data_1XPF # _entry.id 1XPF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1XPF NDB UR0047 RCSB RCSB030611 WWPDB D_1000030611 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1JJM . unspecified PDB 1JJN . unspecified PDB 1K9W . unspecified PDB 1XP7 'HIV-1 subtype F' unspecified PDB 1XPE 'HIV-1 subtype B' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1XPF _pdbx_database_status.recvd_initial_deposition_date 2004-10-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ennifar, E.' 1 'Dumas, P.' 2 # _citation.id primary _citation.title 'Polymorphism of Bulged-out Residues in HIV-1 RNA DIS Kissing Complex and Structure Comparison with Solution Studies' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 356 _citation.page_first 771 _citation.page_last 782 _citation.year 2006 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16403527 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2005.12.022 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Ennifar, E.' 1 primary 'Dumas, P.' 2 # _cell.entry_id 1XPF _cell.length_a 28.364 _cell.length_b 120.209 _cell.length_c 97.969 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1XPF _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'" 7402.472 2 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 5 non-polymer syn SPERMINE 202.340 1 ? ? ? ? 6 water nat water 18.015 88 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'HIV-1 genomic RNA' # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CUUGCUGAGGUGCACACAGCAAG _entity_poly.pdbx_seq_one_letter_code_can CUUGCUGAGGUGCACACAGCAAG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 U n 1 3 U n 1 4 G n 1 5 C n 1 6 U n 1 7 G n 1 8 A n 1 9 G n 1 10 G n 1 11 U n 1 12 G n 1 13 C n 1 14 A n 1 15 C n 1 16 A n 1 17 C n 1 18 A n 1 19 G n 1 20 C n 1 21 A n 1 22 A n 1 23 G n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1XPF _struct_ref.pdbx_db_accession 1XPF _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1XPF A 1 ? 23 ? 1XPF 1 ? 23 ? 1 23 2 1 1XPF B 1 ? 23 ? 1XPF 1 ? 23 ? 1 23 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 1XPF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.82 _exptl_crystal.density_percent_sol 56.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 310 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'PEG8000, Ammonium sulfate, MgCl2, Na Cacodylate, spermine, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 310K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 PEG8000 ? ? ? 1 2 1 'Ammonium sulfate' ? ? ? 1 3 1 MgCl2 ? ? ? 1 4 1 'Na Cacodylate' ? ? ? 1 5 1 spermine ? ? ? 1 6 2 PEG8000 ? ? ? 1 7 2 'Ammonium sulfate' ? ? ? 1 8 2 MgCl2 ? ? ? 1 9 2 'Na Cacodylate' ? ? ? 1 10 2 spermine ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 90 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator CRYSTAL _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.933 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.933 # _reflns.entry_id 1XPF _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.3 _reflns.number_obs ? _reflns.number_all ? _reflns.percent_possible_obs 95.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.05 _reflns.pdbx_netI_over_sigmaI 22.0 _reflns.B_iso_Wilson_estimate 41.1 _reflns.pdbx_redundancy 4.9 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.3 _reflns_shell.d_res_low ? _reflns_shell.percent_possible_all 92.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.202 _reflns_shell.meanI_over_sigI_obs 7.6 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1XPF _refine.ls_number_reflns_obs 7011 _refine.ls_number_reflns_all 7834 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.0 _refine.pdbx_data_cutoff_high_absF 847446.67 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.63 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 89.5 _refine.ls_R_factor_obs 0.243 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.243 _refine.ls_R_factor_R_free 0.246 _refine.ls_R_factor_R_free_error 0.012 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 6.3 _refine.ls_number_reflns_R_free 440 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 37.9 _refine.aniso_B[1][1] 1.86 _refine.aniso_B[2][2] -8.41 _refine.aniso_B[3][3] 6.55 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.339761 _refine.solvent_model_param_bsol 65.997 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1XPF _refine_analyze.Luzzati_coordinate_error_obs 0.37 _refine_analyze.Luzzati_sigma_a_obs 0.45 _refine_analyze.Luzzati_d_res_low_obs 10.00 _refine_analyze.Luzzati_coordinate_error_free 0.38 _refine_analyze.Luzzati_sigma_a_free 0.43 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 980 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 88 _refine_hist.number_atoms_total 1101 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 19.63 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.1 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 15.8 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.50 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.30 _refine_ls_shell.d_res_low 2.44 _refine_ls_shell.number_reflns_R_work 945 _refine_ls_shell.R_factor_R_work 0.392 _refine_ls_shell.percent_reflns_obs 78.8 _refine_ls_shell.R_factor_R_free 0.377 _refine_ls_shell.R_factor_R_free_error 0.050 _refine_ls_shell.percent_reflns_R_free 5.7 _refine_ls_shell.number_reflns_R_free 57 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM ION.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 DNA-RNA_REP.PARAM ION.TOP 'X-RAY DIFFRACTION' 4 ION.PARAM SPERMINE.TOP 'X-RAY DIFFRACTION' 5 SPERMINE.PARAM ? 'X-RAY DIFFRACTION' # _struct.entry_id 1XPF _struct.title 'HIV-1 subtype A genomic RNA Dimerization Initiation Site' _struct.pdbx_descriptor "5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'" _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1XPF _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA, LOOP-LOOP COMPLEX, HIV-1' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 2 ? G N N 3 ? H N N 5 ? I N N 2 ? J N N 3 ? K N N 6 ? L N N 6 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? G MG . MG ? ? ? 1_555 A G 12 OP1 ? ? A MG 107 A G 12 1_555 ? ? ? ? ? ? ? 2.342 ? metalc2 metalc ? ? A C 1 "O2'" ? ? ? 1_555 E NA . NA ? ? A C 1 A NA 105 1_555 ? ? ? ? ? ? ? 2.878 ? metalc3 metalc ? ? A C 1 O2 ? ? ? 1_555 E NA . NA ? ? A C 1 A NA 105 1_555 ? ? ? ? ? ? ? 2.779 ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 A G 23 N1 ? ? A C 1 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 A G 23 O6 ? ? A C 1 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 A G 23 N2 ? ? A C 1 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A U 2 N3 ? ? ? 1_555 A A 22 N1 ? ? A U 2 A A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A U 2 O4 ? ? ? 1_555 A A 22 N6 ? ? A U 2 A A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A U 3 N3 ? ? ? 1_555 A A 21 N1 ? ? A U 3 A A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A U 3 O4 ? ? ? 1_555 A A 21 N6 ? ? A U 3 A A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 20 N3 ? ? A G 4 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 20 O2 ? ? A G 4 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 20 N4 ? ? A G 4 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 19 N2 ? ? A C 5 A G 19 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? hydrog12 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 18 N1 ? ? A U 6 A A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 18 N6 ? ? A U 6 A A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 17 N3 ? ? A G 7 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 17 O2 ? ? A G 7 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 17 N4 ? ? A G 7 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 15 N3 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 15 O2 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 15 N4 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A U 11 N3 ? ? ? 1_555 B A 14 N1 ? ? A U 11 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A U 11 O4 ? ? ? 1_555 B A 14 N6 ? ? A U 11 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A G 12 N1 ? ? ? 1_555 B C 13 N3 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A G 12 N2 ? ? ? 1_555 B C 13 O2 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A G 12 O6 ? ? ? 1_555 B C 13 N4 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A C 13 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A C 13 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? A C 13 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A A 14 N1 ? ? ? 1_555 B U 11 N3 ? ? A A 14 B U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A A 14 N6 ? ? ? 1_555 B U 11 O4 ? ? A A 14 B U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A C 15 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A C 15 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? A C 15 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? B C 1 N3 ? ? ? 1_555 B G 23 N1 ? ? B C 1 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? B C 1 N4 ? ? ? 1_555 B G 23 O6 ? ? B C 1 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? B C 1 O2 ? ? ? 1_555 B G 23 N2 ? ? B C 1 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? B U 2 N3 ? ? ? 1_555 B A 22 N1 ? ? B U 2 B A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? B U 2 O4 ? ? ? 1_555 B A 22 N6 ? ? B U 2 B A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? B U 3 N3 ? ? ? 1_555 B A 21 N1 ? ? B U 3 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? B U 3 O4 ? ? ? 1_555 B A 21 N6 ? ? B U 3 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 20 N3 ? ? B G 4 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog41 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 20 O2 ? ? B G 4 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog42 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 20 N4 ? ? B G 4 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog43 hydrog ? ? B C 5 N3 ? ? ? 1_555 B G 19 N1 ? ? B C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog44 hydrog ? ? B C 5 N4 ? ? ? 1_555 B G 19 O6 ? ? B C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog45 hydrog ? ? B C 5 O2 ? ? ? 1_555 B G 19 N2 ? ? B C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog46 hydrog ? ? B U 6 N3 ? ? ? 1_555 B A 18 N1 ? ? B U 6 B A 18 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? hydrog47 hydrog ? ? B G 7 N1 ? ? ? 1_555 B C 17 N3 ? ? B G 7 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog48 hydrog ? ? B G 7 N2 ? ? ? 1_555 B C 17 O2 ? ? B G 7 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog49 hydrog ? ? B G 7 O6 ? ? ? 1_555 B C 17 N4 ? ? B G 7 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 B 101' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 102' AC3 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE NA A 105' AC4 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE SO4 A 106' AC5 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE MG A 107' AC6 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE SPM A 108' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 HOH K . ? HOH A 146 . ? 5_445 ? 2 AC1 3 C B 1 ? C B 1 . ? 1_555 ? 3 AC1 3 HOH L . ? HOH B 136 . ? 1_555 ? 4 AC2 5 A A 8 ? A A 8 . ? 1_555 ? 5 AC2 5 G A 9 ? G A 9 . ? 1_555 ? 6 AC2 5 HOH K . ? HOH A 134 . ? 1_555 ? 7 AC2 5 HOH K . ? HOH A 144 . ? 1_555 ? 8 AC2 5 A B 8 ? A B 8 . ? 3_656 ? 9 AC3 2 C A 1 ? C A 1 . ? 1_555 ? 10 AC3 2 U A 2 ? U A 2 . ? 1_555 ? 11 AC4 1 C A 1 ? C A 1 . ? 1_555 ? 12 AC5 1 G A 12 ? G A 12 . ? 1_555 ? 13 AC6 8 G A 9 ? G A 9 . ? 1_555 ? 14 AC6 8 G A 10 ? G A 10 . ? 1_555 ? 15 AC6 8 U A 11 ? U A 11 . ? 1_555 ? 16 AC6 8 HOH K . ? HOH A 110 . ? 1_555 ? 17 AC6 8 HOH K . ? HOH A 124 . ? 1_555 ? 18 AC6 8 HOH K . ? HOH A 138 . ? 1_555 ? 19 AC6 8 G B 10 ? G B 10 . ? 1_555 ? 20 AC6 8 HOH L . ? HOH B 119 . ? 1_555 ? # _database_PDB_matrix.entry_id 1XPF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1XPF _atom_sites.fract_transf_matrix[1][1] 0.035256 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008319 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010207 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N NA O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 U 2 2 2 U U A . n A 1 3 U 3 3 3 U U A . n A 1 4 G 4 4 4 G G A . n A 1 5 C 5 5 5 C C A . n A 1 6 U 6 6 6 U U A . n A 1 7 G 7 7 7 G G A . n A 1 8 A 8 8 8 A A A . n A 1 9 G 9 9 9 G G A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 G 12 12 12 G G A . n A 1 13 C 13 13 13 C C A . n A 1 14 A 14 14 14 A A A . n A 1 15 C 15 15 15 C C A . n A 1 16 A 16 16 16 A A A . n A 1 17 C 17 17 17 C C A . n A 1 18 A 18 18 18 A A A . n A 1 19 G 19 19 19 G G A . n A 1 20 C 20 20 20 C C A . n A 1 21 A 21 21 21 A A A . n A 1 22 A 22 22 22 A A A . n A 1 23 G 23 23 23 G G A . n B 1 1 C 1 1 1 C C B . n B 1 2 U 2 2 2 U U B . n B 1 3 U 3 3 3 U U B . n B 1 4 G 4 4 4 G G B . n B 1 5 C 5 5 5 C C B . n B 1 6 U 6 6 6 U U B . n B 1 7 G 7 7 7 G G B . n B 1 8 A 8 8 8 A A B . n B 1 9 G 9 9 9 G G B . n B 1 10 G 10 10 10 G G B . n B 1 11 U 11 11 11 U U B . n B 1 12 G 12 12 12 G G B . n B 1 13 C 13 13 13 C C B . n B 1 14 A 14 14 14 A A B . n B 1 15 C 15 15 15 C C B . n B 1 16 A 16 16 16 A A B . n B 1 17 C 17 17 17 C C B . n B 1 18 A 18 18 18 A A B . n B 1 19 G 19 19 19 G G B . n B 1 20 C 20 20 20 C C B . n B 1 21 A 21 21 21 A A B . n B 1 22 A 22 22 22 A A B . n B 1 23 G 23 23 23 G G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 1 102 102 SO4 SO4 A . D 3 MG 1 104 104 MG MG A . E 4 NA 1 105 105 NA NA A . F 2 SO4 1 106 106 SO4 SO4 A . G 3 MG 1 107 107 MG MG A . H 5 SPM 1 108 1 SPM SPM A . I 2 SO4 1 101 101 SO4 SO4 B . J 3 MG 1 103 103 MG MG B . K 6 HOH 1 109 2 HOH HOH A . K 6 HOH 2 110 5 HOH HOH A . K 6 HOH 3 111 6 HOH HOH A . K 6 HOH 4 112 9 HOH HOH A . K 6 HOH 5 113 12 HOH HOH A . K 6 HOH 6 114 15 HOH HOH A . K 6 HOH 7 115 17 HOH HOH A . K 6 HOH 8 116 19 HOH HOH A . K 6 HOH 9 117 20 HOH HOH A . K 6 HOH 10 118 21 HOH HOH A . K 6 HOH 11 119 23 HOH HOH A . K 6 HOH 12 120 25 HOH HOH A . K 6 HOH 13 121 26 HOH HOH A . K 6 HOH 14 122 27 HOH HOH A . K 6 HOH 15 123 28 HOH HOH A . K 6 HOH 16 124 29 HOH HOH A . K 6 HOH 17 125 30 HOH HOH A . K 6 HOH 18 126 34 HOH HOH A . K 6 HOH 19 127 36 HOH HOH A . K 6 HOH 20 128 37 HOH HOH A . K 6 HOH 21 129 39 HOH HOH A . K 6 HOH 22 130 49 HOH HOH A . K 6 HOH 23 131 51 HOH HOH A . K 6 HOH 24 132 52 HOH HOH A . K 6 HOH 25 133 54 HOH HOH A . K 6 HOH 26 134 55 HOH HOH A . K 6 HOH 27 135 57 HOH HOH A . K 6 HOH 28 136 58 HOH HOH A . K 6 HOH 29 137 59 HOH HOH A . K 6 HOH 30 138 61 HOH HOH A . K 6 HOH 31 139 62 HOH HOH A . K 6 HOH 32 140 63 HOH HOH A . K 6 HOH 33 141 64 HOH HOH A . K 6 HOH 34 142 65 HOH HOH A . K 6 HOH 35 143 66 HOH HOH A . K 6 HOH 36 144 67 HOH HOH A . K 6 HOH 37 145 69 HOH HOH A . K 6 HOH 38 146 71 HOH HOH A . K 6 HOH 39 147 73 HOH HOH A . K 6 HOH 40 148 74 HOH HOH A . K 6 HOH 41 149 77 HOH HOH A . K 6 HOH 42 150 80 HOH HOH A . K 6 HOH 43 151 81 HOH HOH A . K 6 HOH 44 152 83 HOH HOH A . K 6 HOH 45 153 86 HOH HOH A . K 6 HOH 46 154 87 HOH HOH A . K 6 HOH 47 155 90 HOH HOH A . L 6 HOH 1 104 3 HOH HOH B . L 6 HOH 2 105 7 HOH HOH B . L 6 HOH 3 106 8 HOH HOH B . L 6 HOH 4 107 10 HOH HOH B . L 6 HOH 5 108 11 HOH HOH B . L 6 HOH 6 109 14 HOH HOH B . L 6 HOH 7 110 16 HOH HOH B . L 6 HOH 8 111 18 HOH HOH B . L 6 HOH 9 112 22 HOH HOH B . L 6 HOH 10 113 24 HOH HOH B . L 6 HOH 11 114 31 HOH HOH B . L 6 HOH 12 115 32 HOH HOH B . L 6 HOH 13 116 33 HOH HOH B . L 6 HOH 14 117 38 HOH HOH B . L 6 HOH 15 118 40 HOH HOH B . L 6 HOH 16 119 41 HOH HOH B . L 6 HOH 17 120 42 HOH HOH B . L 6 HOH 18 121 43 HOH HOH B . L 6 HOH 19 122 44 HOH HOH B . L 6 HOH 20 123 45 HOH HOH B . L 6 HOH 21 124 46 HOH HOH B . L 6 HOH 22 125 47 HOH HOH B . L 6 HOH 23 126 48 HOH HOH B . L 6 HOH 24 127 50 HOH HOH B . L 6 HOH 25 128 53 HOH HOH B . L 6 HOH 26 129 56 HOH HOH B . L 6 HOH 27 130 60 HOH HOH B . L 6 HOH 28 131 68 HOH HOH B . L 6 HOH 29 132 70 HOH HOH B . L 6 HOH 30 133 72 HOH HOH B . L 6 HOH 31 134 75 HOH HOH B . L 6 HOH 32 135 76 HOH HOH B . L 6 HOH 33 136 78 HOH HOH B . L 6 HOH 34 137 79 HOH HOH B . L 6 HOH 35 138 82 HOH HOH B . L 6 HOH 36 139 84 HOH HOH B . L 6 HOH 37 140 85 HOH HOH B . L 6 HOH 38 141 88 HOH HOH B . L 6 HOH 39 142 89 HOH HOH B . L 6 HOH 40 143 91 HOH HOH B . L 6 HOH 41 144 92 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id "O2'" _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id C _pdbx_struct_conn_angle.ptnr1_label_seq_id 1 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id C _pdbx_struct_conn_angle.ptnr1_auth_seq_id 1 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id NA _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id E _pdbx_struct_conn_angle.ptnr2_label_comp_id NA _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id NA _pdbx_struct_conn_angle.ptnr2_auth_seq_id 105 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id O2 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id A _pdbx_struct_conn_angle.ptnr3_label_comp_id C _pdbx_struct_conn_angle.ptnr3_label_seq_id 1 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id C _pdbx_struct_conn_angle.ptnr3_auth_seq_id 1 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 80.0 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-10-18 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 # _ndb_struct_conf_na.entry_id 1XPF _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 A G 23 1_555 0.011 0.001 -0.084 10.531 -15.953 -2.355 1 A_C1:G23_A A 1 ? A 23 ? 19 1 1 A U 2 1_555 A A 22 1_555 0.047 0.306 0.016 1.523 -17.687 2.274 2 A_U2:A22_A A 2 ? A 22 ? 20 1 1 A U 3 1_555 A A 21 1_555 -0.044 0.234 -0.045 3.868 -13.619 -0.316 3 A_U3:A21_A A 3 ? A 21 ? 20 1 1 A G 4 1_555 A C 20 1_555 0.079 0.123 -0.120 -1.149 -13.482 -2.896 4 A_G4:C20_A A 4 ? A 20 ? 19 1 1 A C 5 1_555 A G 19 1_555 -0.118 0.443 -0.202 6.524 -14.747 4.216 5 A_C5:G19_A A 5 ? A 19 ? ? 1 1 A U 6 1_555 A A 18 1_555 0.005 0.316 0.091 -0.234 -14.145 4.246 6 A_U6:A18_A A 6 ? A 18 ? 20 1 1 A G 7 1_555 A C 17 1_555 0.252 0.317 -0.026 -1.936 -10.981 -0.140 7 A_G7:C17_A A 7 ? A 17 ? 19 1 1 A G 10 1_555 B C 15 1_555 -0.286 0.043 -0.228 -14.381 -10.058 0.329 8 A_G10:C15_B A 10 ? B 15 ? 19 1 1 A U 11 1_555 B A 14 1_555 -0.184 0.181 0.169 -9.340 -10.863 -0.105 9 A_U11:A14_B A 11 ? B 14 ? 20 1 1 A G 12 1_555 B C 13 1_555 -0.110 0.196 0.112 3.010 -1.888 -1.640 10 A_G12:C13_B A 12 ? B 13 ? 19 1 1 A C 13 1_555 B G 12 1_555 0.193 0.252 -0.236 4.031 -11.836 0.527 11 A_C13:G12_B A 13 ? B 12 ? 19 1 1 A A 14 1_555 B U 11 1_555 0.245 0.266 0.521 14.303 -5.893 -4.273 12 A_A14:U11_B A 14 ? B 11 ? 20 1 1 A C 15 1_555 B G 10 1_555 0.270 0.077 -0.341 17.020 -10.516 0.852 13 A_C15:G10_B A 15 ? B 10 ? 19 1 1 B C 1 1_555 B G 23 1_555 0.157 0.196 0.071 8.353 -15.613 -2.578 14 B_C1:G23_B B 1 ? B 23 ? 19 1 1 B U 2 1_555 B A 22 1_555 -0.103 0.277 0.149 -3.104 -16.159 0.614 15 B_U2:A22_B B 2 ? B 22 ? 20 1 1 B U 3 1_555 B A 21 1_555 -0.122 0.225 0.037 1.431 -9.854 3.491 16 B_U3:A21_B B 3 ? B 21 ? 20 1 1 B G 4 1_555 B C 20 1_555 -0.095 0.175 0.224 1.553 -11.733 1.646 17 B_G4:C20_B B 4 ? B 20 ? 19 1 1 B C 5 1_555 B G 19 1_555 0.255 0.071 -0.117 2.643 -16.789 0.664 18 B_C5:G19_B B 5 ? B 19 ? 19 1 1 B U 6 1_555 B A 18 1_555 0.335 0.345 -0.002 -4.317 -15.907 9.109 19 B_U6:A18_B B 6 ? B 18 ? ? ? 1 B G 7 1_555 B C 17 1_555 0.234 0.289 0.133 5.151 -7.768 -0.333 20 B_G7:C17_B B 7 ? B 17 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 A G 23 1_555 A U 2 1_555 A A 22 1_555 -0.213 -1.719 3.574 -2.545 8.808 35.082 -4.043 -0.026 3.074 14.311 4.135 36.224 1 AA_C1U2:A22G23_AA A 1 ? A 23 ? A 2 ? A 22 ? 1 A U 2 1_555 A A 22 1_555 A U 3 1_555 A A 21 1_555 -0.430 -1.201 3.262 -1.273 10.614 33.030 -3.557 0.536 2.770 18.088 2.169 34.671 2 AA_U2U3:A21A22_AA A 2 ? A 22 ? A 3 ? A 21 ? 1 A U 3 1_555 A A 21 1_555 A G 4 1_555 A C 20 1_555 -0.327 -1.757 3.484 -0.506 12.059 28.985 -5.441 0.513 2.571 22.880 0.959 31.348 3 AA_U3G4:C20A21_AA A 3 ? A 21 ? A 4 ? A 20 ? 1 A G 4 1_555 A C 20 1_555 A C 5 1_555 A G 19 1_555 0.306 -1.446 3.241 -0.450 4.705 31.526 -3.455 -0.635 2.995 8.599 0.822 31.870 4 AA_G4C5:G19C20_AA A 4 ? A 20 ? A 5 ? A 19 ? 1 A C 5 1_555 A G 19 1_555 A U 6 1_555 A A 18 1_555 0.412 -1.400 3.526 -1.043 8.740 32.963 -3.810 -0.872 3.052 15.070 1.798 34.087 5 AA_C5U6:A18G19_AA A 5 ? A 19 ? A 6 ? A 18 ? 1 A U 6 1_555 A A 18 1_555 A G 7 1_555 A C 17 1_555 -0.080 -1.625 3.344 3.183 17.791 29.483 -5.210 0.577 2.044 31.505 -5.638 34.477 6 AA_U6G7:C17A18_AA A 6 ? A 18 ? A 7 ? A 17 ? 1 A G 10 1_555 B C 15 1_555 A U 11 1_555 B A 14 1_555 -0.511 -1.585 3.258 -4.152 1.226 33.566 -2.920 0.210 3.238 2.112 7.152 33.836 7 AA_G10U11:A14C15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A U 11 1_555 B A 14 1_555 A G 12 1_555 B C 13 1_555 -0.359 -1.499 3.014 0.405 6.082 32.262 -3.571 0.696 2.690 10.825 -0.720 32.817 8 AA_U11G12:C13A14_BB A 11 ? B 14 ? A 12 ? B 13 ? 1 A G 12 1_555 B C 13 1_555 A C 13 1_555 B G 12 1_555 0.115 -0.961 3.471 4.581 10.171 29.641 -3.681 0.653 2.972 19.053 -8.581 31.627 9 AA_G12C13:G12C13_BB A 12 ? B 13 ? A 13 ? B 12 ? 1 A C 13 1_555 B G 12 1_555 A A 14 1_555 B U 11 1_555 0.039 -1.548 3.027 -3.676 9.701 30.851 -4.218 -0.620 2.422 17.622 6.677 32.508 10 AA_C13A14:U11G12_BB A 13 ? B 12 ? A 14 ? B 11 ? 1 A A 14 1_555 B U 11 1_555 A C 15 1_555 B G 10 1_555 0.694 -1.356 3.377 6.619 6.356 31.122 -3.566 -0.060 3.124 11.535 -12.013 32.414 11 AA_A14C15:G10U11_BB A 14 ? B 11 ? A 15 ? B 10 ? 1 B C 1 1_555 B G 23 1_555 B U 2 1_555 B A 22 1_555 -0.487 -1.783 3.632 -3.788 11.989 32.094 -4.933 0.217 2.842 20.719 6.546 34.409 12 BB_C1U2:A22G23_BB B 1 ? B 23 ? B 2 ? B 22 ? 1 B U 2 1_555 B A 22 1_555 B U 3 1_555 B A 21 1_555 -0.024 -1.397 3.292 -2.077 3.610 32.315 -3.109 -0.313 3.117 6.452 3.713 32.575 13 BB_U2U3:A21A22_BB B 2 ? B 22 ? B 3 ? B 21 ? 1 B U 3 1_555 B A 21 1_555 B G 4 1_555 B C 20 1_555 -0.327 -1.513 3.166 -2.586 14.266 31.442 -4.485 0.200 2.304 24.746 4.485 34.547 14 BB_U3G4:C20A21_BB B 3 ? B 21 ? B 4 ? B 20 ? 1 B G 4 1_555 B C 20 1_555 B C 5 1_555 B G 19 1_555 -0.040 -1.607 3.337 1.283 4.592 33.175 -3.534 0.277 3.090 7.990 -2.232 33.506 15 BB_G4C5:G19C20_BB B 4 ? B 20 ? B 5 ? B 19 ? 1 B C 5 1_555 B G 19 1_555 B U 6 1_555 B A 18 1_555 0.654 -1.540 3.574 2.090 7.890 33.043 -3.951 -0.770 3.167 13.615 -3.606 34.009 16 BB_C5U6:A18G19_BB B 5 ? B 19 ? B 6 ? B 18 ? 1 B U 6 1_555 B A 18 1_555 B G 7 1_555 B C 17 1_555 -0.231 -1.526 3.107 1.923 16.052 28.350 -5.055 0.691 1.964 29.900 -3.582 32.553 17 BB_U6G7:C17A18_BB B 6 ? B 18 ? B 7 ? B 17 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 'MAGNESIUM ION' MG 4 'SODIUM ION' NA 5 SPERMINE SPM 6 water HOH #