data_1XR0 # _entry.id 1XR0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1XR0 pdb_00001xr0 10.2210/pdb1xr0/pdb RCSB RCSB030666 ? ? WWPDB D_1000030666 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1XR0 _pdbx_database_status.recvd_initial_deposition_date 2004-10-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dhalluin, C.' 1 'Yan, K.S.' 2 'Plotnikova, O.' 3 'Lee, K.W.' 4 'Zeng, L.' 5 'Kuti, M.' 6 'Mujtaba, S.' 7 'Goldfarb, M.P.' 8 'Zhou, M.-M.' 9 # _citation.id primary _citation.title 'Structural Basis of SNT PTB Domain Interactions with Distinct Neurotrophic Receptors' _citation.journal_abbrev Mol.Cell _citation.journal_volume 6 _citation.page_first 921 _citation.page_last 929 _citation.year 2000 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11090629 _citation.pdbx_database_id_DOI '10.1016/S1097-2765(05)00087-0' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dhalluin, C.' 1 ? primary 'Yan, K.S.' 2 ? primary 'Plotnikova, O.' 3 ? primary 'Lee, K.W.' 4 ? primary 'Zeng, L.' 5 ? primary 'Kuti, M.' 6 ? primary 'Mujtaba, S.' 7 ? primary 'Goldfarb, M.P.' 8 ? primary 'Zhou, M.-M.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Basic fibroblast growth factor receptor 1' 2492.983 1 ? ? 'Sequence database residues 409-430 from the juxtamembrane region of hFGFR1' ? 2 polymer man 'FGFR signalling adaptor SNT-1' 15005.791 1 ? ? 'PTB domain at the N terminus' ? # _entity_name_com.entity_id 1 _entity_name_com.name 'FGFR-1, bFGF-R, Fms-like tyrosine kinase-2, c-fgr' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no HSQMAVHKLAKSIPLRRQVTVS HSQMAVHKLAKSIPLRRQVTVS A ? 2 'polypeptide(L)' no no ;MGSDTVPDNHRNKFKVINVDDDGNELGSGIMELTDTELILYTRKRDSVKWHYLCLRRYGYDSNLFSFESGRRCQTGQGIF AFKCARAEELFNMLQEIMQNNSINVVEEPVVERNNHQTELEVPRTPRTP ; ;MGSDTVPDNHRNKFKVINVDDDGNELGSGIMELTDTELILYTRKRDSVKWHYLCLRRYGYDSNLFSFESGRRCQTGQGIF AFKCARAEELFNMLQEIMQNNSINVVEEPVVERNNHQTELEVPRTPRTP ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 SER n 1 3 GLN n 1 4 MET n 1 5 ALA n 1 6 VAL n 1 7 HIS n 1 8 LYS n 1 9 LEU n 1 10 ALA n 1 11 LYS n 1 12 SER n 1 13 ILE n 1 14 PRO n 1 15 LEU n 1 16 ARG n 1 17 ARG n 1 18 GLN n 1 19 VAL n 1 20 THR n 1 21 VAL n 1 22 SER n 2 1 MET n 2 2 GLY n 2 3 SER n 2 4 ASP n 2 5 THR n 2 6 VAL n 2 7 PRO n 2 8 ASP n 2 9 ASN n 2 10 HIS n 2 11 ARG n 2 12 ASN n 2 13 LYS n 2 14 PHE n 2 15 LYS n 2 16 VAL n 2 17 ILE n 2 18 ASN n 2 19 VAL n 2 20 ASP n 2 21 ASP n 2 22 ASP n 2 23 GLY n 2 24 ASN n 2 25 GLU n 2 26 LEU n 2 27 GLY n 2 28 SER n 2 29 GLY n 2 30 ILE n 2 31 MET n 2 32 GLU n 2 33 LEU n 2 34 THR n 2 35 ASP n 2 36 THR n 2 37 GLU n 2 38 LEU n 2 39 ILE n 2 40 LEU n 2 41 TYR n 2 42 THR n 2 43 ARG n 2 44 LYS n 2 45 ARG n 2 46 ASP n 2 47 SER n 2 48 VAL n 2 49 LYS n 2 50 TRP n 2 51 HIS n 2 52 TYR n 2 53 LEU n 2 54 CYS n 2 55 LEU n 2 56 ARG n 2 57 ARG n 2 58 TYR n 2 59 GLY n 2 60 TYR n 2 61 ASP n 2 62 SER n 2 63 ASN n 2 64 LEU n 2 65 PHE n 2 66 SER n 2 67 PHE n 2 68 GLU n 2 69 SER n 2 70 GLY n 2 71 ARG n 2 72 ARG n 2 73 CYS n 2 74 GLN n 2 75 THR n 2 76 GLY n 2 77 GLN n 2 78 GLY n 2 79 ILE n 2 80 PHE n 2 81 ALA n 2 82 PHE n 2 83 LYS n 2 84 CYS n 2 85 ALA n 2 86 ARG n 2 87 ALA n 2 88 GLU n 2 89 GLU n 2 90 LEU n 2 91 PHE n 2 92 ASN n 2 93 MET n 2 94 LEU n 2 95 GLN n 2 96 GLU n 2 97 ILE n 2 98 MET n 2 99 GLN n 2 100 ASN n 2 101 ASN n 2 102 SER n 2 103 ILE n 2 104 ASN n 2 105 VAL n 2 106 VAL n 2 107 GLU n 2 108 GLU n 2 109 PRO n 2 110 VAL n 2 111 VAL n 2 112 GLU n 2 113 ARG n 2 114 ASN n 2 115 ASN n 2 116 HIS n 2 117 GLN n 2 118 THR n 2 119 GLU n 2 120 LEU n 2 121 GLU n 2 122 VAL n 2 123 PRO n 2 124 ARG n 2 125 THR n 2 126 PRO n 2 127 ARG n 2 128 THR n 2 129 PRO n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'The peptide was chemically synthesized. The sequence is taken from Homo sapiens (human).' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP FGFR1_HUMAN P11362 1 HSQMAVHKLAKSIPLRRQVTVS 409 ? 2 UNP FRS2_HUMAN Q8WU20 2 ;DTVPDNHRNKFKVINVDDDGNELGSGIMELTDTELILYTRKRDSVKWHYLCLRRYGYDSNLFSFESGRRCQTGQGIFAFK CARAEELFNMLQEIMQNNSINVVEEPVVERNNHQTELEVPRTPRTP ; 11 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1XR0 A 1 ? 22 ? P11362 409 ? 430 ? 409 430 2 2 1XR0 B 4 ? 129 ? Q8WU20 11 ? 136 ? 11 136 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 2 1XR0 MET B 1 ? UNP Q8WU20 ? ? 'cloning artifact' 8 1 2 1XR0 GLY B 2 ? UNP Q8WU20 ? ? 'cloning artifact' 9 2 2 1XR0 SER B 3 ? UNP Q8WU20 ? ? 'cloning artifact' 10 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 HNHA 2 1 1 3D_13C-separated_NOESY 3 1 1 3D_15N-separated_NOESY 4 1 1 '2D NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength '15 mM DTT-d10, and 0.5 mM EDTA00 mM phosphate buffer,' _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;SNT-1 PTB domain/hFGFR1 peptide complex (1:1) of ~0.5 mM in 100 mM phosphate buffer of pH 6.5, 5 mM DTT-d10, and 0.5 mM EDTA in H2O/2H2O (9/1) or 2H2O ; _pdbx_nmr_sample_details.solvent_system 'H2O/2H2O (9/1) or 100% 2H2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Bruker DRX 500 2 ? Bruker DRX 600 # _pdbx_nmr_refine.entry_id 1XR0 _pdbx_nmr_refine.method ;Structures of the SNT-1 PTB domain in complex with the hFGFR1 peptide were calculated with a distance geometry and simulated annealing protocol by using the X-PLOR program ([4]). NOE distance and dihedral angle restraints were treated with a square-well potential of 50 kcal mol?1 ?2. A total of 2448 manually assigned NOE-derived distance restraints were obtained from the 15N- or 13C-edited NOESY data. Included in this figure are 251 intrapeptide and 258 intermolecular distance restraints. Additionally, 255 unambiguous and 52 ambiguous distance restraints were identified from the NOE data by using ARIA. The final structure calculations employed a total of 2755 NOE restraints obtained from the manual and the ARIA-assisted assignments, 2703 of which were unambiguously assigned NOE-derived distance restraints that comprise 1072 intraresidue, 466 sequential, 216 medium-range, and 949 long-range NOEs. In addition, 70 hydrogen-bond distance restraints for 35 hydrogen bonds and 19 -angle restraints were also used in the structure calculations. For the ensemble of the final 20 structures, no distance or torsional angle restraint was violated by more than 0.4 or 5, respectively. The distance-violation, dihedral-violation, and total energies were 74.4 1.7 kcal mol/1, 0.82 0.08 kcal mol/1, and 262.0 6.0 kcal mol/1, respectively. The Lennard-Jones potential, which was not used during any refinement stage, was 659.3 23.1 kcal mol/1 for the final structures. Ramachandran plot analysis by Procheck-NMR showed that in the final structures of the complex, 98.1% of the backbone geometries of the non-Gly and non-Pro residues in the complex (protein residues 18-116 and peptide residues (412-430) and nearly 100% in the secondary structure (protein residues 19-24, 35-40, 45-49, 52-57, 63-68, 71-76, 85-90, 94-107, and 111-115 and peptide residues 426-430) lie within energetically favorable or allowed regions. ; _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1XR0 _pdbx_nmr_details.text ;NMR spectra were acquired at 30C on a Bruker DRX600 or DRX500 spectrometer. The backbone and side chain 1H, 13C, and 15N resonances of the protein were assigned using deuterium-decoupled triple-resonance experiments of HNCA, HN(CO)CA, HNCACB, HN(CO)CACB, and (H)C(CO)NH-TOCSY ([34 and 30]) recorded by using uniformly 15N/13C-labeled and fractionally deuterated protein in complex with a nonisotopically labeled hFGFR1 peptide. The side chain assignments were completed using 3D HCCH-TOCSY ([7]) data collected from a uniformly 15N/13C labeled-protein/nonlabeled-peptide complex. NOE-derived distance restraints were obtained from 15N- or 13C-edited 3D NOESY spectra ([7]). -angle restraints were determined from 3JHN,H coupling constants measured in a 3D HNHA-J spectrum ([7]). Slowly exchanging amide protons were identified from a series of 2D 15N-HSQC spectra recorded after the H2O buffer was changed to 2H2O buffer. The peptide resonances were assigned using 13C/15N-filtered 2D NOESY and TOCSY spectra ([30]) collected from a 15N/13C labeled-protein/nonlabeled-peptide complex. The intermolecular NOEs used in defining the structure of the SNT-1 PTB domain/hFGFR1 complex were detected in 13C- or 15N-edited (F 1), 13C/15N-filtered (F 3) 3D NOESY spectra. All NMR spectra were processed with NMRPipe/NMRDraw ([8]) and analyzed using NMRView. ; # _pdbx_nmr_ensemble.entry_id 1XR0 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1XR0 _pdbx_nmr_representative.conformer_id ? _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal X-PLOR 3.851 'structure solution' Brunger 1 ARIA 1.1 refinement ;M. Nilges and S. O'Donoghue ; 2 # _exptl.entry_id 1XR0 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1XR0 _struct.title 'Structural Basis of SNT PTB Domain Interactions with Distinct Neurotrophic Receptors' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1XR0 _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN/GROWTH FACTOR RECEPTOR' _struct_keywords.text 'FGFR, SNT, phosphotyrosine binding domain, PTB, TRK, NPXpY motif, SIGNALING PROTEIN-GROWTH FACTOR RECEPTOR COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ARG _struct_conf.beg_label_asym_id B _struct_conf.beg_label_seq_id 86 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ASN _struct_conf.end_label_asym_id B _struct_conf.end_label_seq_id 101 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ARG _struct_conf.beg_auth_asym_id B _struct_conf.beg_auth_seq_id 93 _struct_conf.end_auth_comp_id ASN _struct_conf.end_auth_asym_id B _struct_conf.end_auth_seq_id 108 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id VAL _struct_mon_prot_cis.label_seq_id 122 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id VAL _struct_mon_prot_cis.auth_seq_id 129 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 123 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 130 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.34 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 19 ? THR A 20 ? VAL A 427 THR A 428 A 2 VAL B 106 ? GLU B 107 ? VAL B 113 GLU B 114 B 1 ASP B 46 ? TRP B 50 ? ASP B 53 TRP B 57 B 2 LEU B 38 ? THR B 42 ? LEU B 45 THR B 49 B 3 GLY B 29 ? LEU B 33 ? GLY B 36 LEU B 40 B 4 LYS B 13 ? VAL B 19 ? LYS B 20 VAL B 26 B 5 GLY B 78 ? LYS B 83 ? GLY B 85 LYS B 90 B 6 LEU B 64 ? SER B 69 ? LEU B 71 SER B 76 B 7 LEU B 55 ? TYR B 60 ? LEU B 62 TYR B 67 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 20 ? N THR A 428 O VAL B 106 ? O VAL B 113 B 1 2 O VAL B 48 ? O VAL B 55 N LEU B 40 ? N LEU B 47 B 2 3 O TYR B 41 ? O TYR B 48 N ILE B 30 ? N ILE B 37 B 3 4 O GLY B 29 ? O GLY B 36 N VAL B 16 ? N VAL B 23 B 4 5 N VAL B 19 ? N VAL B 26 O ALA B 81 ? O ALA B 88 B 5 6 O PHE B 80 ? O PHE B 87 N PHE B 67 ? N PHE B 74 B 6 7 O SER B 66 ? O SER B 73 N GLY B 59 ? N GLY B 66 # _database_PDB_matrix.entry_id 1XR0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1XR0 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 409 409 HIS HIS A . n A 1 2 SER 2 410 410 SER SER A . n A 1 3 GLN 3 411 411 GLN GLN A . n A 1 4 MET 4 412 412 MET MET A . n A 1 5 ALA 5 413 413 ALA ALA A . n A 1 6 VAL 6 414 414 VAL VAL A . n A 1 7 HIS 7 415 415 HIS HIS A . n A 1 8 LYS 8 416 416 LYS LYS A . n A 1 9 LEU 9 417 417 LEU LEU A . n A 1 10 ALA 10 418 418 ALA ALA A . n A 1 11 LYS 11 419 419 LYS LYS A . n A 1 12 SER 12 420 420 SER SER A . n A 1 13 ILE 13 421 421 ILE ILE A . n A 1 14 PRO 14 422 422 PRO PRO A . n A 1 15 LEU 15 423 423 LEU LEU A . n A 1 16 ARG 16 424 424 ARG ARG A . n A 1 17 ARG 17 425 425 ARG ARG A . n A 1 18 GLN 18 426 426 GLN GLN A . n A 1 19 VAL 19 427 427 VAL VAL A . n A 1 20 THR 20 428 428 THR THR A . n A 1 21 VAL 21 429 429 VAL VAL A . n A 1 22 SER 22 430 430 SER SER A . n B 2 1 MET 1 8 8 MET MET B . n B 2 2 GLY 2 9 9 GLY GLY B . n B 2 3 SER 3 10 10 SER SER B . n B 2 4 ASP 4 11 11 ASP ASP B . n B 2 5 THR 5 12 12 THR THR B . n B 2 6 VAL 6 13 13 VAL VAL B . n B 2 7 PRO 7 14 14 PRO PRO B . n B 2 8 ASP 8 15 15 ASP ASP B . n B 2 9 ASN 9 16 16 ASN ASN B . n B 2 10 HIS 10 17 17 HIS HIS B . n B 2 11 ARG 11 18 18 ARG ARG B . n B 2 12 ASN 12 19 19 ASN ASN B . n B 2 13 LYS 13 20 20 LYS LYS B . n B 2 14 PHE 14 21 21 PHE PHE B . n B 2 15 LYS 15 22 22 LYS LYS B . n B 2 16 VAL 16 23 23 VAL VAL B . n B 2 17 ILE 17 24 24 ILE ILE B . n B 2 18 ASN 18 25 25 ASN ASN B . n B 2 19 VAL 19 26 26 VAL VAL B . n B 2 20 ASP 20 27 27 ASP ASP B . n B 2 21 ASP 21 28 28 ASP ASP B . n B 2 22 ASP 22 29 29 ASP ASP B . n B 2 23 GLY 23 30 30 GLY GLY B . n B 2 24 ASN 24 31 31 ASN ASN B . n B 2 25 GLU 25 32 32 GLU GLU B . n B 2 26 LEU 26 33 33 LEU LEU B . n B 2 27 GLY 27 34 34 GLY GLY B . n B 2 28 SER 28 35 35 SER SER B . n B 2 29 GLY 29 36 36 GLY GLY B . n B 2 30 ILE 30 37 37 ILE ILE B . n B 2 31 MET 31 38 38 MET MET B . n B 2 32 GLU 32 39 39 GLU GLU B . n B 2 33 LEU 33 40 40 LEU LEU B . n B 2 34 THR 34 41 41 THR THR B . n B 2 35 ASP 35 42 42 ASP ASP B . n B 2 36 THR 36 43 43 THR THR B . n B 2 37 GLU 37 44 44 GLU GLU B . n B 2 38 LEU 38 45 45 LEU LEU B . n B 2 39 ILE 39 46 46 ILE ILE B . n B 2 40 LEU 40 47 47 LEU LEU B . n B 2 41 TYR 41 48 48 TYR TYR B . n B 2 42 THR 42 49 49 THR THR B . n B 2 43 ARG 43 50 50 ARG ARG B . n B 2 44 LYS 44 51 51 LYS LYS B . n B 2 45 ARG 45 52 52 ARG ARG B . n B 2 46 ASP 46 53 53 ASP ASP B . n B 2 47 SER 47 54 54 SER SER B . n B 2 48 VAL 48 55 55 VAL VAL B . n B 2 49 LYS 49 56 56 LYS LYS B . n B 2 50 TRP 50 57 57 TRP TRP B . n B 2 51 HIS 51 58 58 HIS HIS B . n B 2 52 TYR 52 59 59 TYR TYR B . n B 2 53 LEU 53 60 60 LEU LEU B . n B 2 54 CYS 54 61 61 CYS CYS B . n B 2 55 LEU 55 62 62 LEU LEU B . n B 2 56 ARG 56 63 63 ARG ARG B . n B 2 57 ARG 57 64 64 ARG ARG B . n B 2 58 TYR 58 65 65 TYR TYR B . n B 2 59 GLY 59 66 66 GLY GLY B . n B 2 60 TYR 60 67 67 TYR TYR B . n B 2 61 ASP 61 68 68 ASP ASP B . n B 2 62 SER 62 69 69 SER SER B . n B 2 63 ASN 63 70 70 ASN ASN B . n B 2 64 LEU 64 71 71 LEU LEU B . n B 2 65 PHE 65 72 72 PHE PHE B . n B 2 66 SER 66 73 73 SER SER B . n B 2 67 PHE 67 74 74 PHE PHE B . n B 2 68 GLU 68 75 75 GLU GLU B . n B 2 69 SER 69 76 76 SER SER B . n B 2 70 GLY 70 77 77 GLY GLY B . n B 2 71 ARG 71 78 78 ARG ARG B . n B 2 72 ARG 72 79 79 ARG ARG B . n B 2 73 CYS 73 80 80 CYS CYS B . n B 2 74 GLN 74 81 81 GLN GLN B . n B 2 75 THR 75 82 82 THR THR B . n B 2 76 GLY 76 83 83 GLY GLY B . n B 2 77 GLN 77 84 84 GLN GLN B . n B 2 78 GLY 78 85 85 GLY GLY B . n B 2 79 ILE 79 86 86 ILE ILE B . n B 2 80 PHE 80 87 87 PHE PHE B . n B 2 81 ALA 81 88 88 ALA ALA B . n B 2 82 PHE 82 89 89 PHE PHE B . n B 2 83 LYS 83 90 90 LYS LYS B . n B 2 84 CYS 84 91 91 CYS CYS B . n B 2 85 ALA 85 92 92 ALA ALA B . n B 2 86 ARG 86 93 93 ARG ARG B . n B 2 87 ALA 87 94 94 ALA ALA B . n B 2 88 GLU 88 95 95 GLU GLU B . n B 2 89 GLU 89 96 96 GLU GLU B . n B 2 90 LEU 90 97 97 LEU LEU B . n B 2 91 PHE 91 98 98 PHE PHE B . n B 2 92 ASN 92 99 99 ASN ASN B . n B 2 93 MET 93 100 100 MET MET B . n B 2 94 LEU 94 101 101 LEU LEU B . n B 2 95 GLN 95 102 102 GLN GLN B . n B 2 96 GLU 96 103 103 GLU GLU B . n B 2 97 ILE 97 104 104 ILE ILE B . n B 2 98 MET 98 105 105 MET MET B . n B 2 99 GLN 99 106 106 GLN GLN B . n B 2 100 ASN 100 107 107 ASN ASN B . n B 2 101 ASN 101 108 108 ASN ASN B . n B 2 102 SER 102 109 109 SER SER B . n B 2 103 ILE 103 110 110 ILE ILE B . n B 2 104 ASN 104 111 111 ASN ASN B . n B 2 105 VAL 105 112 112 VAL VAL B . n B 2 106 VAL 106 113 113 VAL VAL B . n B 2 107 GLU 107 114 114 GLU GLU B . n B 2 108 GLU 108 115 115 GLU GLU B . n B 2 109 PRO 109 116 116 PRO PRO B . n B 2 110 VAL 110 117 117 VAL VAL B . n B 2 111 VAL 111 118 118 VAL VAL B . n B 2 112 GLU 112 119 119 GLU GLU B . n B 2 113 ARG 113 120 120 ARG ARG B . n B 2 114 ASN 114 121 121 ASN ASN B . n B 2 115 ASN 115 122 122 ASN ASN B . n B 2 116 HIS 116 123 123 HIS HIS B . n B 2 117 GLN 117 124 124 GLN GLN B . n B 2 118 THR 118 125 125 THR THR B . n B 2 119 GLU 119 126 126 GLU GLU B . n B 2 120 LEU 120 127 127 LEU LEU B . n B 2 121 GLU 121 128 128 GLU GLU B . n B 2 122 VAL 122 129 129 VAL VAL B . n B 2 123 PRO 123 130 130 PRO PRO B . n B 2 124 ARG 124 131 131 ARG ARG B . n B 2 125 THR 125 132 132 THR THR B . n B 2 126 PRO 126 133 133 PRO PRO B . n B 2 127 ARG 127 134 134 ARG ARG B . n B 2 128 THR 128 135 135 THR THR B . n B 2 129 PRO 129 136 136 PRO PRO B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-11-02 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_assembly 3 4 'Structure model' pdbx_struct_oper_list 4 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 411 ? ? 61.86 -86.34 2 1 MET A 412 ? ? 50.11 -178.00 3 1 VAL A 414 ? ? -42.03 95.77 4 1 HIS A 415 ? ? -65.40 -173.67 5 1 PRO A 422 ? ? -64.72 75.09 6 1 GLN A 426 ? ? -161.08 73.55 7 1 ASP B 11 ? ? -161.25 33.08 8 1 ASN B 16 ? ? -64.62 74.34 9 1 HIS B 17 ? ? -160.75 54.30 10 1 LYS B 22 ? ? -59.15 82.99 11 1 GLU B 32 ? ? 60.75 141.03 12 1 SER B 35 ? ? 167.68 122.05 13 1 LEU B 40 ? ? -119.24 66.83 14 1 THR B 41 ? ? -54.15 -167.57 15 1 THR B 43 ? ? -163.83 54.06 16 1 GLU B 44 ? ? 178.49 139.61 17 1 LEU B 45 ? ? -101.64 67.50 18 1 LYS B 51 ? ? 47.92 27.05 19 1 ARG B 52 ? ? -152.46 -52.35 20 1 HIS B 58 ? ? -96.59 32.03 21 1 TYR B 59 ? ? 70.02 -80.57 22 1 LEU B 62 ? ? -59.81 -152.33 23 1 ARG B 63 ? ? -151.73 -44.63 24 1 SER B 69 ? ? 56.85 -84.68 25 1 ARG B 79 ? ? -156.49 -74.75 26 1 CYS B 80 ? ? 178.88 -155.55 27 1 GLN B 81 ? ? 69.85 -85.89 28 1 PHE B 98 ? ? -49.11 -70.83 29 1 VAL B 112 ? ? -143.95 54.28 30 1 VAL B 113 ? ? -44.22 99.72 31 1 VAL B 117 ? ? -146.65 34.88 32 1 VAL B 118 ? ? 41.10 96.12 33 1 ASN B 121 ? ? 61.70 -80.70 34 1 ASN B 122 ? ? 179.43 119.78 35 1 GLU B 128 ? ? -166.21 -49.25 36 1 THR B 135 ? ? 66.04 79.25 #