HEADER HYDROLASE INHIBITOR 18-OCT-04 1XS0 TITLE STRUCTURE OF THE E. COLI IVY PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: INHIBITOR OF VERTEBRATE LYSOZYME; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: XL1-BLUE; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE60 KEYWDS ALPHA BETA FOLD, DIMER, HYDROLASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR C.ABERGEL,V.MONCHOIS,D.BYRN,J.C.LAZZARONI,J.M.CLAVERIE REVDAT 5 13-JUL-11 1XS0 1 VERSN REVDAT 4 09-JUN-09 1XS0 1 REVDAT REVDAT 3 24-FEB-09 1XS0 1 VERSN REVDAT 2 20-JAN-09 1XS0 1 JRNL REVDAT 1 02-NOV-04 1XS0 0 JRNL AUTH C.ABERGEL,V.MONCHOIS,D.BYRNE,S.CHENIVESSE,F.LEMBO, JRNL AUTH 2 J.C.LAZZARONI,J.M.CLAVERIE JRNL TITL STRUCTURE AND EVOLUTION OF THE IVY PROTEIN FAMILY, JRNL TITL 2 UNEXPECTED LYSOZYME INHIBITORS IN GRAM-NEGATIVE BACTERIA. JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 6394 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 17405861 JRNL DOI 10.1073/PNAS.0611019104 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH V.MONCHOIS,C.ABERGEL,J.STURGIS,S.JEUDY,J.M.CLAVERIE REMARK 1 TITL ESCHERICHIA COLI YKFE ORFAN GENE ENCODES A POTENT INHIBITOR REMARK 1 TITL 2 OF C-TYPE LYSOZYME REMARK 1 REF J.BIOL.CHEM. V. 276 18437 2001 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 11278658 REMARK 1 DOI 10.1074/JBC.M010297200 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.ABERGEL,V.MONCHOIS,S.CHENIVESSE,S.JEUDY,J.M.CLAVERIE REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY CRYSTALLOGRAPHIC STUDY OF REMARK 1 TITL 2 B0220, AN 'ORFAN' PROTEIN OF UNKNOWN FUNCTION FROM REMARK 1 TITL 3 ESCHERICHIA COLI REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 56 1694 2000 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 11092949 REMARK 1 DOI 10.1107/S0907444900015316 REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 823714.100 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 37575 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4496 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.58 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.68 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6705 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 731 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2942 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 302 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.42000 REMARK 3 B22 (A**2) : 2.01000 REMARK 3 B33 (A**2) : -4.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.14 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.18 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.025 REMARK 3 BOND ANGLES (DEGREES) : 2.20 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.26 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 60.55 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1XS0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-OCT-04. REMARK 100 THE RCSB ID CODE IS RCSB030699. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-00 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : 6.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97917, 0.97941, 0.97393 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44577 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 40.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 9.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03700 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.22300 REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4M SODIUM CITRATE, 8% PEG 8000, 20MM REMARK 280 TRIS, 50MM NACL, PH 6.75, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 40.66950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.48100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 40.66950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.48100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 81.33900 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 240 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 ASP A 2 REMARK 465 HIS A 131 REMARK 465 HIS A 132 REMARK 465 HIS A 133 REMARK 465 HIS A 134 REMARK 465 HIS A 135 REMARK 465 HIS A 136 REMARK 465 THR B 89 REMARK 465 SER B 90 REMARK 465 SER B 130 REMARK 465 HIS B 131 REMARK 465 HIS B 132 REMARK 465 HIS B 133 REMARK 465 HIS B 134 REMARK 465 HIS B 135 REMARK 465 HIS B 136 REMARK 465 GLN C 1 REMARK 465 ASP C 2 REMARK 465 HIS C 132 REMARK 465 HIS C 133 REMARK 465 HIS C 134 REMARK 465 HIS C 135 REMARK 465 HIS C 136 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL C 99 N ASP C 101 1.93 REMARK 500 ND1 HIS A 60 O HOH A 177 2.05 REMARK 500 N GLN B 1 O HOH B 178 2.10 REMARK 500 O ASN B 98 N ASN B 100 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 176 O HOH B 176 2656 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET C 22 SD MET C 22 CE -0.482 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 108 CD - CE - NZ ANGL. DEV. = -14.2 DEGREES REMARK 500 ASP B 2 N - CA - C ANGL. DEV. = 20.2 DEGREES REMARK 500 LEU B 4 CA - CB - CG ANGL. DEV. = -14.3 DEGREES REMARK 500 ASP B 101 N - CA - C ANGL. DEV. = -30.2 DEGREES REMARK 500 MET C 78 CA - CB - CG ANGL. DEV. = 10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 61 51.12 -154.09 REMARK 500 ASN A 98 -66.20 -102.84 REMARK 500 VAL A 99 -13.82 53.95 REMARK 500 PHE A 128 71.67 -119.91 REMARK 500 ASP B 2 13.07 39.29 REMARK 500 ASP B 3 -13.52 -166.60 REMARK 500 LYS B 34 -108.35 -67.91 REMARK 500 ASP B 61 48.90 -153.22 REMARK 500 ASP B 86 -102.37 -85.73 REMARK 500 GLU B 87 34.53 167.18 REMARK 500 ASN B 98 -5.26 79.71 REMARK 500 VAL B 99 4.16 33.36 REMARK 500 ASN B 100 -144.54 91.15 REMARK 500 ASP B 101 -25.70 133.40 REMARK 500 LYS C 34 -111.82 -128.20 REMARK 500 ASP C 61 48.37 -150.88 REMARK 500 ASN C 100 34.09 -49.03 REMARK 500 PHE C 128 69.35 -118.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP B 2 19.1 L L OUTSIDE RANGE REMARK 500 ASP B 101 50.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 213 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A 221 DISTANCE = 5.15 ANGSTROMS REMARK 525 HOH A 228 DISTANCE = 13.54 ANGSTROMS REMARK 525 HOH A 230 DISTANCE = 11.07 ANGSTROMS REMARK 525 HOH A 236 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH B 223 DISTANCE = 5.45 ANGSTROMS REMARK 525 HOH B 225 DISTANCE = 7.84 ANGSTROMS REMARK 525 HOH B 234 DISTANCE = 7.85 ANGSTROMS REMARK 525 HOH B 235 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH B 236 DISTANCE = 5.41 ANGSTROMS REMARK 525 HOH C 204 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH C 219 DISTANCE = 5.09 ANGSTROMS REMARK 525 HOH C 230 DISTANCE = 10.76 ANGSTROMS REMARK 525 HOH C 232 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH C 233 DISTANCE = 5.76 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GPQ RELATED DB: PDB REMARK 900 THE E. COLI IVY PROTEIN COMPLEXED WITH LYSOZYME REMARK 900 RELATED ID: 1HKE RELATED DB: PDB REMARK 900 THE P. AERUGINOSA IVY PROTEIN COMPLEXED WITH LYSOZYME DBREF 1XS0 A 1 128 UNP P45502 IVY_ECOLI 29 156 DBREF 1XS0 B 1 128 UNP P45502 IVY_ECOLI 29 156 DBREF 1XS0 C 1 128 UNP P45502 IVY_ECOLI 29 156 SEQADV 1XS0 ARG A 129 UNP P45502 EXPRESSION TAG SEQADV 1XS0 SER A 130 UNP P45502 EXPRESSION TAG SEQADV 1XS0 HIS A 131 UNP P45502 EXPRESSION TAG SEQADV 1XS0 HIS A 132 UNP P45502 EXPRESSION TAG SEQADV 1XS0 HIS A 133 UNP P45502 EXPRESSION TAG SEQADV 1XS0 HIS A 134 UNP P45502 EXPRESSION TAG SEQADV 1XS0 HIS A 135 UNP P45502 EXPRESSION TAG SEQADV 1XS0 HIS A 136 UNP P45502 EXPRESSION TAG SEQADV 1XS0 ARG B 129 UNP P45502 EXPRESSION TAG SEQADV 1XS0 SER B 130 UNP P45502 EXPRESSION TAG SEQADV 1XS0 HIS B 131 UNP P45502 EXPRESSION TAG SEQADV 1XS0 HIS B 132 UNP P45502 EXPRESSION TAG SEQADV 1XS0 HIS B 133 UNP P45502 EXPRESSION TAG SEQADV 1XS0 HIS B 134 UNP P45502 EXPRESSION TAG SEQADV 1XS0 HIS B 135 UNP P45502 EXPRESSION TAG SEQADV 1XS0 HIS B 136 UNP P45502 EXPRESSION TAG SEQADV 1XS0 ARG C 129 UNP P45502 EXPRESSION TAG SEQADV 1XS0 SER C 130 UNP P45502 EXPRESSION TAG SEQADV 1XS0 HIS C 131 UNP P45502 EXPRESSION TAG SEQADV 1XS0 HIS C 132 UNP P45502 EXPRESSION TAG SEQADV 1XS0 HIS C 133 UNP P45502 EXPRESSION TAG SEQADV 1XS0 HIS C 134 UNP P45502 EXPRESSION TAG SEQADV 1XS0 HIS C 135 UNP P45502 EXPRESSION TAG SEQADV 1XS0 HIS C 136 UNP P45502 EXPRESSION TAG SEQRES 1 A 136 GLN ASP ASP LEU THR ILE SER SER LEU ALA LYS GLY GLU SEQRES 2 A 136 THR THR LYS ALA ALA PHE ASN GLN MET VAL GLN GLY HIS SEQRES 3 A 136 LYS LEU PRO ALA TRP VAL MET LYS GLY GLY THR TYR THR SEQRES 4 A 136 PRO ALA GLN THR VAL THR LEU GLY ASP GLU THR TYR GLN SEQRES 5 A 136 VAL MET SER ALA CYS LYS PRO HIS ASP CYS GLY SER GLN SEQRES 6 A 136 ARG ILE ALA VAL MET TRP SER GLU LYS SER ASN GLN MET SEQRES 7 A 136 THR GLY LEU PHE SER THR ILE ASP GLU LYS THR SER GLN SEQRES 8 A 136 GLU LYS LEU THR TRP LEU ASN VAL ASN ASP ALA LEU SER SEQRES 9 A 136 ILE ASP GLY LYS THR VAL LEU PHE ALA ALA LEU THR GLY SEQRES 10 A 136 SER LEU GLU ASN HIS PRO ASP GLY PHE ASN PHE ARG SER SEQRES 11 A 136 HIS HIS HIS HIS HIS HIS SEQRES 1 B 136 GLN ASP ASP LEU THR ILE SER SER LEU ALA LYS GLY GLU SEQRES 2 B 136 THR THR LYS ALA ALA PHE ASN GLN MET VAL GLN GLY HIS SEQRES 3 B 136 LYS LEU PRO ALA TRP VAL MET LYS GLY GLY THR TYR THR SEQRES 4 B 136 PRO ALA GLN THR VAL THR LEU GLY ASP GLU THR TYR GLN SEQRES 5 B 136 VAL MET SER ALA CYS LYS PRO HIS ASP CYS GLY SER GLN SEQRES 6 B 136 ARG ILE ALA VAL MET TRP SER GLU LYS SER ASN GLN MET SEQRES 7 B 136 THR GLY LEU PHE SER THR ILE ASP GLU LYS THR SER GLN SEQRES 8 B 136 GLU LYS LEU THR TRP LEU ASN VAL ASN ASP ALA LEU SER SEQRES 9 B 136 ILE ASP GLY LYS THR VAL LEU PHE ALA ALA LEU THR GLY SEQRES 10 B 136 SER LEU GLU ASN HIS PRO ASP GLY PHE ASN PHE ARG SER SEQRES 11 B 136 HIS HIS HIS HIS HIS HIS SEQRES 1 C 136 GLN ASP ASP LEU THR ILE SER SER LEU ALA LYS GLY GLU SEQRES 2 C 136 THR THR LYS ALA ALA PHE ASN GLN MET VAL GLN GLY HIS SEQRES 3 C 136 LYS LEU PRO ALA TRP VAL MET LYS GLY GLY THR TYR THR SEQRES 4 C 136 PRO ALA GLN THR VAL THR LEU GLY ASP GLU THR TYR GLN SEQRES 5 C 136 VAL MET SER ALA CYS LYS PRO HIS ASP CYS GLY SER GLN SEQRES 6 C 136 ARG ILE ALA VAL MET TRP SER GLU LYS SER ASN GLN MET SEQRES 7 C 136 THR GLY LEU PHE SER THR ILE ASP GLU LYS THR SER GLN SEQRES 8 C 136 GLU LYS LEU THR TRP LEU ASN VAL ASN ASP ALA LEU SER SEQRES 9 C 136 ILE ASP GLY LYS THR VAL LEU PHE ALA ALA LEU THR GLY SEQRES 10 C 136 SER LEU GLU ASN HIS PRO ASP GLY PHE ASN PHE ARG SER SEQRES 11 C 136 HIS HIS HIS HIS HIS HIS FORMUL 4 HOH *302(H2 O) HELIX 1 1 THR A 5 GLY A 12 1 8 HELIX 2 2 THR A 15 GLN A 24 1 10 HELIX 3 3 ALA A 30 GLY A 35 1 6 HELIX 4 4 SER A 104 GLY A 117 1 14 HELIX 5 5 GLY A 117 HIS A 122 1 6 HELIX 6 6 THR B 5 GLY B 12 1 8 HELIX 7 7 THR B 15 VAL B 23 1 9 HELIX 8 8 SER B 104 GLY B 117 1 14 HELIX 9 9 GLY B 117 HIS B 122 1 6 HELIX 10 10 THR C 5 GLY C 12 1 8 HELIX 11 11 THR C 15 VAL C 23 1 9 HELIX 12 12 SER C 104 GLY C 117 1 14 HELIX 13 13 GLY C 117 HIS C 122 1 6 SHEET 1 A 6 GLU A 92 LEU A 97 0 SHEET 2 A 6 MET A 78 ILE A 85 -1 N THR A 84 O LYS A 93 SHEET 3 A 6 GLN A 65 TRP A 71 -1 N MET A 70 O THR A 79 SHEET 4 A 6 GLU A 49 CYS A 57 -1 N GLN A 52 O TRP A 71 SHEET 5 A 6 THR A 37 GLY A 47 -1 N GLN A 42 O VAL A 53 SHEET 6 A 6 PHE A 128 ARG A 129 1 O PHE A 128 N GLY A 47 SHEET 1 B11 THR B 37 LEU B 46 0 SHEET 2 B11 GLU B 49 CYS B 57 -1 O VAL B 53 N GLN B 42 SHEET 3 B11 GLN B 65 TRP B 71 -1 O TRP B 71 N GLN B 52 SHEET 4 B11 MET B 78 ILE B 85 -1 O SER B 83 N ARG B 66 SHEET 5 B11 GLU B 92 LEU B 97 -1 O LEU B 97 N GLY B 80 SHEET 6 B11 GLU C 92 LEU C 97 -1 O GLU C 92 N LEU B 94 SHEET 7 B11 MET C 78 ILE C 85 -1 N THR C 84 O LYS C 93 SHEET 8 B11 GLN C 65 TRP C 71 -1 N ARG C 66 O SER C 83 SHEET 9 B11 GLU C 49 CYS C 57 -1 N GLN C 52 O TRP C 71 SHEET 10 B11 THR C 37 GLY C 47 -1 N GLN C 42 O VAL C 53 SHEET 11 B11 PHE C 128 ARG C 129 1 O PHE C 128 N GLY C 47 SSBOND 1 CYS A 57 CYS A 62 1555 1555 2.02 SSBOND 2 CYS B 57 CYS B 62 1555 1555 2.02 SSBOND 3 CYS C 57 CYS C 62 1555 1555 2.01 CRYST1 81.339 46.962 88.044 90.00 89.95 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012294 0.000000 -0.000011 0.00000 SCALE2 0.000000 0.021294 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011358 0.00000