data_1XT5 # _entry.id 1XT5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1XT5 RCSB RCSB030738 WWPDB D_1000030738 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1XT5 _pdbx_database_status.recvd_initial_deposition_date 2004-10-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hernandez Prada, J.A.' 1 'Haire, R.N.' 2 'Cannon, J.P.' 3 'Allaire, M.' 4 'Jakoncic, J.' 5 'Stojanoff, V.' 6 'Litman, G.W.' 7 'Ostrov, D.A.' 8 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Ancient evolutionary origin of diversified variable regions demonstrated by crystal structures of an immune-type receptor in amphioxus. ; Nat.Immunol. 7 875 882 2006 ? UK 1529-2908 ? ? 16799561 10.1038/ni1359 1 ;Crystallization and preliminary X-ray analysis of VCBP3 from Branchiostoma floridae. ; 'Acta Crystallogr.,Sect.D' 60 2022 2024 2004 ABCRE6 DK 0907-4449 0766 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Haire, R.N.' 1 primary 'Allaire, M.' 2 primary 'Jakoncic, J.' 3 primary 'Stojanoff, V.' 4 primary 'Cannon, J.P.' 5 primary 'Litman, G.W.' 6 primary 'Ostrov, D.A.' 7 1 'Hernandez Prada, J.A.' 8 1 'Haire, R.N.' 9 1 'Cannon, J.P.' 10 1 'Litman, G.W.' 11 1 'Ostrov, D.A.' 12 # _cell.entry_id 1XT5 _cell.length_a 59.191 _cell.length_b 59.191 _cell.length_c 79.263 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XT5 _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'variable region-containing chitin-binding protein 3' 14797.479 1 ? ? 'sequence database residues 16-150: contains immunoglobulin like region (residues 33-146)' ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 water nat water 18.015 223 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GQSIMTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDF LGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHT ; _entity_poly.pdbx_seq_one_letter_code_can ;GQSIMTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDF LGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLN n 1 3 SER n 1 4 ILE n 1 5 MET n 1 6 THR n 1 7 VAL n 1 8 ARG n 1 9 THR n 1 10 THR n 1 11 HIS n 1 12 THR n 1 13 GLU n 1 14 VAL n 1 15 GLU n 1 16 VAL n 1 17 HIS n 1 18 ALA n 1 19 GLY n 1 20 GLY n 1 21 THR n 1 22 VAL n 1 23 GLU n 1 24 LEU n 1 25 PRO n 1 26 CYS n 1 27 SER n 1 28 TYR n 1 29 GLN n 1 30 LEU n 1 31 ALA n 1 32 ASN n 1 33 ASP n 1 34 THR n 1 35 GLN n 1 36 PRO n 1 37 PRO n 1 38 VAL n 1 39 ILE n 1 40 SER n 1 41 TRP n 1 42 LEU n 1 43 LYS n 1 44 GLY n 1 45 ALA n 1 46 SER n 1 47 PRO n 1 48 ASP n 1 49 ARG n 1 50 SER n 1 51 THR n 1 52 LYS n 1 53 VAL n 1 54 PHE n 1 55 LYS n 1 56 GLY n 1 57 ASN n 1 58 TYR n 1 59 ASN n 1 60 TRP n 1 61 GLN n 1 62 GLY n 1 63 GLU n 1 64 GLY n 1 65 LEU n 1 66 GLY n 1 67 PHE n 1 68 VAL n 1 69 GLU n 1 70 SER n 1 71 ASP n 1 72 SER n 1 73 TYR n 1 74 LYS n 1 75 GLU n 1 76 SER n 1 77 PHE n 1 78 GLY n 1 79 ASP n 1 80 PHE n 1 81 LEU n 1 82 GLY n 1 83 ARG n 1 84 ALA n 1 85 SER n 1 86 VAL n 1 87 ALA n 1 88 ASN n 1 89 LEU n 1 90 ALA n 1 91 ALA n 1 92 PRO n 1 93 THR n 1 94 LEU n 1 95 ARG n 1 96 LEU n 1 97 THR n 1 98 HIS n 1 99 VAL n 1 100 HIS n 1 101 PRO n 1 102 GLN n 1 103 ASP n 1 104 GLY n 1 105 GLY n 1 106 ARG n 1 107 TYR n 1 108 TRP n 1 109 CYS n 1 110 GLN n 1 111 VAL n 1 112 ALA n 1 113 GLN n 1 114 TRP n 1 115 SER n 1 116 ILE n 1 117 ARG n 1 118 THR n 1 119 GLU n 1 120 PHE n 1 121 GLY n 1 122 LEU n 1 123 ASP n 1 124 ALA n 1 125 LYS n 1 126 SER n 1 127 VAL n 1 128 VAL n 1 129 LEU n 1 130 LYS n 1 131 VAL n 1 132 THR n 1 133 GLY n 1 134 HIS n 1 135 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Florida lancelet' _entity_src_gen.gene_src_genus Branchiostoma _entity_src_gen.pdbx_gene_src_gene VCBP3 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Branchiostoma floridae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7739 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8I9N0_BRAFL _struct_ref.pdbx_db_accession Q8I9N0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GQSIMTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDF LGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHT ; _struct_ref.pdbx_align_begin 16 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1XT5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 135 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8I9N0 _struct_ref_seq.db_align_beg 16 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 150 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 135 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1XT5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.708 _exptl_crystal.density_percent_sol 54.57 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details ;1.2-1.4 M ammonium sulfate, 0.1 M NaCl, 0.1 M tris-HCl (or HEPES), 12% glycerol, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2004-06-13 _diffrn_detector.details 'Oxford Danfysik toroidal focusing mirror, Si(111) channel cut monochromator' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) channel cut monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.8000 1.0 2 0.9796 1.0 3 0.97908 1.0 4 0.95007 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X6A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X6A _diffrn_source.pdbx_wavelength 0.8000 _diffrn_source.pdbx_wavelength_list '0.9796, 0.97908, 0.95007' # _reflns.entry_id 1XT5 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30 _reflns.d_resolution_high 1.15 _reflns.number_obs 57420 _reflns.number_all 57420 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.049 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 59.3 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 14 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.15 _reflns_shell.d_res_low 1.16 _reflns_shell.percent_possible_all 99.7 _reflns_shell.Rmerge_I_obs 0.37 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6.0 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1898 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1XT5 _refine.ls_number_reflns_obs 51693 _refine.ls_number_reflns_all 51693 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 1.15 _refine.ls_percent_reflns_obs 89.8 _refine.ls_R_factor_obs 0.1277 _refine.ls_R_factor_all 0.1277 _refine.ls_R_factor_R_work 0.1269 _refine.ls_R_factor_R_free 0.1434 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 11.3 _refine.ls_number_reflns_R_free 5835 _refine.ls_number_parameters 11572 _refine.ls_number_restraints 13947 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details ;ANISOTROPIC SCALING APPLIED BY THE METHOD OF PARKIN, MOEZZI & HOPE, J.APPL.CRYST.28(1995)53-56 ANISOTROPIC REFINEMENT REDUCED FREE R (NO CUTOFF) BY ~3%. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model Anisotropic _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1XT5 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 5 _refine_analyze.occupancy_sum_hydrogen 904.70 _refine_analyze.occupancy_sum_non_hydrogen 1214.85 _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1057 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 223 _refine_hist.number_atoms_total 1285 _refine_hist.d_res_high 1.15 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.016 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.032 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0318 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.100 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.115 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.031 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.005 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.023 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.083 ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_all _refine_ls_shell.pdbx_refine_id _refine_ls_shell.R_factor_all . 1.150 1.200 . 0.147 100 . . . . 6132 . . 'X-RAY DIFFRACTION' . . 1.200 1.400 . 0.118 100 . . . . 16692 . . 'X-RAY DIFFRACTION' . . 1.400 1.600 . 0.103 100 . . . . 9457 . . 'X-RAY DIFFRACTION' . . 1.600 1.810 . 0.101 100 . . . . 5898 . . 'X-RAY DIFFRACTION' . . 1.810 2.000 . 0.11 100 . . . . 3449 . . 'X-RAY DIFFRACTION' . . 2.000 20 . 0.15 100 . . . . 10065 . . 'X-RAY DIFFRACTION' . # _pdbx_refine.entry_id 1XT5 _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.1322 _pdbx_refine.free_R_factor_no_cutoff 0.1528 _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 11.3 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 5835 _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff 0.1269 _pdbx_refine.free_R_factor_4sig_cutoff 0.1434 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 11.3 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 4862 _pdbx_refine.number_reflns_obs_4sig_cutoff 42988 _pdbx_refine.number_reflns_obs_no_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 1XT5 _struct.title 'Crystal Structure of VCBP3, domain 1, from Branchiostoma floridae' _struct.pdbx_descriptor 'variable region-containing chitin-binding protein 3' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1XT5 _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'innate immunity, vcbp, primordial antigen receptor, florida lancelet, amphioxus, IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details 'biological unit unknown' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 78 ? LEU A 81 ? GLY A 78 LEU A 81 5 ? 4 HELX_P HELX_P2 2 HIS A 100 ? GLY A 104 ? HIS A 100 GLY A 104 5 ? 5 HELX_P HELX_P3 3 THR A 118 ? PHE A 120 ? THR A 118 PHE A 120 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 26 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 109 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 26 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 109 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.041 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 6 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 4 ? ARG A 8 ? ILE A 4 ARG A 8 A 2 SER A 27 ? ALA A 31 ? SER A 27 ALA A 31 B 1 GLU A 13 ? HIS A 17 ? GLU A 13 HIS A 17 B 2 LEU A 122 ? THR A 132 ? LEU A 122 THR A 132 B 3 GLY A 105 ? ALA A 112 ? GLY A 105 ALA A 112 B 4 VAL A 38 ? GLY A 44 ? VAL A 38 GLY A 44 B 5 SER A 50 ? TYR A 58 ? SER A 50 TYR A 58 B 6 SER A 72 ? SER A 76 ? SER A 72 SER A 76 C 1 VAL A 22 ? LEU A 24 ? VAL A 22 LEU A 24 C 2 LEU A 94 ? LEU A 96 ? LEU A 94 LEU A 96 C 3 ALA A 84 ? VAL A 86 ? ALA A 84 VAL A 86 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 8 ? N ARG A 8 O SER A 27 ? O SER A 27 B 1 2 N VAL A 14 ? N VAL A 14 O LYS A 130 ? O LYS A 130 B 2 3 O LYS A 125 ? O LYS A 125 N CYS A 109 ? N CYS A 109 B 3 4 O TRP A 108 ? O TRP A 108 N LEU A 42 ? N LEU A 42 B 4 5 N ILE A 39 ? N ILE A 39 O GLY A 56 ? O GLY A 56 B 5 6 N ASN A 57 ? N ASN A 57 O TYR A 73 ? O TYR A 73 C 1 2 N VAL A 22 ? N VAL A 22 O LEU A 96 ? O LEU A 96 C 2 3 O ARG A 95 ? O ARG A 95 N SER A 85 ? N SER A 85 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 GLN A 2 ? GLN A 2 . ? 1_555 ? 2 AC1 8 SER A 3 ? SER A 3 . ? 1_555 ? 3 AC1 8 GLN A 113 ? GLN A 113 . ? 1_555 ? 4 AC1 8 ARG A 117 ? ARG A 117 . ? 1_555 ? 5 AC1 8 THR A 118 ? THR A 118 . ? 1_555 ? 6 AC1 8 HOH C . ? HOH A 1037 . ? 1_555 ? 7 AC1 8 HOH C . ? HOH A 1103 . ? 1_555 ? 8 AC1 8 HOH C . ? HOH A 1124 . ? 1_555 ? # _database_PDB_matrix.entry_id 1XT5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 1XT5 _atom_sites.fract_transf_matrix[1][1] 0.016894 _atom_sites.fract_transf_matrix[1][2] 0.009754 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019508 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012616 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 MET 5 5 5 MET MET A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 THR 10 10 10 THR THR A . n A 1 11 HIS 11 11 11 HIS HIS A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 HIS 17 17 17 HIS HIS A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 CYS 26 26 26 CYS CYS A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 TYR 28 28 28 TYR TYR A . n A 1 29 GLN 29 29 29 GLN GLN A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 ASN 32 32 32 ASN ASN A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 THR 34 34 34 THR THR A . n A 1 35 GLN 35 35 35 GLN GLN A . n A 1 36 PRO 36 36 36 PRO PRO A . n A 1 37 PRO 37 37 37 PRO PRO A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 TRP 41 41 41 TRP TRP A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 PRO 47 47 47 PRO PRO A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 PHE 54 54 54 PHE PHE A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 TYR 58 58 58 TYR TYR A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 TRP 60 60 60 TRP TRP A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 GLU 63 63 63 GLU GLY A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 LEU 65 65 65 LEU GLY A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 PHE 67 67 67 PHE PHE A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 ASP 71 71 71 ASP ASP A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 SER 76 76 76 SER SER A . n A 1 77 PHE 77 77 77 PHE PHE A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 ASP 79 79 79 ASP ASP A . n A 1 80 PHE 80 80 80 PHE PHE A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 ARG 83 83 83 ARG ARG A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 VAL 86 86 86 VAL VAL A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 PRO 92 92 92 PRO PRO A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 ARG 95 95 95 ARG ARG A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 HIS 98 98 98 HIS HIS A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 HIS 100 100 100 HIS HIS A . n A 1 101 PRO 101 101 101 PRO PRO A . n A 1 102 GLN 102 102 102 GLN GLN A . n A 1 103 ASP 103 103 103 ASP ASP A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 ARG 106 106 106 ARG ARG A . n A 1 107 TYR 107 107 107 TYR TYR A . n A 1 108 TRP 108 108 108 TRP TRP A . n A 1 109 CYS 109 109 109 CYS CYS A . n A 1 110 GLN 110 110 110 GLN GLN A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 GLN 113 113 113 GLN GLN A . n A 1 114 TRP 114 114 114 TRP TRP A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 ILE 116 116 116 ILE ILE A . n A 1 117 ARG 117 117 117 ARG ARG A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 GLU 119 119 119 GLU GLU A . n A 1 120 PHE 120 120 120 PHE PHE A . n A 1 121 GLY 121 121 121 GLY GLY A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 ASP 123 123 123 ASP ASP A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 LYS 125 125 125 LYS LYS A . n A 1 126 SER 126 126 126 SER SER A . n A 1 127 VAL 127 127 127 VAL VAL A . n A 1 128 VAL 128 128 128 VAL VAL A . n A 1 129 LEU 129 129 129 LEU LEU A . n A 1 130 LYS 130 130 130 LYS LYS A . n A 1 131 VAL 131 131 131 VAL VAL A . n A 1 132 THR 132 132 132 THR THR A . n A 1 133 GLY 133 133 133 GLY GLY A . n A 1 134 HIS 134 134 134 HIS HIS A . n A 1 135 THR 135 135 135 THR THR A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 1143 ? C HOH . 2 1 A HOH 1191 ? C HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-10-04 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 SHELX 'model building' . ? 3 SHELXL-97 refinement . ? 4 SOLVE phasing . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CD A ARG 8 ? ? NE A ARG 8 ? ? CZ A ARG 8 ? ? 142.84 123.60 19.24 1.40 N 2 1 NE A ARG 8 ? ? CZ A ARG 8 ? ? NH1 A ARG 8 ? ? 131.10 120.30 10.80 0.50 N 3 1 NE A ARG 8 ? ? CZ A ARG 8 ? ? NH2 A ARG 8 ? ? 115.45 120.30 -4.85 0.50 N 4 1 CD A ARG 49 ? ? NE A ARG 49 ? ? CZ A ARG 49 ? ? 161.36 123.60 37.76 1.40 N 5 1 NE A ARG 49 ? ? CZ A ARG 49 ? ? NH1 A ARG 49 ? ? 109.93 120.30 -10.37 0.50 N 6 1 NE A ARG 49 ? ? CZ A ARG 49 ? ? NH2 A ARG 49 ? ? 129.69 120.30 9.39 0.50 N 7 1 CB A ASP 79 ? ? CG A ASP 79 ? ? OD1 A ASP 79 ? ? 123.78 118.30 5.48 0.90 N 8 1 CB A ASP 79 ? ? CG A ASP 79 ? ? OD2 A ASP 79 ? ? 111.81 118.30 -6.49 0.90 N 9 1 NE A ARG 95 ? ? CZ A ARG 95 ? ? NH1 A ARG 95 ? ? 124.89 120.30 4.59 0.50 N 10 1 NE A ARG 95 ? ? CZ A ARG 95 ? ? NH2 A ARG 95 ? ? 116.10 120.30 -4.20 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 49 ? ? -100.76 72.05 2 1 GLU A 63 ? ? -57.37 48.47 3 1 LEU A 65 ? ? -115.90 76.00 4 1 ASP A 71 ? ? -115.86 76.53 5 1 PRO A 92 ? ? -81.91 47.58 6 1 HIS A 134 ? ? -130.42 -49.27 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 63 ? CB ? A GLU 63 CB 2 1 Y 1 A GLU 63 ? CG ? A GLU 63 CG 3 1 Y 1 A GLU 63 ? CD ? A GLU 63 CD 4 1 Y 1 A GLU 63 ? OE1 ? A GLU 63 OE1 5 1 Y 1 A GLU 63 ? OE2 ? A GLU 63 OE2 6 1 Y 1 A LEU 65 ? CB ? A LEU 65 CB 7 1 Y 1 A LEU 65 ? CG ? A LEU 65 CG 8 1 Y 1 A LEU 65 ? CD1 ? A LEU 65 CD1 9 1 Y 1 A LEU 65 ? CD2 ? A LEU 65 CD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 0 A GLU 63 ? A GLU 63 2 1 Y 0 A GLY 64 ? A GLY 64 3 1 Y 0 A LEU 65 ? A LEU 65 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 201 201 SO4 SO4 A . C 3 HOH 1 1001 1001 HOH HOH A . C 3 HOH 2 1002 1002 HOH HOH A . C 3 HOH 3 1003 1003 HOH HOH A . C 3 HOH 4 1004 1004 HOH HOH A . C 3 HOH 5 1005 1005 HOH HOH A . C 3 HOH 6 1006 1006 HOH HOH A . C 3 HOH 7 1007 1007 HOH HOH A . C 3 HOH 8 1008 1008 HOH HOH A . C 3 HOH 9 1009 1009 HOH HOH A . C 3 HOH 10 1010 1010 HOH HOH A . C 3 HOH 11 1011 1011 HOH HOH A . C 3 HOH 12 1012 1012 HOH HOH A . C 3 HOH 13 1013 1013 HOH HOH A . C 3 HOH 14 1014 1014 HOH HOH A . C 3 HOH 15 1015 1015 HOH HOH A . C 3 HOH 16 1016 1016 HOH HOH A . C 3 HOH 17 1017 1017 HOH HOH A . C 3 HOH 18 1018 1018 HOH HOH A . C 3 HOH 19 1019 1019 HOH HOH A . C 3 HOH 20 1020 1020 HOH HOH A . C 3 HOH 21 1021 1021 HOH HOH A . C 3 HOH 22 1022 1022 HOH HOH A . C 3 HOH 23 1023 1023 HOH HOH A . C 3 HOH 24 1024 1024 HOH HOH A . C 3 HOH 25 1025 1025 HOH HOH A . C 3 HOH 26 1026 1026 HOH HOH A . C 3 HOH 27 1027 1027 HOH HOH A . C 3 HOH 28 1028 1028 HOH HOH A . C 3 HOH 29 1029 1029 HOH HOH A . C 3 HOH 30 1030 1030 HOH HOH A . C 3 HOH 31 1031 1031 HOH HOH A . C 3 HOH 32 1032 1032 HOH HOH A . C 3 HOH 33 1033 1033 HOH HOH A . C 3 HOH 34 1034 1034 HOH HOH A . C 3 HOH 35 1035 1035 HOH HOH A . C 3 HOH 36 1036 1036 HOH HOH A . C 3 HOH 37 1037 1037 HOH HOH A . C 3 HOH 38 1038 1038 HOH HOH A . C 3 HOH 39 1039 1039 HOH HOH A . C 3 HOH 40 1040 1040 HOH HOH A . C 3 HOH 41 1041 1041 HOH HOH A . C 3 HOH 42 1042 1042 HOH HOH A . C 3 HOH 43 1043 1043 HOH HOH A . C 3 HOH 44 1044 1044 HOH HOH A . C 3 HOH 45 1045 1045 HOH HOH A . C 3 HOH 46 1046 1046 HOH HOH A . C 3 HOH 47 1047 1047 HOH HOH A . C 3 HOH 48 1048 1048 HOH HOH A . C 3 HOH 49 1049 1049 HOH HOH A . C 3 HOH 50 1050 1050 HOH HOH A . C 3 HOH 51 1051 1051 HOH HOH A . C 3 HOH 52 1052 1052 HOH HOH A . C 3 HOH 53 1053 1053 HOH HOH A . C 3 HOH 54 1054 1054 HOH HOH A . C 3 HOH 55 1055 1055 HOH HOH A . C 3 HOH 56 1056 1056 HOH HOH A . C 3 HOH 57 1057 1057 HOH HOH A . C 3 HOH 58 1058 1058 HOH HOH A . C 3 HOH 59 1059 1059 HOH HOH A . C 3 HOH 60 1060 1060 HOH HOH A . C 3 HOH 61 1061 1061 HOH HOH A . C 3 HOH 62 1062 1062 HOH HOH A . C 3 HOH 63 1063 1063 HOH HOH A . C 3 HOH 64 1064 1064 HOH HOH A . C 3 HOH 65 1065 1065 HOH HOH A . C 3 HOH 66 1066 1066 HOH HOH A . C 3 HOH 67 1067 1067 HOH HOH A . C 3 HOH 68 1068 1068 HOH HOH A . C 3 HOH 69 1069 1069 HOH HOH A . C 3 HOH 70 1070 1070 HOH HOH A . C 3 HOH 71 1071 1071 HOH HOH A . C 3 HOH 72 1072 1072 HOH HOH A . C 3 HOH 73 1073 1073 HOH HOH A . C 3 HOH 74 1074 1074 HOH HOH A . C 3 HOH 75 1075 1075 HOH HOH A . C 3 HOH 76 1076 1076 HOH HOH A . C 3 HOH 77 1077 1077 HOH HOH A . C 3 HOH 78 1078 1078 HOH HOH A . C 3 HOH 79 1079 1079 HOH HOH A . C 3 HOH 80 1080 1080 HOH HOH A . C 3 HOH 81 1081 1081 HOH HOH A . C 3 HOH 82 1082 1082 HOH HOH A . C 3 HOH 83 1083 1083 HOH HOH A . C 3 HOH 84 1084 1084 HOH HOH A . C 3 HOH 85 1085 1085 HOH HOH A . C 3 HOH 86 1086 1086 HOH HOH A . C 3 HOH 87 1087 1087 HOH HOH A . C 3 HOH 88 1088 1088 HOH HOH A . C 3 HOH 89 1089 1089 HOH HOH A . C 3 HOH 90 1090 1090 HOH HOH A . C 3 HOH 91 1091 1091 HOH HOH A . C 3 HOH 92 1092 1092 HOH HOH A . C 3 HOH 93 1093 1093 HOH HOH A . C 3 HOH 94 1094 1094 HOH HOH A . C 3 HOH 95 1095 1095 HOH HOH A . C 3 HOH 96 1096 1096 HOH HOH A . C 3 HOH 97 1097 1097 HOH HOH A . C 3 HOH 98 1098 1098 HOH HOH A . C 3 HOH 99 1099 1099 HOH HOH A . C 3 HOH 100 1100 1100 HOH HOH A . C 3 HOH 101 1101 1101 HOH HOH A . C 3 HOH 102 1102 1102 HOH HOH A . C 3 HOH 103 1103 1103 HOH HOH A . C 3 HOH 104 1104 1104 HOH HOH A . C 3 HOH 105 1105 1105 HOH HOH A . C 3 HOH 106 1106 1106 HOH HOH A . C 3 HOH 107 1107 1107 HOH HOH A . C 3 HOH 108 1108 1108 HOH HOH A . C 3 HOH 109 1109 1109 HOH HOH A . C 3 HOH 110 1110 1110 HOH HOH A . C 3 HOH 111 1111 1111 HOH HOH A . C 3 HOH 112 1112 1112 HOH HOH A . C 3 HOH 113 1113 1113 HOH HOH A . C 3 HOH 114 1114 1114 HOH HOH A . C 3 HOH 115 1115 1115 HOH HOH A . C 3 HOH 116 1116 1116 HOH HOH A . C 3 HOH 117 1117 1117 HOH HOH A . C 3 HOH 118 1118 1118 HOH HOH A . C 3 HOH 119 1119 1119 HOH HOH A . C 3 HOH 120 1120 1120 HOH HOH A . C 3 HOH 121 1121 1121 HOH HOH A . C 3 HOH 122 1122 1122 HOH HOH A . C 3 HOH 123 1123 1123 HOH HOH A . C 3 HOH 124 1124 1124 HOH HOH A . C 3 HOH 125 1125 1125 HOH HOH A . C 3 HOH 126 1126 1126 HOH HOH A . C 3 HOH 127 1127 1127 HOH HOH A . C 3 HOH 128 1128 1128 HOH HOH A . C 3 HOH 129 1129 1129 HOH HOH A . C 3 HOH 130 1130 1130 HOH HOH A . C 3 HOH 131 1131 1131 HOH HOH A . C 3 HOH 132 1132 1132 HOH HOH A . C 3 HOH 133 1133 1133 HOH HOH A . C 3 HOH 134 1134 1134 HOH HOH A . C 3 HOH 135 1135 1135 HOH HOH A . C 3 HOH 136 1136 1136 HOH HOH A . C 3 HOH 137 1137 1137 HOH HOH A . C 3 HOH 138 1138 1138 HOH HOH A . C 3 HOH 139 1139 1139 HOH HOH A . C 3 HOH 140 1140 1140 HOH HOH A . C 3 HOH 141 1141 1141 HOH HOH A . C 3 HOH 142 1142 1142 HOH HOH A . C 3 HOH 143 1143 1143 HOH HOH A . C 3 HOH 144 1144 1144 HOH HOH A . C 3 HOH 145 1145 1145 HOH HOH A . C 3 HOH 146 1146 1146 HOH HOH A . C 3 HOH 147 1147 1147 HOH HOH A . C 3 HOH 148 1148 1148 HOH HOH A . C 3 HOH 149 1149 1149 HOH HOH A . C 3 HOH 150 1150 1150 HOH HOH A . C 3 HOH 151 1151 1151 HOH HOH A . C 3 HOH 152 1152 1152 HOH HOH A . C 3 HOH 153 1153 1153 HOH HOH A . C 3 HOH 154 1154 1154 HOH HOH A . C 3 HOH 155 1155 1155 HOH HOH A . C 3 HOH 156 1156 1156 HOH HOH A . C 3 HOH 157 1157 1157 HOH HOH A . C 3 HOH 158 1158 1158 HOH HOH A . C 3 HOH 159 1159 1159 HOH HOH A . C 3 HOH 160 1160 1160 HOH HOH A . C 3 HOH 161 1161 1161 HOH HOH A . C 3 HOH 162 1162 1162 HOH HOH A . C 3 HOH 163 1163 1163 HOH HOH A . C 3 HOH 164 1164 1164 HOH HOH A . C 3 HOH 165 1165 1165 HOH HOH A . C 3 HOH 166 1166 1166 HOH HOH A . C 3 HOH 167 1167 1167 HOH HOH A . C 3 HOH 168 1168 1168 HOH HOH A . C 3 HOH 169 1169 1169 HOH HOH A . C 3 HOH 170 1170 1170 HOH HOH A . C 3 HOH 171 1171 1171 HOH HOH A . C 3 HOH 172 1172 1172 HOH HOH A . C 3 HOH 173 1173 1173 HOH HOH A . C 3 HOH 174 1174 1174 HOH HOH A . C 3 HOH 175 1175 1175 HOH HOH A . C 3 HOH 176 1176 1176 HOH HOH A . C 3 HOH 177 1177 1177 HOH HOH A . C 3 HOH 178 1178 1178 HOH HOH A . C 3 HOH 179 1179 1179 HOH HOH A . C 3 HOH 180 1180 1180 HOH HOH A . C 3 HOH 181 1181 1181 HOH HOH A . C 3 HOH 182 1182 1182 HOH HOH A . C 3 HOH 183 1183 1183 HOH HOH A . C 3 HOH 184 1184 1184 HOH HOH A . C 3 HOH 185 1185 1185 HOH HOH A . C 3 HOH 186 1186 1186 HOH HOH A . C 3 HOH 187 1187 1187 HOH HOH A . C 3 HOH 188 1188 1188 HOH HOH A . C 3 HOH 189 1189 1189 HOH HOH A . C 3 HOH 190 1190 1190 HOH HOH A . C 3 HOH 191 1191 1191 HOH HOH A . C 3 HOH 192 1192 1192 HOH HOH A . C 3 HOH 193 1193 1193 HOH HOH A . C 3 HOH 194 1194 1194 HOH HOH A . C 3 HOH 195 1195 1195 HOH HOH A . C 3 HOH 196 1196 1196 HOH HOH A . C 3 HOH 197 1197 1197 HOH HOH A . C 3 HOH 198 1198 1198 HOH HOH A . C 3 HOH 199 1199 1199 HOH HOH A . C 3 HOH 200 1200 1200 HOH HOH A . C 3 HOH 201 1201 1201 HOH HOH A . C 3 HOH 202 1202 1202 HOH HOH A . C 3 HOH 203 1203 1203 HOH HOH A . C 3 HOH 204 1204 1204 HOH HOH A . C 3 HOH 205 1205 1205 HOH HOH A . C 3 HOH 206 1206 1206 HOH HOH A . C 3 HOH 207 1207 1207 HOH HOH A . C 3 HOH 208 1208 1208 HOH HOH A . C 3 HOH 209 1209 1209 HOH HOH A . C 3 HOH 210 1210 1210 HOH HOH A . C 3 HOH 211 1211 1211 HOH HOH A . C 3 HOH 212 1212 1212 HOH HOH A . C 3 HOH 213 1213 1213 HOH HOH A . C 3 HOH 214 1214 1214 HOH HOH A . C 3 HOH 215 1215 1215 HOH HOH A . C 3 HOH 216 1216 1216 HOH HOH A . C 3 HOH 217 1217 1217 HOH HOH A . C 3 HOH 218 1218 1218 HOH HOH A . C 3 HOH 219 1219 1219 HOH HOH A . C 3 HOH 220 1220 1220 HOH HOH A . C 3 HOH 221 1221 1221 HOH HOH A . C 3 HOH 222 1222 1222 HOH HOH A . C 3 HOH 223 1223 1223 HOH HOH A . #