data_1XSD # _entry.id 1XSD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1XSD pdb_00001xsd 10.2210/pdb1xsd/pdb NDB PD0598 ? ? RCSB RCSB030712 ? ? WWPDB D_1000030712 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1sd4 _pdbx_database_related.details 'unbound form of BlaI' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1XSD _pdbx_database_status.recvd_initial_deposition_date 2004-10-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Safo, M.K.' 1 'Ko, T.-P.' 2 'Musayev, F.N.' 3 'Zhao, Q.' 4 'Robinson, H.' 5 'Scarsdale, N.' 6 'Wang, A.H.-J.' 7 'Archer, G.L.' 8 # _citation.id primary _citation.title ;Crystal structures of the BlaI repressor from Staphylococcus aureus and its complex with DNA: insights into transcriptional regulation of the bla and mec operons ; _citation.journal_abbrev J.Bacteriol. _citation.journal_volume 187 _citation.page_first 1833 _citation.page_last 1844 _citation.year 2005 _citation.journal_id_ASTM JOBAAY _citation.country US _citation.journal_id_ISSN 0021-9193 _citation.journal_id_CSD 0767 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15716455 _citation.pdbx_database_id_DOI 10.1128/JB.187.5.1833-1844.2005 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Safo, M.K.' 1 ? primary 'Zhao, Q.' 2 ? primary 'Ko, T.-P.' 3 ? primary 'Musayev, F.N.' 4 ? primary 'Robinson, H.' 5 ? primary 'Scarsdale, N.' 6 ? primary 'Wang, A.H.-J.' 7 ? primary 'Archer, G.L.' 8 ? # _cell.entry_id 1XSD _cell.length_a 72.141 _cell.length_b 72.141 _cell.length_c 243.472 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XSD _symmetry.space_group_name_H-M 'I 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(P*TP*AP*CP*TP*AP*CP*AP*TP*AP*TP*GP*TP*AP*GP*TP*A)-3'" 4896.216 1 ? ? ? ? 2 polymer man 'penicillinase repressor' 14988.363 1 ? ? ? ? 3 water nat water 18.015 181 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'mec operator DNA' 2 'beta-lactamase repressor' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DA)(DC)(DT)(DA)(DC)(DA)(DT)(DA)(DT)(DG)(DT)(DA)(DG)(DT)(DA)' TACTACATATGTAGTA B ? 2 'polypeptide(L)' no no ;MTNKQVEISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENIYFYSSNIKEDDIKM KTAKTFLNKLYGGDMKSLVLNFAKNEELNNKEIEELRDILNDISKK ; ;MTNKQVEISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENIYFYSSNIKEDDIKM KTAKTFLNKLYGGDMKSLVLNFAKNEELNNKEIEELRDILNDISKK ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DA n 1 3 DC n 1 4 DT n 1 5 DA n 1 6 DC n 1 7 DA n 1 8 DT n 1 9 DA n 1 10 DT n 1 11 DG n 1 12 DT n 1 13 DA n 1 14 DG n 1 15 DT n 1 16 DA n 2 1 MET n 2 2 THR n 2 3 ASN n 2 4 LYS n 2 5 GLN n 2 6 VAL n 2 7 GLU n 2 8 ILE n 2 9 SER n 2 10 MET n 2 11 ALA n 2 12 GLU n 2 13 TRP n 2 14 ASP n 2 15 VAL n 2 16 MET n 2 17 ASN n 2 18 ILE n 2 19 ILE n 2 20 TRP n 2 21 ASP n 2 22 LYS n 2 23 LYS n 2 24 SER n 2 25 VAL n 2 26 SER n 2 27 ALA n 2 28 ASN n 2 29 GLU n 2 30 ILE n 2 31 VAL n 2 32 VAL n 2 33 GLU n 2 34 ILE n 2 35 GLN n 2 36 LYS n 2 37 TYR n 2 38 LYS n 2 39 GLU n 2 40 VAL n 2 41 SER n 2 42 ASP n 2 43 LYS n 2 44 THR n 2 45 ILE n 2 46 ARG n 2 47 THR n 2 48 LEU n 2 49 ILE n 2 50 THR n 2 51 ARG n 2 52 LEU n 2 53 TYR n 2 54 LYS n 2 55 LYS n 2 56 GLU n 2 57 ILE n 2 58 ILE n 2 59 LYS n 2 60 ARG n 2 61 TYR n 2 62 LYS n 2 63 SER n 2 64 GLU n 2 65 ASN n 2 66 ILE n 2 67 TYR n 2 68 PHE n 2 69 TYR n 2 70 SER n 2 71 SER n 2 72 ASN n 2 73 ILE n 2 74 LYS n 2 75 GLU n 2 76 ASP n 2 77 ASP n 2 78 ILE n 2 79 LYS n 2 80 MET n 2 81 LYS n 2 82 THR n 2 83 ALA n 2 84 LYS n 2 85 THR n 2 86 PHE n 2 87 LEU n 2 88 ASN n 2 89 LYS n 2 90 LEU n 2 91 TYR n 2 92 GLY n 2 93 GLY n 2 94 ASP n 2 95 MET n 2 96 LYS n 2 97 SER n 2 98 LEU n 2 99 VAL n 2 100 LEU n 2 101 ASN n 2 102 PHE n 2 103 ALA n 2 104 LYS n 2 105 ASN n 2 106 GLU n 2 107 GLU n 2 108 LEU n 2 109 ASN n 2 110 ASN n 2 111 LYS n 2 112 GLU n 2 113 ILE n 2 114 GLU n 2 115 GLU n 2 116 LEU n 2 117 ARG n 2 118 ASP n 2 119 ILE n 2 120 LEU n 2 121 ASN n 2 122 ASP n 2 123 ILE n 2 124 SER n 2 125 LYS n 2 126 LYS n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Staphylococcus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1280 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'B834 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET3 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q6UB84_STAAU Q6UB84 2 ;MTNKQVEISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENIYFYSSNIKEDDIKM KTAKTFLNKLYGGDMKSLVLNFAKNEELNNKEIEELRDILNDISKK ; 1 ? 2 PDB 1XSD 1XSD 1 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1XSD A 1 ? 126 ? Q6UB84 1 ? 126 ? 1 126 2 2 1XSD B 1 ? 16 ? 1XSD 201 ? 216 ? 201 216 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1XSD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.3 _exptl_crystal.density_percent_sol 71.5 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details ;PEG 8000, ethylene glycol, magnesium chloride, sodium HEPES, potasssium phosphate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type CUSTOM-MADE _diffrn_detector.pdbx_collection_date 2004-02-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'CHANNEL-CUT SI CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.1000 # _reflns.entry_id 1XSD _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 2.7 _reflns.d_resolution_low 30 _reflns.number_all 9291 _reflns.number_obs 9285 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.065 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 44.0 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 13.7 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.7 _reflns_shell.d_res_low 2.8 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs 0.546 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.5 _reflns_shell.pdbx_redundancy 11.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 901 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1XSD _refine.ls_d_res_high 2.7 _refine.ls_d_res_low 30 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 9291 _refine.ls_number_reflns_obs 9023 _refine.ls_number_reflns_R_free 496 _refine.ls_percent_reflns_obs 97.1 _refine.ls_R_factor_all 0.238 _refine.ls_R_factor_obs 0.237 _refine.ls_R_factor_R_work 0.23 _refine.ls_R_factor_R_free 0.282 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB entry 1OKR' _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ;The 16 nucleotide DNA model in this structure represents an average of the 32 base-pair DNA used in crystallization. (Used the 32 base-pair DNA of 5'-GACTACATTTGTAGTATATTACAAATGTAGTA-3' and 5'-TACTACATTTGTAATATACTACAAATGTAGTC-3') It contains phosphate groups at both 5' and 3' ends. There are a number of wide solvent channels in this crystal. In the void volume between the protein-DNA complex molecules some spiral densities are modeled as strings of water molecules. These are possibly a result of residuals of the averaged model of the DNA. It is also possible that this void volume may host some DNA molecules with low occupancies. ; _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1XSD _refine_analyze.Luzzati_coordinate_error_obs 0.39 _refine_analyze.Luzzati_sigma_a_obs 0.44 _refine_analyze.Luzzati_d_res_low_obs 5.0 _refine_analyze.Luzzati_coordinate_error_free 0.54 _refine_analyze.Luzzati_sigma_a_free 0.51 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1042 _refine_hist.pdbx_number_atoms_nucleic_acid 328 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 181 _refine_hist.number_atoms_total 1551 _refine_hist.d_res_high 2.7 _refine_hist.d_res_low 30 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.016 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.7 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.7 _refine_ls_shell.d_res_low 2.8 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.405 _refine_ls_shell.percent_reflns_obs 91 _refine_ls_shell.R_factor_R_free 0.528 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 34 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 1XSD _struct.title 'Crystal structure of the BlaI repressor in complex with DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1XSD _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'winged helix protein, TRANSCRIPTION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details 'the second part of the dimer is generated by the two-fold symmetry operator of (-x, -y, z)' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU B 12 ? LYS B 23 ? GLU A 12 LYS A 23 1 ? 12 HELX_P HELX_P2 2 ALA B 27 ? LYS B 36 ? ALA A 27 LYS A 36 1 ? 10 HELX_P HELX_P3 3 SER B 41 ? LYS B 55 ? SER A 41 LYS A 55 1 ? 15 HELX_P HELX_P4 4 LYS B 74 ? GLY B 92 ? LYS A 74 GLY A 92 1 ? 19 HELX_P HELX_P5 5 ASP B 94 ? ASN B 105 ? ASP A 94 ASN A 105 1 ? 12 HELX_P HELX_P6 6 ASN B 109 ? LYS B 125 ? ASN A 109 LYS A 125 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 A DA 16 N1 ? ? B DT 201 B DA 216 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 A DA 16 N6 ? ? B DT 201 B DA 216 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DA 2 N1 ? ? ? 1_555 A DT 15 N3 ? ? B DA 202 B DT 215 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N6 ? ? ? 1_555 A DT 15 O4 ? ? B DA 202 B DT 215 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 3 N3 ? ? ? 1_555 A DG 14 N1 ? ? B DC 203 B DG 214 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 N4 ? ? ? 1_555 A DG 14 O6 ? ? B DC 203 B DG 214 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 O2 ? ? ? 1_555 A DG 14 N2 ? ? B DC 203 B DG 214 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 13 N1 ? ? B DT 204 B DA 213 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 13 N6 ? ? B DT 204 B DA 213 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A DT 12 N3 ? ? B DA 205 B DT 212 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT 12 O4 ? ? B DA 205 B DT 212 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 11 N1 ? ? B DC 206 B DG 211 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 11 O6 ? ? B DC 206 B DG 211 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 11 N2 ? ? B DC 206 B DG 211 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 7 N1 ? ? ? 1_555 A DT 10 N3 ? ? B DA 207 B DT 210 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A DT 10 O4 ? ? B DA 207 B DT 210 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 8 N3 ? ? ? 1_555 A DA 9 N1 ? ? B DT 208 B DA 209 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 8 O4 ? ? ? 1_555 A DA 9 N6 ? ? B DT 208 B DA 209 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 9 N1 ? ? ? 1_555 A DT 8 N3 ? ? B DA 209 B DT 208 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 9 N6 ? ? ? 1_555 A DT 8 O4 ? ? B DA 209 B DT 208 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 10 N3 ? ? ? 1_555 A DA 7 N1 ? ? B DT 210 B DA 207 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 10 O4 ? ? ? 1_555 A DA 7 N6 ? ? B DT 210 B DA 207 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 11 N1 ? ? ? 1_555 A DC 6 N3 ? ? B DG 211 B DC 206 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 11 N2 ? ? ? 1_555 A DC 6 O2 ? ? B DG 211 B DC 206 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 11 O6 ? ? ? 1_555 A DC 6 N4 ? ? B DG 211 B DC 206 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 12 N3 ? ? ? 1_555 A DA 5 N1 ? ? B DT 212 B DA 205 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DT 12 O4 ? ? ? 1_555 A DA 5 N6 ? ? B DT 212 B DA 205 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DA 13 N1 ? ? ? 1_555 A DT 4 N3 ? ? B DA 213 B DT 204 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DA 13 N6 ? ? ? 1_555 A DT 4 O4 ? ? B DA 213 B DT 204 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 14 N1 ? ? ? 1_555 A DC 3 N3 ? ? B DG 214 B DC 203 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 14 N2 ? ? ? 1_555 A DC 3 O2 ? ? B DG 214 B DC 203 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 14 O6 ? ? ? 1_555 A DC 3 N4 ? ? B DG 214 B DC 203 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DT 15 N3 ? ? ? 1_555 A DA 2 N1 ? ? B DT 215 B DA 202 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DT 15 O4 ? ? ? 1_555 A DA 2 N6 ? ? B DT 215 B DA 202 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DA 16 N1 ? ? ? 1_555 A DT 1 N3 ? ? B DA 216 B DT 201 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DA 16 N6 ? ? ? 1_555 A DT 1 O4 ? ? B DA 216 B DT 201 10_444 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL B 25 ? SER B 26 ? VAL A 25 SER A 26 A 2 TYR B 67 ? SER B 71 ? TYR A 67 SER A 71 A 3 ILE B 58 ? LYS B 62 ? ILE A 58 LYS A 62 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL B 25 ? N VAL A 25 O TYR B 69 ? O TYR A 69 A 2 3 O SER B 70 ? O SER A 70 N LYS B 59 ? N LYS A 59 # _database_PDB_matrix.entry_id 1XSD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1XSD _atom_sites.fract_transf_matrix[1][1] 0.013862 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013862 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004107 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 201 201 DT THY B . n A 1 2 DA 2 202 202 DA ADE B . n A 1 3 DC 3 203 203 DC CYT B . n A 1 4 DT 4 204 204 DT THY B . n A 1 5 DA 5 205 205 DA ADE B . n A 1 6 DC 6 206 206 DC CYT B . n A 1 7 DA 7 207 207 DA ADE B . n A 1 8 DT 8 208 208 DT THY B . n A 1 9 DA 9 209 209 DA ADE B . n A 1 10 DT 10 210 210 DT THY B . n A 1 11 DG 11 211 211 DG GUA B . n A 1 12 DT 12 212 212 DT THY B . n A 1 13 DA 13 213 213 DA ADE B . n A 1 14 DG 14 214 214 DG GUA B . n A 1 15 DT 15 215 215 DT THY B . n A 1 16 DA 16 216 216 DA ADE B . n B 2 1 MET 1 1 ? ? ? A . n B 2 2 THR 2 2 2 THR THR A . n B 2 3 ASN 3 3 3 ASN ASN A . n B 2 4 LYS 4 4 4 LYS LYS A . n B 2 5 GLN 5 5 5 GLN GLN A . n B 2 6 VAL 6 6 6 VAL VAL A . n B 2 7 GLU 7 7 7 GLU GLU A . n B 2 8 ILE 8 8 8 ILE ILE A . n B 2 9 SER 9 9 9 SER SER A . n B 2 10 MET 10 10 10 MET MET A . n B 2 11 ALA 11 11 11 ALA ALA A . n B 2 12 GLU 12 12 12 GLU GLU A . n B 2 13 TRP 13 13 13 TRP TRP A . n B 2 14 ASP 14 14 14 ASP ASP A . n B 2 15 VAL 15 15 15 VAL VAL A . n B 2 16 MET 16 16 16 MET MET A . n B 2 17 ASN 17 17 17 ASN ASN A . n B 2 18 ILE 18 18 18 ILE ILE A . n B 2 19 ILE 19 19 19 ILE ILE A . n B 2 20 TRP 20 20 20 TRP TRP A . n B 2 21 ASP 21 21 21 ASP ASP A . n B 2 22 LYS 22 22 22 LYS LYS A . n B 2 23 LYS 23 23 23 LYS LYS A . n B 2 24 SER 24 24 24 SER SER A . n B 2 25 VAL 25 25 25 VAL VAL A . n B 2 26 SER 26 26 26 SER SER A . n B 2 27 ALA 27 27 27 ALA ALA A . n B 2 28 ASN 28 28 28 ASN ASN A . n B 2 29 GLU 29 29 29 GLU GLU A . n B 2 30 ILE 30 30 30 ILE ILE A . n B 2 31 VAL 31 31 31 VAL VAL A . n B 2 32 VAL 32 32 32 VAL VAL A . n B 2 33 GLU 33 33 33 GLU GLU A . n B 2 34 ILE 34 34 34 ILE ILE A . n B 2 35 GLN 35 35 35 GLN GLN A . n B 2 36 LYS 36 36 36 LYS LYS A . n B 2 37 TYR 37 37 37 TYR TYR A . n B 2 38 LYS 38 38 38 LYS LYS A . n B 2 39 GLU 39 39 39 GLU GLU A . n B 2 40 VAL 40 40 40 VAL VAL A . n B 2 41 SER 41 41 41 SER SER A . n B 2 42 ASP 42 42 42 ASP ASP A . n B 2 43 LYS 43 43 43 LYS LYS A . n B 2 44 THR 44 44 44 THR THR A . n B 2 45 ILE 45 45 45 ILE ILE A . n B 2 46 ARG 46 46 46 ARG ARG A . n B 2 47 THR 47 47 47 THR THR A . n B 2 48 LEU 48 48 48 LEU LEU A . n B 2 49 ILE 49 49 49 ILE ILE A . n B 2 50 THR 50 50 50 THR THR A . n B 2 51 ARG 51 51 51 ARG ARG A . n B 2 52 LEU 52 52 52 LEU LEU A . n B 2 53 TYR 53 53 53 TYR TYR A . n B 2 54 LYS 54 54 54 LYS LYS A . n B 2 55 LYS 55 55 55 LYS LYS A . n B 2 56 GLU 56 56 56 GLU GLU A . n B 2 57 ILE 57 57 57 ILE ILE A . n B 2 58 ILE 58 58 58 ILE ILE A . n B 2 59 LYS 59 59 59 LYS LYS A . n B 2 60 ARG 60 60 60 ARG ARG A . n B 2 61 TYR 61 61 61 TYR TYR A . n B 2 62 LYS 62 62 62 LYS LYS A . n B 2 63 SER 63 63 63 SER SER A . n B 2 64 GLU 64 64 64 GLU GLU A . n B 2 65 ASN 65 65 65 ASN ASN A . n B 2 66 ILE 66 66 66 ILE ILE A . n B 2 67 TYR 67 67 67 TYR TYR A . n B 2 68 PHE 68 68 68 PHE PHE A . n B 2 69 TYR 69 69 69 TYR TYR A . n B 2 70 SER 70 70 70 SER SER A . n B 2 71 SER 71 71 71 SER SER A . n B 2 72 ASN 72 72 72 ASN ASN A . n B 2 73 ILE 73 73 73 ILE ILE A . n B 2 74 LYS 74 74 74 LYS LYS A . n B 2 75 GLU 75 75 75 GLU GLU A . n B 2 76 ASP 76 76 76 ASP ASP A . n B 2 77 ASP 77 77 77 ASP ASP A . n B 2 78 ILE 78 78 78 ILE ILE A . n B 2 79 LYS 79 79 79 LYS LYS A . n B 2 80 MET 80 80 80 MET MET A . n B 2 81 LYS 81 81 81 LYS LYS A . n B 2 82 THR 82 82 82 THR THR A . n B 2 83 ALA 83 83 83 ALA ALA A . n B 2 84 LYS 84 84 84 LYS LYS A . n B 2 85 THR 85 85 85 THR THR A . n B 2 86 PHE 86 86 86 PHE PHE A . n B 2 87 LEU 87 87 87 LEU LEU A . n B 2 88 ASN 88 88 88 ASN ASN A . n B 2 89 LYS 89 89 89 LYS LYS A . n B 2 90 LEU 90 90 90 LEU LEU A . n B 2 91 TYR 91 91 91 TYR TYR A . n B 2 92 GLY 92 92 92 GLY GLY A . n B 2 93 GLY 93 93 93 GLY GLY A . n B 2 94 ASP 94 94 94 ASP ASP A . n B 2 95 MET 95 95 95 MET MET A . n B 2 96 LYS 96 96 96 LYS LYS A . n B 2 97 SER 97 97 97 SER SER A . n B 2 98 LEU 98 98 98 LEU LEU A . n B 2 99 VAL 99 99 99 VAL VAL A . n B 2 100 LEU 100 100 100 LEU LEU A . n B 2 101 ASN 101 101 101 ASN ASN A . n B 2 102 PHE 102 102 102 PHE PHE A . n B 2 103 ALA 103 103 103 ALA ALA A . n B 2 104 LYS 104 104 104 LYS LYS A . n B 2 105 ASN 105 105 105 ASN ASN A . n B 2 106 GLU 106 106 106 GLU GLU A . n B 2 107 GLU 107 107 107 GLU GLU A . n B 2 108 LEU 108 108 108 LEU LEU A . n B 2 109 ASN 109 109 109 ASN ASN A . n B 2 110 ASN 110 110 110 ASN ASN A . n B 2 111 LYS 111 111 111 LYS LYS A . n B 2 112 GLU 112 112 112 GLU GLU A . n B 2 113 ILE 113 113 113 ILE ILE A . n B 2 114 GLU 114 114 114 GLU GLU A . n B 2 115 GLU 115 115 115 GLU GLU A . n B 2 116 LEU 116 116 116 LEU LEU A . n B 2 117 ARG 117 117 117 ARG ARG A . n B 2 118 ASP 118 118 118 ASP ASP A . n B 2 119 ILE 119 119 119 ILE ILE A . n B 2 120 LEU 120 120 120 LEU LEU A . n B 2 121 ASN 121 121 121 ASN ASN A . n B 2 122 ASP 122 122 122 ASP ASP A . n B 2 123 ILE 123 123 123 ILE ILE A . n B 2 124 SER 124 124 124 SER SER A . n B 2 125 LYS 125 125 125 LYS LYS A . n B 2 126 LYS 126 126 126 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 302 302 HOH TIP B . C 3 HOH 2 305 305 HOH TIP B . C 3 HOH 3 306 306 HOH TIP B . C 3 HOH 4 319 319 HOH TIP B . C 3 HOH 5 320 320 HOH TIP B . C 3 HOH 6 321 321 HOH TIP B . C 3 HOH 7 322 322 HOH TIP B . C 3 HOH 8 323 323 HOH TIP B . C 3 HOH 9 350 350 HOH TIP B . C 3 HOH 10 367 367 HOH TIP B . C 3 HOH 11 370 370 HOH TIP B . C 3 HOH 12 371 371 HOH TIP B . C 3 HOH 13 372 372 HOH TIP B . C 3 HOH 14 377 377 HOH TIP B . C 3 HOH 15 387 387 HOH TIP B . C 3 HOH 16 409 409 HOH TIP B . C 3 HOH 17 417 417 HOH TIP B . C 3 HOH 18 418 418 HOH TIP B . C 3 HOH 19 421 421 HOH TIP B . C 3 HOH 20 422 422 HOH TIP B . C 3 HOH 21 431 431 HOH TIP B . C 3 HOH 22 436 436 HOH TIP B . C 3 HOH 23 439 439 HOH TIP B . C 3 HOH 24 449 449 HOH TIP B . C 3 HOH 25 450 450 HOH TIP B . C 3 HOH 26 452 452 HOH TIP B . C 3 HOH 27 461 461 HOH TIP B . C 3 HOH 28 466 466 HOH TIP B . C 3 HOH 29 474 474 HOH TIP B . D 3 HOH 1 301 301 HOH TIP A . D 3 HOH 2 303 303 HOH TIP A . D 3 HOH 3 304 304 HOH TIP A . D 3 HOH 4 307 307 HOH TIP A . D 3 HOH 5 308 308 HOH TIP A . D 3 HOH 6 309 309 HOH TIP A . D 3 HOH 7 310 310 HOH TIP A . D 3 HOH 8 311 311 HOH TIP A . D 3 HOH 9 312 312 HOH TIP A . D 3 HOH 10 313 313 HOH TIP A . D 3 HOH 11 314 314 HOH TIP A . D 3 HOH 12 315 315 HOH TIP A . D 3 HOH 13 316 316 HOH TIP A . D 3 HOH 14 317 317 HOH TIP A . D 3 HOH 15 318 318 HOH TIP A . D 3 HOH 16 324 324 HOH TIP A . D 3 HOH 17 325 325 HOH TIP A . D 3 HOH 18 326 326 HOH TIP A . D 3 HOH 19 327 327 HOH TIP A . D 3 HOH 20 328 328 HOH TIP A . D 3 HOH 21 329 329 HOH TIP A . D 3 HOH 22 330 330 HOH TIP A . D 3 HOH 23 331 331 HOH TIP A . D 3 HOH 24 332 332 HOH TIP A . D 3 HOH 25 333 333 HOH TIP A . D 3 HOH 26 334 334 HOH TIP A . D 3 HOH 27 335 335 HOH TIP A . D 3 HOH 28 336 336 HOH TIP A . D 3 HOH 29 337 337 HOH TIP A . D 3 HOH 30 338 338 HOH TIP A . D 3 HOH 31 339 339 HOH TIP A . D 3 HOH 32 340 340 HOH TIP A . D 3 HOH 33 341 341 HOH TIP A . D 3 HOH 34 342 342 HOH TIP A . D 3 HOH 35 343 343 HOH TIP A . D 3 HOH 36 344 344 HOH TIP A . D 3 HOH 37 345 345 HOH TIP A . D 3 HOH 38 346 346 HOH TIP A . D 3 HOH 39 347 347 HOH TIP A . D 3 HOH 40 348 348 HOH TIP A . D 3 HOH 41 349 349 HOH TIP A . D 3 HOH 42 351 351 HOH TIP A . D 3 HOH 43 352 352 HOH TIP A . D 3 HOH 44 353 353 HOH TIP A . D 3 HOH 45 354 354 HOH TIP A . D 3 HOH 46 355 355 HOH TIP A . D 3 HOH 47 356 356 HOH TIP A . D 3 HOH 48 357 357 HOH TIP A . D 3 HOH 49 358 358 HOH TIP A . D 3 HOH 50 359 359 HOH TIP A . D 3 HOH 51 360 360 HOH TIP A . D 3 HOH 52 361 361 HOH TIP A . D 3 HOH 53 362 362 HOH TIP A . D 3 HOH 54 363 363 HOH TIP A . D 3 HOH 55 364 364 HOH TIP A . D 3 HOH 56 365 365 HOH TIP A . D 3 HOH 57 366 366 HOH TIP A . D 3 HOH 58 368 368 HOH TIP A . D 3 HOH 59 369 369 HOH TIP A . D 3 HOH 60 373 373 HOH TIP A . D 3 HOH 61 374 374 HOH TIP A . D 3 HOH 62 375 375 HOH TIP A . D 3 HOH 63 376 376 HOH TIP A . D 3 HOH 64 378 378 HOH TIP A . D 3 HOH 65 379 379 HOH TIP A . D 3 HOH 66 380 380 HOH TIP A . D 3 HOH 67 381 381 HOH TIP A . D 3 HOH 68 382 382 HOH TIP A . D 3 HOH 69 383 383 HOH TIP A . D 3 HOH 70 384 384 HOH TIP A . D 3 HOH 71 385 385 HOH TIP A . D 3 HOH 72 386 386 HOH TIP A . D 3 HOH 73 388 388 HOH TIP A . D 3 HOH 74 389 389 HOH TIP A . D 3 HOH 75 390 390 HOH TIP A . D 3 HOH 76 391 391 HOH TIP A . D 3 HOH 77 392 392 HOH TIP A . D 3 HOH 78 393 393 HOH TIP A . D 3 HOH 79 394 394 HOH TIP A . D 3 HOH 80 395 395 HOH TIP A . D 3 HOH 81 396 396 HOH TIP A . D 3 HOH 82 397 397 HOH TIP A . D 3 HOH 83 398 398 HOH TIP A . D 3 HOH 84 399 399 HOH TIP A . D 3 HOH 85 400 400 HOH TIP A . D 3 HOH 86 401 401 HOH TIP A . D 3 HOH 87 402 402 HOH TIP A . D 3 HOH 88 403 403 HOH TIP A . D 3 HOH 89 404 404 HOH TIP A . D 3 HOH 90 405 405 HOH TIP A . D 3 HOH 91 406 406 HOH TIP A . D 3 HOH 92 407 407 HOH TIP A . D 3 HOH 93 408 408 HOH TIP A . D 3 HOH 94 410 410 HOH TIP A . D 3 HOH 95 411 411 HOH TIP A . D 3 HOH 96 412 412 HOH TIP A . D 3 HOH 97 413 413 HOH TIP A . D 3 HOH 98 414 414 HOH TIP A . D 3 HOH 99 415 415 HOH TIP A . D 3 HOH 100 416 416 HOH TIP A . D 3 HOH 101 419 419 HOH TIP A . D 3 HOH 102 420 420 HOH TIP A . D 3 HOH 103 423 423 HOH TIP A . D 3 HOH 104 424 424 HOH TIP A . D 3 HOH 105 425 425 HOH TIP A . D 3 HOH 106 426 426 HOH TIP A . D 3 HOH 107 427 427 HOH TIP A . D 3 HOH 108 428 428 HOH TIP A . D 3 HOH 109 429 429 HOH TIP A . D 3 HOH 110 430 430 HOH TIP A . D 3 HOH 111 432 432 HOH TIP A . D 3 HOH 112 433 433 HOH TIP A . D 3 HOH 113 434 434 HOH TIP A . D 3 HOH 114 435 435 HOH TIP A . D 3 HOH 115 437 437 HOH TIP A . D 3 HOH 116 438 438 HOH TIP A . D 3 HOH 117 440 440 HOH TIP A . D 3 HOH 118 441 441 HOH TIP A . D 3 HOH 119 442 442 HOH TIP A . D 3 HOH 120 443 443 HOH TIP A . D 3 HOH 121 444 444 HOH TIP A . D 3 HOH 122 445 445 HOH TIP A . D 3 HOH 123 446 446 HOH TIP A . D 3 HOH 124 447 447 HOH TIP A . D 3 HOH 125 448 448 HOH TIP A . D 3 HOH 126 451 451 HOH TIP A . D 3 HOH 127 453 453 HOH TIP A . D 3 HOH 128 454 454 HOH TIP A . D 3 HOH 129 455 455 HOH TIP A . D 3 HOH 130 456 456 HOH TIP A . D 3 HOH 131 457 457 HOH TIP A . D 3 HOH 132 458 458 HOH TIP A . D 3 HOH 133 459 459 HOH TIP A . D 3 HOH 134 460 460 HOH TIP A . D 3 HOH 135 462 462 HOH TIP A . D 3 HOH 136 463 463 HOH TIP A . D 3 HOH 137 464 464 HOH TIP A . D 3 HOH 138 465 465 HOH TIP A . D 3 HOH 139 467 467 HOH TIP A . D 3 HOH 140 468 468 HOH TIP A . D 3 HOH 141 469 469 HOH TIP A . D 3 HOH 142 470 470 HOH TIP A . D 3 HOH 143 471 471 HOH TIP A . D 3 HOH 144 472 472 HOH TIP A . D 3 HOH 145 473 473 HOH TIP A . D 3 HOH 146 475 475 HOH TIP A . D 3 HOH 147 476 476 HOH TIP A . D 3 HOH 148 477 477 HOH TIP A . D 3 HOH 149 478 478 HOH TIP A . D 3 HOH 150 479 479 HOH TIP A . D 3 HOH 151 480 480 HOH TIP A . D 3 HOH 152 481 481 HOH TIP A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 B HOH 302 ? C HOH . 2 1 B HOH 305 ? C HOH . 3 1 A HOH 301 ? D HOH . 4 1 A HOH 303 ? D HOH . 5 1 A HOH 304 ? D HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-03-29 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CBASS 'data collection' . ? 1 SCALEPACK 'data scaling' . ? 2 AMoRE phasing . ? 3 CNS refinement . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A SER 63 ? ? O A HOH 317 ? ? 2.10 2 1 O A HOH 410 ? ? O A HOH 424 ? ? 2.13 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 P B DT 201 ? ? 1_555 "O3'" B DA 216 ? ? 16_545 1.61 2 1 CD2 A LEU 120 ? ? 1_555 CD2 A LEU 120 ? ? 10_555 2.12 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DC 206 ? ? "C1'" B DC 206 ? ? N1 B DC 206 ? ? 110.11 108.30 1.81 0.30 N 2 1 "O4'" B DA 213 ? ? "C1'" B DA 213 ? ? N9 B DA 213 ? ? 110.52 108.30 2.22 0.30 N 3 1 CG A MET 80 ? ? SD A MET 80 ? ? CE A MET 80 ? ? 88.90 100.20 -11.30 1.60 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 4 ? ? -129.58 -144.48 2 1 GLN A 5 ? ? -38.76 119.87 3 1 LYS A 23 ? ? 56.23 -50.73 4 1 LYS A 36 ? ? -58.74 7.90 5 1 TYR A 37 ? ? -160.23 6.83 6 1 SER A 63 ? ? -105.17 -82.63 7 1 GLU A 64 ? ? -82.78 -95.49 8 1 TYR A 91 ? ? -147.72 20.92 9 1 LYS A 104 ? ? -39.38 -72.69 10 1 ASN A 105 ? ? -56.34 1.80 11 1 ARG A 117 ? ? -37.84 -35.16 12 1 ASP A 118 ? ? -64.21 -96.07 13 1 ILE A 119 ? ? -21.12 -44.93 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC B 206 ? ? 0.070 'SIDE CHAIN' 2 1 DT B 212 ? ? 0.068 'SIDE CHAIN' 3 1 DA B 213 ? ? 0.093 'SIDE CHAIN' # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id MET _pdbx_unobs_or_zero_occ_residues.auth_seq_id 1 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id B _pdbx_unobs_or_zero_occ_residues.label_comp_id MET _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLN N N N N 217 GLN CA C N S 218 GLN C C N N 219 GLN O O N N 220 GLN CB C N N 221 GLN CG C N N 222 GLN CD C N N 223 GLN OE1 O N N 224 GLN NE2 N N N 225 GLN OXT O N N 226 GLN H H N N 227 GLN H2 H N N 228 GLN HA H N N 229 GLN HB2 H N N 230 GLN HB3 H N N 231 GLN HG2 H N N 232 GLN HG3 H N N 233 GLN HE21 H N N 234 GLN HE22 H N N 235 GLN HXT H N N 236 GLU N N N N 237 GLU CA C N S 238 GLU C C N N 239 GLU O O N N 240 GLU CB C N N 241 GLU CG C N N 242 GLU CD C N N 243 GLU OE1 O N N 244 GLU OE2 O N N 245 GLU OXT O N N 246 GLU H H N N 247 GLU H2 H N N 248 GLU HA H N N 249 GLU HB2 H N N 250 GLU HB3 H N N 251 GLU HG2 H N N 252 GLU HG3 H N N 253 GLU HE2 H N N 254 GLU HXT H N N 255 GLY N N N N 256 GLY CA C N N 257 GLY C C N N 258 GLY O O N N 259 GLY OXT O N N 260 GLY H H N N 261 GLY H2 H N N 262 GLY HA2 H N N 263 GLY HA3 H N N 264 GLY HXT H N N 265 HOH O O N N 266 HOH H1 H N N 267 HOH H2 H N N 268 ILE N N N N 269 ILE CA C N S 270 ILE C C N N 271 ILE O O N N 272 ILE CB C N S 273 ILE CG1 C N N 274 ILE CG2 C N N 275 ILE CD1 C N N 276 ILE OXT O N N 277 ILE H H N N 278 ILE H2 H N N 279 ILE HA H N N 280 ILE HB H N N 281 ILE HG12 H N N 282 ILE HG13 H N N 283 ILE HG21 H N N 284 ILE HG22 H N N 285 ILE HG23 H N N 286 ILE HD11 H N N 287 ILE HD12 H N N 288 ILE HD13 H N N 289 ILE HXT H N N 290 LEU N N N N 291 LEU CA C N S 292 LEU C C N N 293 LEU O O N N 294 LEU CB C N N 295 LEU CG C N N 296 LEU CD1 C N N 297 LEU CD2 C N N 298 LEU OXT O N N 299 LEU H H N N 300 LEU H2 H N N 301 LEU HA H N N 302 LEU HB2 H N N 303 LEU HB3 H N N 304 LEU HG H N N 305 LEU HD11 H N N 306 LEU HD12 H N N 307 LEU HD13 H N N 308 LEU HD21 H N N 309 LEU HD22 H N N 310 LEU HD23 H N N 311 LEU HXT H N N 312 LYS N N N N 313 LYS CA C N S 314 LYS C C N N 315 LYS O O N N 316 LYS CB C N N 317 LYS CG C N N 318 LYS CD C N N 319 LYS CE C N N 320 LYS NZ N N N 321 LYS OXT O N N 322 LYS H H N N 323 LYS H2 H N N 324 LYS HA H N N 325 LYS HB2 H N N 326 LYS HB3 H N N 327 LYS HG2 H N N 328 LYS HG3 H N N 329 LYS HD2 H N N 330 LYS HD3 H N N 331 LYS HE2 H N N 332 LYS HE3 H N N 333 LYS HZ1 H N N 334 LYS HZ2 H N N 335 LYS HZ3 H N N 336 LYS HXT H N N 337 MET N N N N 338 MET CA C N S 339 MET C C N N 340 MET O O N N 341 MET CB C N N 342 MET CG C N N 343 MET SD S N N 344 MET CE C N N 345 MET OXT O N N 346 MET H H N N 347 MET H2 H N N 348 MET HA H N N 349 MET HB2 H N N 350 MET HB3 H N N 351 MET HG2 H N N 352 MET HG3 H N N 353 MET HE1 H N N 354 MET HE2 H N N 355 MET HE3 H N N 356 MET HXT H N N 357 PHE N N N N 358 PHE CA C N S 359 PHE C C N N 360 PHE O O N N 361 PHE CB C N N 362 PHE CG C Y N 363 PHE CD1 C Y N 364 PHE CD2 C Y N 365 PHE CE1 C Y N 366 PHE CE2 C Y N 367 PHE CZ C Y N 368 PHE OXT O N N 369 PHE H H N N 370 PHE H2 H N N 371 PHE HA H N N 372 PHE HB2 H N N 373 PHE HB3 H N N 374 PHE HD1 H N N 375 PHE HD2 H N N 376 PHE HE1 H N N 377 PHE HE2 H N N 378 PHE HZ H N N 379 PHE HXT H N N 380 SER N N N N 381 SER CA C N S 382 SER C C N N 383 SER O O N N 384 SER CB C N N 385 SER OG O N N 386 SER OXT O N N 387 SER H H N N 388 SER H2 H N N 389 SER HA H N N 390 SER HB2 H N N 391 SER HB3 H N N 392 SER HG H N N 393 SER HXT H N N 394 THR N N N N 395 THR CA C N S 396 THR C C N N 397 THR O O N N 398 THR CB C N R 399 THR OG1 O N N 400 THR CG2 C N N 401 THR OXT O N N 402 THR H H N N 403 THR H2 H N N 404 THR HA H N N 405 THR HB H N N 406 THR HG1 H N N 407 THR HG21 H N N 408 THR HG22 H N N 409 THR HG23 H N N 410 THR HXT H N N 411 TRP N N N N 412 TRP CA C N S 413 TRP C C N N 414 TRP O O N N 415 TRP CB C N N 416 TRP CG C Y N 417 TRP CD1 C Y N 418 TRP CD2 C Y N 419 TRP NE1 N Y N 420 TRP CE2 C Y N 421 TRP CE3 C Y N 422 TRP CZ2 C Y N 423 TRP CZ3 C Y N 424 TRP CH2 C Y N 425 TRP OXT O N N 426 TRP H H N N 427 TRP H2 H N N 428 TRP HA H N N 429 TRP HB2 H N N 430 TRP HB3 H N N 431 TRP HD1 H N N 432 TRP HE1 H N N 433 TRP HE3 H N N 434 TRP HZ2 H N N 435 TRP HZ3 H N N 436 TRP HH2 H N N 437 TRP HXT H N N 438 TYR N N N N 439 TYR CA C N S 440 TYR C C N N 441 TYR O O N N 442 TYR CB C N N 443 TYR CG C Y N 444 TYR CD1 C Y N 445 TYR CD2 C Y N 446 TYR CE1 C Y N 447 TYR CE2 C Y N 448 TYR CZ C Y N 449 TYR OH O N N 450 TYR OXT O N N 451 TYR H H N N 452 TYR H2 H N N 453 TYR HA H N N 454 TYR HB2 H N N 455 TYR HB3 H N N 456 TYR HD1 H N N 457 TYR HD2 H N N 458 TYR HE1 H N N 459 TYR HE2 H N N 460 TYR HH H N N 461 TYR HXT H N N 462 VAL N N N N 463 VAL CA C N S 464 VAL C C N N 465 VAL O O N N 466 VAL CB C N N 467 VAL CG1 C N N 468 VAL CG2 C N N 469 VAL OXT O N N 470 VAL H H N N 471 VAL H2 H N N 472 VAL HA H N N 473 VAL HB H N N 474 VAL HG11 H N N 475 VAL HG12 H N N 476 VAL HG13 H N N 477 VAL HG21 H N N 478 VAL HG22 H N N 479 VAL HG23 H N N 480 VAL HXT H N N 481 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 HOH O H1 sing N N 265 HOH O H2 sing N N 266 ILE N CA sing N N 267 ILE N H sing N N 268 ILE N H2 sing N N 269 ILE CA C sing N N 270 ILE CA CB sing N N 271 ILE CA HA sing N N 272 ILE C O doub N N 273 ILE C OXT sing N N 274 ILE CB CG1 sing N N 275 ILE CB CG2 sing N N 276 ILE CB HB sing N N 277 ILE CG1 CD1 sing N N 278 ILE CG1 HG12 sing N N 279 ILE CG1 HG13 sing N N 280 ILE CG2 HG21 sing N N 281 ILE CG2 HG22 sing N N 282 ILE CG2 HG23 sing N N 283 ILE CD1 HD11 sing N N 284 ILE CD1 HD12 sing N N 285 ILE CD1 HD13 sing N N 286 ILE OXT HXT sing N N 287 LEU N CA sing N N 288 LEU N H sing N N 289 LEU N H2 sing N N 290 LEU CA C sing N N 291 LEU CA CB sing N N 292 LEU CA HA sing N N 293 LEU C O doub N N 294 LEU C OXT sing N N 295 LEU CB CG sing N N 296 LEU CB HB2 sing N N 297 LEU CB HB3 sing N N 298 LEU CG CD1 sing N N 299 LEU CG CD2 sing N N 300 LEU CG HG sing N N 301 LEU CD1 HD11 sing N N 302 LEU CD1 HD12 sing N N 303 LEU CD1 HD13 sing N N 304 LEU CD2 HD21 sing N N 305 LEU CD2 HD22 sing N N 306 LEU CD2 HD23 sing N N 307 LEU OXT HXT sing N N 308 LYS N CA sing N N 309 LYS N H sing N N 310 LYS N H2 sing N N 311 LYS CA C sing N N 312 LYS CA CB sing N N 313 LYS CA HA sing N N 314 LYS C O doub N N 315 LYS C OXT sing N N 316 LYS CB CG sing N N 317 LYS CB HB2 sing N N 318 LYS CB HB3 sing N N 319 LYS CG CD sing N N 320 LYS CG HG2 sing N N 321 LYS CG HG3 sing N N 322 LYS CD CE sing N N 323 LYS CD HD2 sing N N 324 LYS CD HD3 sing N N 325 LYS CE NZ sing N N 326 LYS CE HE2 sing N N 327 LYS CE HE3 sing N N 328 LYS NZ HZ1 sing N N 329 LYS NZ HZ2 sing N N 330 LYS NZ HZ3 sing N N 331 LYS OXT HXT sing N N 332 MET N CA sing N N 333 MET N H sing N N 334 MET N H2 sing N N 335 MET CA C sing N N 336 MET CA CB sing N N 337 MET CA HA sing N N 338 MET C O doub N N 339 MET C OXT sing N N 340 MET CB CG sing N N 341 MET CB HB2 sing N N 342 MET CB HB3 sing N N 343 MET CG SD sing N N 344 MET CG HG2 sing N N 345 MET CG HG3 sing N N 346 MET SD CE sing N N 347 MET CE HE1 sing N N 348 MET CE HE2 sing N N 349 MET CE HE3 sing N N 350 MET OXT HXT sing N N 351 PHE N CA sing N N 352 PHE N H sing N N 353 PHE N H2 sing N N 354 PHE CA C sing N N 355 PHE CA CB sing N N 356 PHE CA HA sing N N 357 PHE C O doub N N 358 PHE C OXT sing N N 359 PHE CB CG sing N N 360 PHE CB HB2 sing N N 361 PHE CB HB3 sing N N 362 PHE CG CD1 doub Y N 363 PHE CG CD2 sing Y N 364 PHE CD1 CE1 sing Y N 365 PHE CD1 HD1 sing N N 366 PHE CD2 CE2 doub Y N 367 PHE CD2 HD2 sing N N 368 PHE CE1 CZ doub Y N 369 PHE CE1 HE1 sing N N 370 PHE CE2 CZ sing Y N 371 PHE CE2 HE2 sing N N 372 PHE CZ HZ sing N N 373 PHE OXT HXT sing N N 374 SER N CA sing N N 375 SER N H sing N N 376 SER N H2 sing N N 377 SER CA C sing N N 378 SER CA CB sing N N 379 SER CA HA sing N N 380 SER C O doub N N 381 SER C OXT sing N N 382 SER CB OG sing N N 383 SER CB HB2 sing N N 384 SER CB HB3 sing N N 385 SER OG HG sing N N 386 SER OXT HXT sing N N 387 THR N CA sing N N 388 THR N H sing N N 389 THR N H2 sing N N 390 THR CA C sing N N 391 THR CA CB sing N N 392 THR CA HA sing N N 393 THR C O doub N N 394 THR C OXT sing N N 395 THR CB OG1 sing N N 396 THR CB CG2 sing N N 397 THR CB HB sing N N 398 THR OG1 HG1 sing N N 399 THR CG2 HG21 sing N N 400 THR CG2 HG22 sing N N 401 THR CG2 HG23 sing N N 402 THR OXT HXT sing N N 403 TRP N CA sing N N 404 TRP N H sing N N 405 TRP N H2 sing N N 406 TRP CA C sing N N 407 TRP CA CB sing N N 408 TRP CA HA sing N N 409 TRP C O doub N N 410 TRP C OXT sing N N 411 TRP CB CG sing N N 412 TRP CB HB2 sing N N 413 TRP CB HB3 sing N N 414 TRP CG CD1 doub Y N 415 TRP CG CD2 sing Y N 416 TRP CD1 NE1 sing Y N 417 TRP CD1 HD1 sing N N 418 TRP CD2 CE2 doub Y N 419 TRP CD2 CE3 sing Y N 420 TRP NE1 CE2 sing Y N 421 TRP NE1 HE1 sing N N 422 TRP CE2 CZ2 sing Y N 423 TRP CE3 CZ3 doub Y N 424 TRP CE3 HE3 sing N N 425 TRP CZ2 CH2 doub Y N 426 TRP CZ2 HZ2 sing N N 427 TRP CZ3 CH2 sing Y N 428 TRP CZ3 HZ3 sing N N 429 TRP CH2 HH2 sing N N 430 TRP OXT HXT sing N N 431 TYR N CA sing N N 432 TYR N H sing N N 433 TYR N H2 sing N N 434 TYR CA C sing N N 435 TYR CA CB sing N N 436 TYR CA HA sing N N 437 TYR C O doub N N 438 TYR C OXT sing N N 439 TYR CB CG sing N N 440 TYR CB HB2 sing N N 441 TYR CB HB3 sing N N 442 TYR CG CD1 doub Y N 443 TYR CG CD2 sing Y N 444 TYR CD1 CE1 sing Y N 445 TYR CD1 HD1 sing N N 446 TYR CD2 CE2 doub Y N 447 TYR CD2 HD2 sing N N 448 TYR CE1 CZ doub Y N 449 TYR CE1 HE1 sing N N 450 TYR CE2 CZ sing Y N 451 TYR CE2 HE2 sing N N 452 TYR CZ OH sing N N 453 TYR OH HH sing N N 454 TYR OXT HXT sing N N 455 VAL N CA sing N N 456 VAL N H sing N N 457 VAL N H2 sing N N 458 VAL CA C sing N N 459 VAL CA CB sing N N 460 VAL CA HA sing N N 461 VAL C O doub N N 462 VAL C OXT sing N N 463 VAL CB CG1 sing N N 464 VAL CB CG2 sing N N 465 VAL CB HB sing N N 466 VAL CG1 HG11 sing N N 467 VAL CG1 HG12 sing N N 468 VAL CG1 HG13 sing N N 469 VAL CG2 HG21 sing N N 470 VAL CG2 HG22 sing N N 471 VAL CG2 HG23 sing N N 472 VAL OXT HXT sing N N 473 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1XSD 'double helix' 1XSD 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 A DA 16 10_444 0.105 -0.221 0.383 -1.708 -2.419 3.850 1 B_DT201:DA216_B B 201 ? B 216 ? 20 1 1 A DA 2 1_555 A DT 15 10_444 0.622 -0.408 0.264 -0.283 -1.872 -1.747 2 B_DA202:DT215_B B 202 ? B 215 ? 20 1 1 A DC 3 1_555 A DG 14 10_444 0.004 -0.416 0.042 0.828 -4.573 -1.386 3 B_DC203:DG214_B B 203 ? B 214 ? 19 1 1 A DT 4 1_555 A DA 13 10_444 -0.383 -0.311 -0.045 -1.381 0.448 -2.223 4 B_DT204:DA213_B B 204 ? B 213 ? 20 1 1 A DA 5 1_555 A DT 12 10_444 0.663 -0.102 -0.180 2.974 -1.811 0.941 5 B_DA205:DT212_B B 205 ? B 212 ? 20 1 1 A DC 6 1_555 A DG 11 10_444 0.377 -0.263 -0.513 10.158 -4.446 -2.135 6 B_DC206:DG211_B B 206 ? B 211 ? 19 1 1 A DA 7 1_555 A DT 10 10_444 -0.174 -0.156 -0.196 9.898 -13.419 2.066 7 B_DA207:DT210_B B 207 ? B 210 ? 20 1 1 A DT 8 1_555 A DA 9 10_444 -0.919 -0.446 0.030 5.278 -14.458 -3.251 8 B_DT208:DA209_B B 208 ? B 209 ? 20 1 1 A DA 9 1_555 A DT 8 10_444 0.919 -0.446 0.030 -5.278 -14.458 -3.251 9 B_DA209:DT208_B B 209 ? B 208 ? 20 1 1 A DT 10 1_555 A DA 7 10_444 0.174 -0.156 -0.196 -9.898 -13.419 2.066 10 B_DT210:DA207_B B 210 ? B 207 ? 20 1 1 A DG 11 1_555 A DC 6 10_444 -0.377 -0.263 -0.513 -10.158 -4.446 -2.135 11 B_DG211:DC206_B B 211 ? B 206 ? 19 1 1 A DT 12 1_555 A DA 5 10_444 -0.663 -0.102 -0.180 -2.974 -1.811 0.941 12 B_DT212:DA205_B B 212 ? B 205 ? 20 1 1 A DA 13 1_555 A DT 4 10_444 0.383 -0.311 -0.045 1.381 0.448 -2.223 13 B_DA213:DT204_B B 213 ? B 204 ? 20 1 1 A DG 14 1_555 A DC 3 10_444 -0.004 -0.416 0.042 -0.828 -4.573 -1.386 14 B_DG214:DC203_B B 214 ? B 203 ? 19 1 1 A DT 15 1_555 A DA 2 10_444 -0.622 -0.408 0.264 0.283 -1.872 -1.747 15 B_DT215:DA202_B B 215 ? B 202 ? 20 1 1 A DA 16 1_555 A DT 1 10_444 -0.105 -0.221 0.383 1.708 -2.419 3.850 16 B_DA216:DT201_B B 216 ? B 201 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 A DA 16 10_444 A DA 2 1_555 A DT 15 10_444 -0.146 -0.541 3.103 1.743 0.925 40.358 -0.882 0.397 3.082 1.340 -2.524 40.404 1 BB_DT201DA202:DT215DA216_BB B 201 ? B 216 ? B 202 ? B 215 ? 1 A DA 2 1_555 A DT 15 10_444 A DC 3 1_555 A DG 14 10_444 0.558 -0.951 3.280 1.356 -0.139 34.340 -1.588 -0.731 3.303 -0.236 -2.296 34.366 2 BB_DA202DC203:DG214DT215_BB B 202 ? B 215 ? B 203 ? B 214 ? 1 A DC 3 1_555 A DG 14 10_444 A DT 4 1_555 A DA 13 10_444 0.480 -0.680 3.425 0.638 -5.557 35.035 -0.248 -0.689 3.497 -9.158 -1.051 35.465 3 BB_DC203DT204:DA213DG214_BB B 203 ? B 214 ? B 204 ? B 213 ? 1 A DT 4 1_555 A DA 13 10_444 A DA 5 1_555 A DT 12 10_444 -0.641 -1.002 3.167 -0.725 4.379 29.486 -2.813 1.102 3.004 8.542 1.414 29.811 4 BB_DT204DA205:DT212DA213_BB B 204 ? B 213 ? B 205 ? B 212 ? 1 A DA 5 1_555 A DT 12 10_444 A DC 6 1_555 A DG 11 10_444 0.051 -0.911 3.152 2.912 1.595 23.549 -2.711 0.793 3.068 3.882 -7.089 23.779 5 BB_DA205DC206:DG211DT212_BB B 205 ? B 212 ? B 206 ? B 211 ? 1 A DC 6 1_555 A DG 11 10_444 A DA 7 1_555 A DT 10 10_444 -0.016 1.079 3.302 1.425 9.561 37.334 0.391 0.210 3.461 14.637 -2.182 38.522 6 BB_DC206DA207:DT210DG211_BB B 206 ? B 211 ? B 207 ? B 210 ? 1 A DA 7 1_555 A DT 10 10_444 A DT 8 1_555 A DA 9 10_444 0.249 -0.755 3.243 -0.101 3.577 29.129 -2.244 -0.513 3.129 7.078 0.199 29.343 7 BB_DA207DT208:DA209DT210_BB B 207 ? B 210 ? B 208 ? B 209 ? 1 A DT 8 1_555 A DA 9 10_444 A DA 9 1_555 A DT 8 10_444 0.000 -0.568 3.460 0.000 8.331 44.226 -1.527 0.000 3.306 10.950 0.000 44.965 8 BB_DT208DA209:DT208DA209_BB B 208 ? B 209 ? B 209 ? B 208 ? 1 A DA 9 1_555 A DT 8 10_444 A DT 10 1_555 A DA 7 10_444 -0.249 -0.755 3.243 0.101 3.577 29.129 -2.244 0.513 3.129 7.078 -0.199 29.343 9 BB_DA209DT210:DA207DT208_BB B 209 ? B 208 ? B 210 ? B 207 ? 1 A DT 10 1_555 A DA 7 10_444 A DG 11 1_555 A DC 6 10_444 0.016 1.079 3.302 -1.425 9.561 37.334 0.391 -0.210 3.461 14.637 2.182 38.522 10 BB_DT210DG211:DC206DA207_BB B 210 ? B 207 ? B 211 ? B 206 ? 1 A DG 11 1_555 A DC 6 10_444 A DT 12 1_555 A DA 5 10_444 -0.051 -0.911 3.152 -2.912 1.594 23.549 -2.711 -0.793 3.068 3.882 7.089 23.779 11 BB_DG211DT212:DA205DC206_BB B 211 ? B 206 ? B 212 ? B 205 ? 1 A DT 12 1_555 A DA 5 10_444 A DA 13 1_555 A DT 4 10_444 0.641 -1.002 3.167 0.725 4.379 29.486 -2.813 -1.102 3.004 8.542 -1.414 29.811 12 BB_DT212DA213:DT204DA205_BB B 212 ? B 205 ? B 213 ? B 204 ? 1 A DA 13 1_555 A DT 4 10_444 A DG 14 1_555 A DC 3 10_444 -0.480 -0.680 3.425 -0.638 -5.557 35.035 -0.248 0.689 3.497 -9.158 1.051 35.465 13 BB_DA213DG214:DC203DT204_BB B 213 ? B 204 ? B 214 ? B 203 ? 1 A DG 14 1_555 A DC 3 10_444 A DT 15 1_555 A DA 2 10_444 -0.558 -0.951 3.280 -1.356 -0.139 34.340 -1.588 0.731 3.303 -0.236 2.296 34.366 14 BB_DG214DT215:DA202DC203_BB B 214 ? B 203 ? B 215 ? B 202 ? 1 A DT 15 1_555 A DA 2 10_444 A DA 16 1_555 A DT 1 10_444 0.146 -0.541 3.103 -1.743 0.925 40.358 -0.882 -0.397 3.082 1.340 2.524 40.404 15 BB_DT215DA216:DT201DA202_BB B 215 ? B 202 ? B 216 ? B 201 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1OKR _pdbx_initial_refinement_model.details 'PDB entry 1OKR' #