HEADER TRANSFERASE 13-OCT-04 1XR5 TITLE CRYSTAL STRUCTURE OF THE RNA-DEPENDENT RNA POLYMERASE 3D FROM HUMAN TITLE 2 RHINOVIRUS SEROTYPE 14 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA-DIRECTED RNA POLYMERASE; COMPND 5 EC: 2.7.7.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN RHINOVIRUS 14; SOURCE 3 ORGANISM_TAXID: 12131; SOURCE 4 GENE: P3D; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(D3) KEYWDS RNA-DEPENDENT RNA POLYMERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.A.LOVE,K.A.MAEGLEY,X.YU,R.A.FERRE,L.K.LINGARDO,W.DIEHL,H.E.PARGE, AUTHOR 2 P.S.DRAGOVICH,S.A.FUHRMAN REVDAT 3 14-FEB-24 1XR5 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1XR5 1 VERSN REVDAT 1 26-OCT-04 1XR5 0 SPRSDE 26-OCT-04 1XR5 1TEB JRNL AUTH R.A.LOVE,K.A.MAEGLEY,X.YU,R.A.FERRE,L.K.LINGARDO,W.DIEHL, JRNL AUTH 2 H.E.PARGE,P.S.DRAGOVICH,S.A.FUHRMAN JRNL TITL THE CRYSTAL STRUCTURE OF THE RNA-DEPENDENT RNA POLYMERASE JRNL TITL 2 FROM HUMAN RHINOVIRUS: A DUAL-FUNCTION TARGET FOR COMMON JRNL TITL 3 COLD ANTIVIRAL THERAPY JRNL REF STRUCTURE V. 12 1533 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15296746 JRNL DOI 10.1016/J.STR.2004.05.024 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 18615 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.267 REMARK 3 R VALUE (WORKING SET) : 0.265 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 609 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3720 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.4000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3678 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 2 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.05000 REMARK 3 B22 (A**2) : 2.05000 REMARK 3 B33 (A**2) : -3.08000 REMARK 3 B12 (A**2) : 1.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.754 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.381 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.334 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.864 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.912 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3766 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3428 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5108 ; 1.223 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8019 ; 1.229 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 459 ; 6.102 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;41.804 ;24.417 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;18.663 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 575 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4105 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 734 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 855 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4009 ; 0.221 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2575 ; 0.322 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2156 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 41 ; 0.161 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.080 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.147 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 36 ; 0.193 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2298 ; 0.512 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3748 ; 0.976 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1468 ; 0.963 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1360 ; 1.782 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1XR5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1000030671. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.844 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36073 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : 0.10200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 32.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : 0.41000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM FORMATE, GLYCEROL, PH 7.00, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 286K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.03767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 102.07533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 102.07533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 51.03767 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 461 REMARK 465 HIS A 462 REMARK 465 HIS A 463 REMARK 465 HIS A 464 REMARK 465 HIS A 465 REMARK 465 HIS A 466 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 215 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 76.18 49.51 REMARK 500 PRO A 20 105.71 -42.63 REMARK 500 LYS A 38 124.38 -27.04 REMARK 500 ASP A 47 98.01 -10.27 REMARK 500 ASN A 65 110.02 -175.00 REMARK 500 ASP A 89 73.01 52.47 REMARK 500 LEU A 97 -33.05 -34.08 REMARK 500 LEU A 170 8.02 -69.36 REMARK 500 SER A 173 114.71 -29.55 REMARK 500 SER A 219 47.47 -78.02 REMARK 500 VAL A 220 -24.89 -170.97 REMARK 500 HIS A 228 -159.60 -71.84 REMARK 500 CYS A 268 -70.66 -61.02 REMARK 500 ARG A 275 -91.72 64.10 REMARK 500 ASP A 276 -77.00 -123.14 REMARK 500 GLU A 277 99.25 -11.65 REMARK 500 SER A 287 88.27 -65.38 REMARK 500 SER A 290 -71.91 -61.99 REMARK 500 LYS A 313 -69.80 -108.81 REMARK 500 THR A 352 77.71 -117.25 REMARK 500 PHE A 362 98.82 -44.40 REMARK 500 PRO A 406 25.31 -68.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SM A 901 SM REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 233 OD1 REMARK 620 2 ASP A 233 OD2 46.9 REMARK 620 3 ASP A 327 OD1 66.0 90.4 REMARK 620 4 ASP A 327 OD2 109.6 119.2 43.7 REMARK 620 5 ASP A 328 OD2 131.5 86.6 109.1 78.3 REMARK 620 6 HOH A 902 O 152.6 160.0 97.3 58.8 73.4 REMARK 620 7 HOH A 903 O 68.9 94.6 110.8 132.6 140.1 99.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SM A 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TEB RELATED DB: PDB REMARK 900 RELATED ID: 1TE8 RELATED DB: PDB REMARK 900 RELATED ID: 1TE9 RELATED DB: PDB REMARK 900 RELATED ID: 1XR6 RELATED DB: PDB REMARK 900 RELATED ID: 1XR7 RELATED DB: PDB DBREF 1XR5 A 1 460 UNP P03303 POLG_HRV14 1720 2179 SEQADV 1XR5 HIS A 461 UNP P03303 EXPRESSION TAG SEQADV 1XR5 HIS A 462 UNP P03303 EXPRESSION TAG SEQADV 1XR5 HIS A 463 UNP P03303 EXPRESSION TAG SEQADV 1XR5 HIS A 464 UNP P03303 EXPRESSION TAG SEQADV 1XR5 HIS A 465 UNP P03303 EXPRESSION TAG SEQADV 1XR5 HIS A 466 UNP P03303 EXPRESSION TAG SEQRES 1 A 466 GLY GLN VAL ILE ALA ARG HIS LYS VAL ARG GLU PHE ASN SEQRES 2 A 466 ILE ASN PRO VAL ASN THR PRO THR LYS SER LYS LEU HIS SEQRES 3 A 466 PRO SER VAL PHE TYR ASP VAL PHE PRO GLY ASP LYS GLU SEQRES 4 A 466 PRO ALA VAL LEU SER ASP ASN ASP PRO ARG LEU GLU VAL SEQRES 5 A 466 LYS LEU THR GLU SER LEU PHE SER LYS TYR LYS GLY ASN SEQRES 6 A 466 VAL ASN THR GLU PRO THR GLU ASN MET LEU VAL ALA VAL SEQRES 7 A 466 ASP HIS TYR ALA GLY GLN LEU LEU SER LEU ASP ILE PRO SEQRES 8 A 466 THR SER GLU LEU THR LEU LYS GLU ALA LEU TYR GLY VAL SEQRES 9 A 466 ASP GLY LEU GLU PRO ILE ASP ILE THR THR SER ALA GLY SEQRES 10 A 466 PHE PRO TYR VAL SER LEU GLY ILE LYS LYS ARG ASP ILE SEQRES 11 A 466 LEU ASN LYS GLU THR GLN ASP THR GLU LYS MET LYS PHE SEQRES 12 A 466 TYR LEU ASP LYS TYR GLY ILE ASP LEU PRO LEU VAL THR SEQRES 13 A 466 TYR ILE LYS ASP GLU LEU ARG SER VAL ASP LYS VAL ARG SEQRES 14 A 466 LEU GLY LYS SER ARG LEU ILE GLU ALA SER SER LEU ASN SEQRES 15 A 466 ASP SER VAL ASN MET ARG MET LYS LEU GLY ASN LEU TYR SEQRES 16 A 466 LYS ALA PHE HIS GLN ASN PRO GLY VAL LEU THR GLY SER SEQRES 17 A 466 ALA VAL GLY CYS ASP PRO ASP VAL PHE TRP SER VAL ILE SEQRES 18 A 466 PRO CYS LEU MET ASP GLY HIS LEU MET ALA PHE ASP TYR SEQRES 19 A 466 SER ASN PHE ASP ALA SER LEU SER PRO VAL TRP PHE VAL SEQRES 20 A 466 CYS LEU GLU LYS VAL LEU THR LYS LEU GLY PHE ALA GLY SEQRES 21 A 466 SER SER LEU ILE GLN SER ILE CYS ASN THR HIS HIS ILE SEQRES 22 A 466 PHE ARG ASP GLU ILE TYR VAL VAL GLU GLY GLY MET PRO SEQRES 23 A 466 SER GLY CYS SER GLY THR SER ILE PHE ASN SER MET ILE SEQRES 24 A 466 ASN ASN ILE ILE ILE ARG THR LEU ILE LEU ASP ALA TYR SEQRES 25 A 466 LYS GLY ILE ASP LEU ASP LYS LEU LYS ILE LEU ALA TYR SEQRES 26 A 466 GLY ASP ASP LEU ILE VAL SER TYR PRO TYR GLU LEU ASP SEQRES 27 A 466 PRO GLN VAL LEU ALA THR LEU GLY LYS ASN TYR GLY LEU SEQRES 28 A 466 THR ILE THR PRO PRO ASP LYS SER GLU THR PHE THR LYS SEQRES 29 A 466 MET THR TRP GLU ASN LEU THR PHE LEU LYS ARG TYR PHE SEQRES 30 A 466 LYS PRO ASP GLN GLN PHE PRO PHE LEU VAL HIS PRO VAL SEQRES 31 A 466 MET PRO MET LYS ASP ILE HIS GLU SER ILE ARG TRP THR SEQRES 32 A 466 LYS ASP PRO LYS ASN THR GLN ASP HIS VAL ARG SER LEU SEQRES 33 A 466 CYS MET LEU ALA TRP HIS SER GLY GLU LYS GLU TYR ASN SEQRES 34 A 466 GLU PHE ILE GLN LYS ILE ARG THR THR ASP ILE GLY LYS SEQRES 35 A 466 CYS LEU ILE LEU PRO GLU TYR SER VAL LEU ARG ARG ARG SEQRES 36 A 466 TRP LEU ASP LEU PHE HIS HIS HIS HIS HIS HIS HET SM A 901 1 HETNAM SM SAMARIUM (III) ION FORMUL 2 SM SM 3+ FORMUL 3 HOH *2(H2 O) HELIX 1 1 LYS A 8 ASN A 13 5 6 HELIX 2 2 VAL A 29 ASP A 32 5 4 HELIX 3 3 LYS A 53 SER A 60 1 8 HELIX 4 4 THR A 71 SER A 87 1 17 HELIX 5 5 THR A 96 GLY A 103 1 8 HELIX 6 6 PRO A 119 GLY A 124 5 6 HELIX 7 7 LYS A 126 LEU A 131 1 6 HELIX 8 8 THR A 138 GLY A 149 1 12 HELIX 9 9 SER A 164 LEU A 170 1 7 HELIX 10 10 SER A 180 ARG A 188 1 9 HELIX 11 11 LEU A 191 ASN A 201 1 11 HELIX 12 12 ASP A 213 TRP A 218 1 6 HELIX 13 13 VAL A 220 MET A 225 1 6 HELIX 14 14 PHE A 237 LEU A 241 5 5 HELIX 15 15 SER A 242 GLY A 257 1 16 HELIX 16 16 SER A 262 ASN A 269 1 8 HELIX 17 17 GLY A 291 TYR A 312 1 22 HELIX 18 18 ASP A 316 LEU A 320 5 5 HELIX 19 19 ASP A 338 LYS A 347 1 10 HELIX 20 20 PRO A 392 ARG A 401 1 10 HELIX 21 21 ASN A 408 TRP A 421 1 14 HELIX 22 22 GLY A 424 ARG A 436 1 13 HELIX 23 23 THR A 438 LEU A 444 1 7 HELIX 24 24 GLU A 448 LEU A 459 1 12 SHEET 1 A 5 GLN A 2 HIS A 7 0 SHEET 2 A 5 ILE A 278 GLU A 282 -1 O GLU A 282 N GLN A 2 SHEET 3 A 5 THR A 270 ILE A 273 -1 N HIS A 272 O TYR A 279 SHEET 4 A 5 LEU A 154 ILE A 158 1 N LEU A 154 O ILE A 273 SHEET 5 A 5 LEU A 175 ALA A 178 -1 O ALA A 178 N VAL A 155 SHEET 1 B 2 HIS A 26 PRO A 27 0 SHEET 2 B 2 TRP A 402 THR A 403 -1 O THR A 403 N HIS A 26 SHEET 1 C 2 GLU A 39 PRO A 40 0 SHEET 2 C 2 LEU A 162 ARG A 163 -1 O ARG A 163 N GLU A 39 SHEET 1 D 4 LYS A 321 TYR A 325 0 SHEET 2 D 4 ASP A 328 SER A 332 -1 O SER A 332 N LYS A 321 SHEET 3 D 4 MET A 230 TYR A 234 -1 N MET A 230 O VAL A 331 SHEET 4 D 4 ILE A 353 THR A 354 -1 O THR A 354 N ASP A 233 SHEET 1 E 2 TYR A 376 PRO A 379 0 SHEET 2 E 2 VAL A 387 VAL A 390 -1 O HIS A 388 N LYS A 378 LINK OD1 ASP A 233 SM SM A 901 1555 1555 2.89 LINK OD2 ASP A 233 SM SM A 901 1555 1555 2.50 LINK OD1 ASP A 327 SM SM A 901 1555 1555 2.50 LINK OD2 ASP A 327 SM SM A 901 1555 1555 3.10 LINK OD2 ASP A 328 SM SM A 901 1555 1555 2.61 LINK SM SM A 901 O HOH A 902 1555 1555 2.62 LINK SM SM A 901 O HOH A 903 1555 1555 3.00 CISPEP 1 PHE A 118 PRO A 119 0 -5.27 SITE 1 AC1 5 ASP A 233 ASP A 327 ASP A 328 HOH A 902 SITE 2 AC1 5 HOH A 903 CRYST1 97.326 97.326 153.113 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010275 0.005932 0.000000 0.00000 SCALE2 0.000000 0.011864 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006531 0.00000