLY ARG ASP LYS GLU HELIX 1 1 LYS A 9 GLY A 19 1 11 HELIX 2 2 THR A 59 GLU A 67 1 9 HELIX 3 3 PRO A 68 PHE A 73 1 6 HELIX 4 4 SER A 78 HIS A 87 1 10 SHEET 1 A 5 VAL A 3 LEU A 6 0 SHEET 2 A 5 LYS A 40 PHE A 43 1 O ILE A 42 N LEU A 6 SHEET 3 A 5 ILE A 47 LYS A 56 -1 O ALA A 49 N ILE A 41 SHEET 4 A 5 LEU A 101 VAL A 107 -1 O ARG A 106 N GLU A 50 SHEET 5 A 5 ILE A 23 VAL A 25 -1 N GLU A 24 O ILE A 103 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1