HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 22-OCT-04 1XTL TITLE CRYSTAL STRUCTURE OF P104H MUTANT OF SOD-LIKE PROTEIN FROM BACILLUS TITLE 2 SUBTILIS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL SUPEROXIDE DISMUTASE-LIKE PROTEIN YOJM; COMPND 3 CHAIN: B, A, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: TOP1 KEYWDS SOD, CU-ZN SOD, SOD-LIKE, SUPEROXIDE DISMUTASE MUTANTS, STRUCTURAL KEYWDS 2 GENOMICS, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR V.CALDERONE,S.MANGANI,L.BANCI,M.BENVENUTI,I.BERTINI,M.S.VIEZZOLI, AUTHOR 2 A.FANTONI REVDAT 5 25-OCT-23 1XTL 1 REMARK REVDAT 4 10-NOV-21 1XTL 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1XTL 1 VERSN REVDAT 2 24-FEB-09 1XTL 1 VERSN REVDAT 1 04-OCT-05 1XTL 0 JRNL AUTH L.BANCI,M.BENVENUTI,I.BERTINI,D.E.CABELLI,V.CALDERONE, JRNL AUTH 2 A.FANTONI,S.MANGANI,M.MIGLIARDI,M.S.VIEZZOLI JRNL TITL FROM AN INACTIVE PROKARYOTIC SOD HOMOLOGUE TO AN ACTIVE JRNL TITL 2 PROTEIN THROUGH SITE-DIRECTED MUTAGENESIS. JRNL REF J.AM.CHEM.SOC. V. 127 13287 2005 JRNL REFN ISSN 0002-7863 JRNL PMID 16173759 JRNL DOI 10.1021/JA052790O REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.BANCI,I.BERTINI,V.CALDERONE,F.CRAMARO,R.DEL CONTE, REMARK 1 AUTH 2 A.FANTONI,S.MANGANI,A.QUATTRONE,M.S.VIEZZOLI REMARK 1 TITL A PROKARYOTIC SUPEROXIDE DISMUTASE PARALOG LACKING TWO CU REMARK 1 TITL 2 LIGANDS: FROM LARGELY UNSTRUCTURED IN SOLUTION TO ORDERED IN REMARK 1 TITL 3 THE CRYSTAL. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 102 7541 2005 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 15897454 REMARK 1 DOI 10.1073/PNAS.0502450102 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 38482 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.300 REMARK 3 FREE R VALUE TEST SET COUNT : 3477 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2759 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 252 REMARK 3 BIN FREE R VALUE : 0.4490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4544 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 307 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.39000 REMARK 3 B22 (A**2) : 3.01000 REMARK 3 B33 (A**2) : -2.31000 REMARK 3 B12 (A**2) : 0.02000 REMARK 3 B13 (A**2) : -0.96000 REMARK 3 B23 (A**2) : -0.76000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.241 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.219 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.168 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.115 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4627 ; 0.030 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6242 ; 2.725 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 602 ;10.658 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 223 ;40.144 ;25.605 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 729 ;20.703 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;19.316 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 659 ; 0.213 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3617 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2043 ; 0.232 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2810 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 277 ; 0.202 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 9 ; 0.124 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 82 ; 0.285 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.286 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3142 ; 1.407 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4719 ; 2.062 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1718 ; 3.592 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1523 ; 4.975 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): 14 ;11.200 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1XTL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1000030753. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.37110 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL FOCUSSING MONO REMARK 200 CHROMATOR REMARK 200 OPTICS : DOUBLE CRYSTAL FOCUSSING MONO REMARK 200 CHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41966 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 38.958 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.24400 REMARK 200 R SYM FOR SHELL (I) : 0.24400 REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1S4I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA ACETATE, 20% PEG4000, 0.1M REMARK 280 AMMONIUM SULPHATE, 10MM ZNCL2, PH 4.6, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE PROTEIN IS A MONOMER IN VIVO BUT THERE ARE FOUR REMARK 300 MOLECULES IN THE ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -115.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.09286 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 12.07939 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 57.87070 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 22 REMARK 465 PRO B 23 REMARK 465 PRO B 24 REMARK 465 ASP B 25 REMARK 465 PRO B 26 REMARK 465 PRO B 27 REMARK 465 ASN B 28 REMARK 465 ARG B 29 REMARK 465 VAL B 30 REMARK 465 PRO B 31 REMARK 465 GLU B 32 REMARK 465 LYS B 33 REMARK 465 LYS B 34 REMARK 465 VAL B 35 REMARK 465 VAL B 36 REMARK 465 GLU B 37 REMARK 465 THR B 38 REMARK 465 SER B 39 REMARK 465 ASN B 192 REMARK 465 ASN B 193 REMARK 465 GLU B 194 REMARK 465 LYS B 195 REMARK 465 GLN B 196 REMARK 465 LYS A 22 REMARK 465 PRO A 23 REMARK 465 PRO A 24 REMARK 465 ASP A 25 REMARK 465 PRO A 26 REMARK 465 PRO A 27 REMARK 465 ASN A 28 REMARK 465 ARG A 29 REMARK 465 VAL A 30 REMARK 465 PRO A 31 REMARK 465 GLU A 32 REMARK 465 LYS A 33 REMARK 465 LYS A 34 REMARK 465 VAL A 35 REMARK 465 VAL A 36 REMARK 465 GLU A 37 REMARK 465 THR A 38 REMARK 465 SER A 39 REMARK 465 ASN A 192 REMARK 465 ASN A 193 REMARK 465 GLU A 194 REMARK 465 LYS A 195 REMARK 465 GLN A 196 REMARK 465 LYS C 22 REMARK 465 PRO C 23 REMARK 465 PRO C 24 REMARK 465 ASP C 25 REMARK 465 PRO C 26 REMARK 465 PRO C 27 REMARK 465 ASN C 28 REMARK 465 ARG C 29 REMARK 465 VAL C 30 REMARK 465 PRO C 31 REMARK 465 GLU C 32 REMARK 465 LYS C 33 REMARK 465 LYS C 34 REMARK 465 VAL C 35 REMARK 465 VAL C 36 REMARK 465 GLU C 37 REMARK 465 THR C 38 REMARK 465 SER C 39 REMARK 465 ASN C 192 REMARK 465 ASN C 193 REMARK 465 GLU C 194 REMARK 465 LYS C 195 REMARK 465 GLN C 196 REMARK 465 LYS D 22 REMARK 465 PRO D 23 REMARK 465 PRO D 24 REMARK 465 ASP D 25 REMARK 465 PRO D 26 REMARK 465 PRO D 27 REMARK 465 ASN D 28 REMARK 465 ARG D 29 REMARK 465 VAL D 30 REMARK 465 PRO D 31 REMARK 465 GLU D 32 REMARK 465 LYS D 33 REMARK 465 LYS D 34 REMARK 465 VAL D 35 REMARK 465 VAL D 36 REMARK 465 GLU D 37 REMARK 465 THR D 38 REMARK 465 SER D 39 REMARK 465 ASN D 192 REMARK 465 ASN D 193 REMARK 465 GLU D 194 REMARK 465 LYS D 195 REMARK 465 GLN D 196 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG B 50 NH2 REMARK 480 GLU A 51 OE1 REMARK 480 LYS A 148 NZ REMARK 480 ARG C 95 NE REMARK 480 ARG D 78 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL B 45 CA VAL B 45 CB 0.127 REMARK 500 VAL B 45 CB VAL B 45 CG1 0.132 REMARK 500 ARG B 50 CZ ARG B 50 NH2 -0.120 REMARK 500 PHE B 85 CE1 PHE B 85 CZ 0.117 REMARK 500 SER B 100 CB SER B 100 OG 0.101 REMARK 500 ALA B 101 CA ALA B 101 C 0.161 REMARK 500 GLY B 102 N GLY B 102 CA 0.096 REMARK 500 GLU A 51 CD GLU A 51 OE1 -0.114 REMARK 500 ASP A 65 C ASP A 65 O -0.174 REMARK 500 SER A 100 CA SER A 100 CB 0.091 REMARK 500 GLY A 102 N GLY A 102 CA 0.094 REMARK 500 ARG C 95 CD ARG C 95 NE 0.217 REMARK 500 ARG C 95 NE ARG C 95 CZ 0.213 REMARK 500 SER C 100 CB SER C 100 OG 0.083 REMARK 500 ALA C 101 CA ALA C 101 CB -0.163 REMARK 500 ALA C 101 CA ALA C 101 C 0.168 REMARK 500 GLY C 102 N GLY C 102 CA 0.156 REMARK 500 GLY C 102 CA GLY C 102 C 0.117 REMARK 500 ILE D 72 CA ILE D 72 CB 0.140 REMARK 500 TYR D 88 CE1 TYR D 88 CZ -0.079 REMARK 500 ALA D 101 CA ALA D 101 CB -0.178 REMARK 500 ALA D 101 CA ALA D 101 C 0.172 REMARK 500 GLY D 102 N GLY D 102 CA 0.131 REMARK 500 GLY D 150 C GLY D 150 O 0.312 REMARK 500 ASP D 159 CB ASP D 159 CG -0.138 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 50 NH1 - CZ - NH2 ANGL. DEV. = -19.4 DEGREES REMARK 500 ARG B 50 NE - CZ - NH2 ANGL. DEV. = 14.7 DEGREES REMARK 500 CYS B 93 CA - CB - SG ANGL. DEV. = 6.6 DEGREES REMARK 500 GLY B 102 CA - C - N ANGL. DEV. = 14.2 DEGREES REMARK 500 GLY B 102 O - C - N ANGL. DEV. = -10.9 DEGREES REMARK 500 GLY B 103 C - N - CA ANGL. DEV. = 16.1 DEGREES REMARK 500 GLY B 103 N - CA - C ANGL. DEV. = 16.0 DEGREES REMARK 500 HIS B 120 C - N - CA ANGL. DEV. = 32.4 DEGREES REMARK 500 HIS B 120 CA - CB - CG ANGL. DEV. = 10.3 DEGREES REMARK 500 ASP B 159 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP B 159 CB - CG - OD2 ANGL. DEV. = -9.8 DEGREES REMARK 500 ASP B 170 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 LEU B 190 CA - CB - CG ANGL. DEV. = 16.2 DEGREES REMARK 500 ASP A 64 O - C - N ANGL. DEV. = -14.2 DEGREES REMARK 500 ASP A 65 C - N - CA ANGL. DEV. = -16.3 DEGREES REMARK 500 ASP A 65 CA - C - O ANGL. DEV. = -13.2 DEGREES REMARK 500 SER A 100 C - N - CA ANGL. DEV. = 19.9 DEGREES REMARK 500 SER A 100 N - CA - CB ANGL. DEV. = 13.1 DEGREES REMARK 500 SER A 100 N - CA - C ANGL. DEV. = -22.6 DEGREES REMARK 500 ALA A 101 C - N - CA ANGL. DEV. = 17.9 DEGREES REMARK 500 GLY A 103 C - N - CA ANGL. DEV. = 14.8 DEGREES REMARK 500 LYS A 148 CD - CE - NZ ANGL. DEV. = -16.2 DEGREES REMARK 500 ARG C 78 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG C 95 CD - NE - CZ ANGL. DEV. = 23.9 DEGREES REMARK 500 ARG C 95 NE - CZ - NH1 ANGL. DEV. = -18.2 DEGREES REMARK 500 ARG C 95 NE - CZ - NH2 ANGL. DEV. = 15.5 DEGREES REMARK 500 SER C 100 N - CA - CB ANGL. DEV. = -10.7 DEGREES REMARK 500 ALA C 101 N - CA - CB ANGL. DEV. = -11.2 DEGREES REMARK 500 ALA C 101 CA - C - N ANGL. DEV. = 12.7 DEGREES REMARK 500 GLY C 102 CA - C - N ANGL. DEV. = 16.5 DEGREES REMARK 500 GLY C 102 O - C - N ANGL. DEV. = -13.2 DEGREES REMARK 500 GLY C 103 C - N - CA ANGL. DEV. = 20.4 DEGREES REMARK 500 ASP C 159 CB - CG - OD2 ANGL. DEV. = -8.0 DEGREES REMARK 500 ASP C 171 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG D 78 NH1 - CZ - NH2 ANGL. DEV. = -12.2 DEGREES REMARK 500 ARG D 78 NE - CZ - NH2 ANGL. DEV. = 9.8 DEGREES REMARK 500 ALA D 101 C - N - CA ANGL. DEV. = 16.0 DEGREES REMARK 500 ALA D 101 N - CA - CB ANGL. DEV. = -12.8 DEGREES REMARK 500 GLY D 102 CA - C - N ANGL. DEV. = 15.5 DEGREES REMARK 500 GLY D 102 O - C - N ANGL. DEV. = -11.5 DEGREES REMARK 500 GLY D 103 C - N - CA ANGL. DEV. = 18.7 DEGREES REMARK 500 HIS D 120 C - N - CA ANGL. DEV. = 33.7 DEGREES REMARK 500 ASP D 133 CB - CG - OD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP D 133 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 GLY D 150 CA - C - O ANGL. DEV. = -17.1 DEGREES REMARK 500 GLY D 150 O - C - N ANGL. DEV. = -28.8 DEGREES REMARK 500 ASP D 159 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP D 159 CB - CG - OD2 ANGL. DEV. = -9.6 DEGREES REMARK 500 LEU D 173 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 LEU D 189 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 66 -158.77 -127.15 REMARK 500 ASN B 106 53.35 -146.20 REMARK 500 HIS B 120 112.14 77.84 REMARK 500 ASP B 137 84.23 -155.21 REMARK 500 LEU B 156 56.41 -99.81 REMARK 500 LEU B 173 -53.24 -153.74 REMARK 500 LEU B 190 -129.90 -105.73 REMARK 500 PHE A 85 118.46 -160.36 REMARK 500 SER A 100 26.88 170.79 REMARK 500 ASN A 106 52.80 -143.19 REMARK 500 ASP A 133 -27.47 -37.44 REMARK 500 LEU A 156 59.73 -105.87 REMARK 500 LEU A 173 -61.81 -141.28 REMARK 500 GLU C 66 -163.25 -111.23 REMARK 500 ASN C 106 58.29 -147.79 REMARK 500 ASN C 109 73.59 39.00 REMARK 500 ASP C 144 48.15 -102.52 REMARK 500 LEU C 156 53.10 -102.42 REMARK 500 LEU C 173 -44.30 -148.98 REMARK 500 SER C 177 31.31 -143.63 REMARK 500 GLU D 62 82.46 -57.67 REMARK 500 GLU D 66 -164.83 -119.57 REMARK 500 CYS D 93 75.29 -117.61 REMARK 500 HIS D 120 133.60 155.80 REMARK 500 ASP D 133 -53.97 -28.23 REMARK 500 LEU D 156 50.67 -97.86 REMARK 500 LEU D 173 -44.91 -136.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 63 ASP B 64 147.88 REMARK 500 ALA B 101 GLY B 102 -35.90 REMARK 500 GLY B 102 GLY B 103 37.04 REMARK 500 ASP A 64 ASP A 65 -45.38 REMARK 500 GLU A 99 SER A 100 -42.90 REMARK 500 GLY A 102 GLY A 103 35.64 REMARK 500 ASP C 64 ASP C 65 -31.51 REMARK 500 ALA C 101 GLY C 102 -39.24 REMARK 500 GLY C 102 GLY C 103 31.73 REMARK 500 GLU D 99 SER D 100 -148.56 REMARK 500 ALA D 101 GLY D 102 -43.18 REMARK 500 GLY D 102 GLY D 103 35.82 REMARK 500 GLY D 119 HIS D 120 72.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 HIS B 120 0.07 SIDE CHAIN REMARK 500 ARG C 95 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 64 12.25 REMARK 500 GLY D 150 -51.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH B 1403 REMARK 615 HOH C 1335 REMARK 615 HOH D 1348 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1326 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 71 NE2 REMARK 620 2 ASP B 137 OD1 108.3 REMARK 620 3 HIS C 71 NE2 108.2 97.9 REMARK 620 4 ASP C 137 OD1 99.4 134.5 106.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B1171 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 88 OH REMARK 620 2 HIS B 104 NE2 93.3 REMARK 620 3 HIS B 166 NE2 80.7 167.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1329 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 89 O REMARK 620 2 ASP B 157 OD1 157.0 REMARK 620 3 ASP B 157 OD2 149.7 53.0 REMARK 620 4 GLY B 160 O 86.6 70.4 123.1 REMARK 620 5 HOH B1378 O 78.5 124.5 71.5 164.9 REMARK 620 6 HOH B1396 O 83.1 95.2 91.2 88.2 87.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1172 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 104 ND1 REMARK 620 2 HIS B 112 ND1 98.4 REMARK 620 3 HIS B 121 ND1 120.5 118.0 REMARK 620 4 ASP B 124 OD1 105.7 102.2 109.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1327 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 71 NE2 REMARK 620 2 ASP A 137 OD1 104.2 REMARK 620 3 ASP A 137 OD2 133.4 53.6 REMARK 620 4 HIS D 71 NE2 118.0 105.0 107.8 REMARK 620 5 ASP D 137 OD1 89.8 135.5 86.1 104.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A1173 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 86 ND1 REMARK 620 2 TYR A 88 OH 157.9 REMARK 620 3 HIS A 104 NE2 89.4 99.7 REMARK 620 4 HIS A 166 NE2 98.2 77.6 165.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1331 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 89 O REMARK 620 2 ASP A 157 OD1 152.9 REMARK 620 3 ASP A 157 OD2 151.6 55.3 REMARK 620 4 ASP A 159 OD1 84.8 92.3 102.2 REMARK 620 5 GLY A 160 O 74.0 78.9 133.1 87.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1174 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 104 ND1 REMARK 620 2 HIS A 112 ND1 111.1 REMARK 620 3 HIS A 121 ND1 110.1 117.8 REMARK 620 4 ASP A 124 OD1 107.9 94.8 114.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C1175 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 86 ND1 REMARK 620 2 TYR C 88 OH 143.2 REMARK 620 3 HIS C 104 NE2 92.3 92.1 REMARK 620 4 HIS C 166 NE2 97.1 80.3 170.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1328 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 89 O REMARK 620 2 ASP C 157 OD1 161.8 REMARK 620 3 ASP C 157 OD2 147.0 51.2 REMARK 620 4 GLY C 160 O 79.1 83.7 130.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1176 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 104 ND1 REMARK 620 2 HIS C 112 ND1 103.8 REMARK 620 3 HIS C 121 ND1 129.4 109.7 REMARK 620 4 ASP C 124 OD1 105.9 98.0 105.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU D1177 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 86 ND1 REMARK 620 2 TYR D 88 OH 144.6 REMARK 620 3 HIS D 104 NE2 62.5 95.0 REMARK 620 4 HIS D 166 NE2 119.0 84.4 177.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D1330 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 89 O REMARK 620 2 ASP D 157 OD1 165.6 REMARK 620 3 ASP D 157 OD2 139.3 52.0 REMARK 620 4 GLY D 160 O 77.0 89.4 138.5 REMARK 620 5 HOH D1392 O 75.0 100.1 85.5 87.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D1178 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 104 ND1 REMARK 620 2 HIS D 112 ND1 96.6 REMARK 620 3 HIS D 121 ND1 133.1 111.5 REMARK 620 4 ASP D 124 OD1 97.8 86.6 119.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 1171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1172 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 1173 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1174 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU C 1175 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 1176 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU D 1177 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 1178 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1326 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1327 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 1328 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1329 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 1330 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1331 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1S4I RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A SOD-LIKE PROTEIN FROM BACILLUS SUBTILIS REMARK 900 CRYSTALLISED IN THE PRESENCE OF ZINC REMARK 900 RELATED ID: 1XTM RELATED DB: PDB REMARK 900 Y88H, P104H MUTANTS DBREF 1XTL B 22 196 UNP O31851 YOJM_BACSU 22 196 DBREF 1XTL A 22 196 UNP O31851 YOJM_BACSU 22 196 DBREF 1XTL C 22 196 UNP O31851 YOJM_BACSU 22 196 DBREF 1XTL D 22 196 UNP O31851 YOJM_BACSU 22 196 SEQADV 1XTL HIS B 104 UNP O31851 PRO 104 ENGINEERED MUTATION SEQADV 1XTL HIS A 104 UNP O31851 PRO 104 ENGINEERED MUTATION SEQADV 1XTL HIS C 104 UNP O31851 PRO 104 ENGINEERED MUTATION SEQADV 1XTL HIS D 104 UNP O31851 PRO 104 ENGINEERED MUTATION SEQRES 1 B 175 LYS PRO PRO ASP PRO PRO ASN ARG VAL PRO GLU LYS LYS SEQRES 2 B 175 VAL VAL GLU THR SER ALA PHE GLY HIS HIS VAL GLN LEU SEQRES 3 B 175 VAL ASN ARG GLU GLY LYS ALA VAL GLY PHE ILE GLU ILE SEQRES 4 B 175 LYS GLU SER ASP ASP GLU GLY LEU ASP ILE HIS ILE SER SEQRES 5 B 175 ALA ASN SER LEU ARG PRO GLY ALA SER LEU GLY PHE HIS SEQRES 6 B 175 ILE TYR GLU LYS GLY SER CYS VAL ARG PRO ASP PHE GLU SEQRES 7 B 175 SER ALA GLY GLY HIS PHE ASN PRO LEU ASN LYS GLU HIS SEQRES 8 B 175 GLY PHE ASN ASN PRO MET GLY HIS HIS ALA GLY ASP LEU SEQRES 9 B 175 PRO ASN LEU GLU VAL GLY ALA ASP GLY LYS VAL ASP VAL SEQRES 10 B 175 ILE MET ASN ALA PRO ASP THR SER LEU LYS LYS GLY SER SEQRES 11 B 175 LYS LEU ASN ILE LEU ASP GLU ASP GLY SER ALA PHE ILE SEQRES 12 B 175 ILE HIS GLU GLN ALA ASP ASP TYR LEU THR ASN PRO SER SEQRES 13 B 175 GLY ASN SER GLY ALA ARG ILE VAL CYS GLY ALA LEU LEU SEQRES 14 B 175 GLY ASN ASN GLU LYS GLN SEQRES 1 A 175 LYS PRO PRO ASP PRO PRO ASN ARG VAL PRO GLU LYS LYS SEQRES 2 A 175 VAL VAL GLU THR SER ALA PHE GLY HIS HIS VAL GLN LEU SEQRES 3 A 175 VAL ASN ARG GLU GLY LYS ALA VAL GLY PHE ILE GLU ILE SEQRES 4 A 175 LYS GLU SER ASP ASP GLU GLY LEU ASP ILE HIS ILE SER SEQRES 5 A 175 ALA ASN SER LEU ARG PRO GLY ALA SER LEU GLY PHE HIS SEQRES 6 A 175 ILE TYR GLU LYS GLY SER CYS VAL ARG PRO ASP PHE GLU SEQRES 7 A 175 SER ALA GLY GLY HIS PHE ASN PRO LEU ASN LYS GLU HIS SEQRES 8 A 175 GLY PHE ASN ASN PRO MET GLY HIS HIS ALA GLY ASP LEU SEQRES 9 A 175 PRO ASN LEU GLU VAL GLY ALA ASP GLY LYS VAL ASP VAL SEQRES 10 A 175 ILE MET ASN ALA PRO ASP THR SER LEU LYS LYS GLY SER SEQRES 11 A 175 LYS LEU ASN ILE LEU ASP GLU ASP GLY SER ALA PHE ILE SEQRES 12 A 175 ILE HIS GLU GLN ALA ASP ASP TYR LEU THR ASN PRO SER SEQRES 13 A 175 GLY ASN SER GLY ALA ARG ILE VAL CYS GLY ALA LEU LEU SEQRES 14 A 175 GLY ASN ASN GLU LYS GLN SEQRES 1 C 175 LYS PRO PRO ASP PRO PRO ASN ARG VAL PRO GLU LYS LYS SEQRES 2 C 175 VAL VAL GLU THR SER ALA PHE GLY HIS HIS VAL GLN LEU SEQRES 3 C 175 VAL ASN ARG GLU GLY LYS ALA VAL GLY PHE ILE GLU ILE SEQRES 4 C 175 LYS GLU SER ASP ASP GLU GLY LEU ASP ILE HIS ILE SER SEQRES 5 C 175 ALA ASN SER LEU ARG PRO GLY ALA SER LEU GLY PHE HIS SEQRES 6 C 175 ILE TYR GLU LYS GLY SER CYS VAL ARG PRO ASP PHE GLU SEQRES 7 C 175 SER ALA GLY GLY HIS PHE ASN PRO LEU ASN LYS GLU HIS SEQRES 8 C 175 GLY PHE ASN ASN PRO MET GLY HIS HIS ALA GLY ASP LEU SEQRES 9 C 175 PRO ASN LEU GLU VAL GLY ALA ASP GLY LYS VAL ASP VAL SEQRES 10 C 175 ILE MET ASN ALA PRO ASP THR SER LEU LYS LYS GLY SER SEQRES 11 C 175 LYS LEU ASN ILE LEU ASP GLU ASP GLY SER ALA PHE ILE SEQRES 12 C 175 ILE HIS GLU GLN ALA ASP ASP TYR LEU THR ASN PRO SER SEQRES 13 C 175 GLY ASN SER GLY ALA ARG ILE VAL CYS GLY ALA LEU LEU SEQRES 14 C 175 GLY ASN ASN GLU LYS GLN SEQRES 1 D 175 LYS PRO PRO ASP PRO PRO ASN ARG VAL PRO GLU LYS LYS SEQRES 2 D 175 VAL VAL GLU THR SER ALA PHE GLY HIS HIS VAL GLN LEU SEQRES 3 D 175 VAL ASN ARG GLU GLY LYS ALA VAL GLY PHE ILE GLU ILE SEQRES 4 D 175 LYS GLU SER ASP ASP GLU GLY LEU ASP ILE HIS ILE SER SEQRES 5 D 175 ALA ASN SER LEU ARG PRO GLY ALA SER LEU GLY PHE HIS SEQRES 6 D 175 ILE TYR GLU LYS GLY SER CYS VAL ARG PRO ASP PHE GLU SEQRES 7 D 175 SER ALA GLY GLY HIS PHE ASN PRO LEU ASN LYS GLU HIS SEQRES 8 D 175 GLY PHE ASN ASN PRO MET GLY HIS HIS ALA GLY ASP LEU SEQRES 9 D 175 PRO ASN LEU GLU VAL GLY ALA ASP GLY LYS VAL ASP VAL SEQRES 10 D 175 ILE MET ASN ALA PRO ASP THR SER LEU LYS LYS GLY SER SEQRES 11 D 175 LYS LEU ASN ILE LEU ASP GLU ASP GLY SER ALA PHE ILE SEQRES 12 D 175 ILE HIS GLU GLN ALA ASP ASP TYR LEU THR ASN PRO SER SEQRES 13 D 175 GLY ASN SER GLY ALA ARG ILE VAL CYS GLY ALA LEU LEU SEQRES 14 D 175 GLY ASN ASN GLU LYS GLN HET CU B1171 1 HET ZN B1172 1 HET ZN B1326 1 HET ZN B1329 1 HET CU A1173 1 HET ZN A1174 1 HET ZN A1327 1 HET ZN A1331 1 HET CU C1175 1 HET ZN C1176 1 HET ZN C1328 1 HET CU D1177 1 HET ZN D1178 1 HET ZN D1330 1 HETNAM CU COPPER (II) ION HETNAM ZN ZINC ION FORMUL 5 CU 4(CU 2+) FORMUL 6 ZN 10(ZN 2+) FORMUL 19 HOH *307(H2 O) SHEET 1 A 8 ASP B 124 GLU B 129 0 SHEET 2 A 8 SER B 82 TYR B 88 -1 N LEU B 83 O LEU B 128 SHEET 3 A 8 SER B 161 HIS B 166 -1 O ALA B 162 N TYR B 88 SHEET 4 A 8 ARG B 183 LEU B 189 -1 O LEU B 189 N SER B 161 SHEET 5 A 8 GLY B 42 ASN B 49 -1 N VAL B 48 O CYS B 186 SHEET 6 A 8 ALA B 54 GLU B 62 -1 O VAL B 55 N LEU B 47 SHEET 7 A 8 LEU B 68 ALA B 74 -1 O SER B 73 N PHE B 57 SHEET 8 A 8 VAL B 136 ALA B 142 -1 O ALA B 142 N LEU B 68 SHEET 1 B 8 ASP A 124 GLU A 129 0 SHEET 2 B 8 SER A 82 TYR A 88 -1 N LEU A 83 O LEU A 128 SHEET 3 B 8 SER A 161 HIS A 166 -1 O ALA A 162 N TYR A 88 SHEET 4 B 8 ARG A 183 LEU A 189 -1 O LEU A 189 N SER A 161 SHEET 5 B 8 GLY A 42 ASN A 49 -1 N VAL A 48 O CYS A 186 SHEET 6 B 8 ALA A 54 GLU A 62 -1 O ILE A 60 N GLY A 42 SHEET 7 B 8 LEU A 68 ALA A 74 -1 O HIS A 71 N GLU A 59 SHEET 8 B 8 VAL A 136 ALA A 142 -1 O ALA A 142 N LEU A 68 SHEET 1 C 7 PHE C 85 TYR C 88 0 SHEET 2 C 7 SER C 161 HIS C 166 -1 O ALA C 162 N TYR C 88 SHEET 3 C 7 ARG C 183 LEU C 189 -1 O GLY C 187 N PHE C 163 SHEET 4 C 7 GLY C 42 ASN C 49 -1 N VAL C 48 O CYS C 186 SHEET 5 C 7 ALA C 54 GLU C 62 -1 O ILE C 60 N GLY C 42 SHEET 6 C 7 LEU C 68 ALA C 74 -1 O ASP C 69 N LYS C 61 SHEET 7 C 7 VAL C 136 ALA C 142 -1 O MET C 140 N ILE C 70 SHEET 1 D 2 SER C 82 LEU C 83 0 SHEET 2 D 2 LEU C 128 GLU C 129 -1 O LEU C 128 N LEU C 83 SHEET 1 E 7 PHE D 85 TYR D 88 0 SHEET 2 E 7 SER D 161 HIS D 166 -1 O ILE D 164 N HIS D 86 SHEET 3 E 7 ARG D 183 LEU D 189 -1 O LEU D 189 N SER D 161 SHEET 4 E 7 GLY D 42 ASN D 49 -1 N VAL D 48 O CYS D 186 SHEET 5 E 7 ALA D 54 LYS D 61 -1 O VAL D 55 N LEU D 47 SHEET 6 E 7 LEU D 68 ALA D 74 -1 O SER D 73 N PHE D 57 SHEET 7 E 7 VAL D 136 ALA D 142 -1 O MET D 140 N ILE D 70 SHEET 1 F 2 SER D 82 LEU D 83 0 SHEET 2 F 2 LEU D 128 GLU D 129 -1 O LEU D 128 N LEU D 83 SSBOND 1 CYS B 93 CYS B 186 1555 1555 2.01 SSBOND 2 CYS A 93 CYS A 186 1555 1555 2.01 SSBOND 3 CYS C 93 CYS C 186 1555 1555 2.03 SSBOND 4 CYS D 93 CYS D 186 1555 1555 2.02 LINK NE2 HIS B 71 ZN ZN B1326 1555 1555 2.28 LINK OH TYR B 88 CU CU B1171 1555 1555 2.71 LINK O GLU B 89 ZN ZN B1329 1555 1555 2.59 LINK NE2 HIS B 104 CU CU B1171 1555 1555 2.01 LINK ND1 HIS B 104 ZN ZN B1172 1555 1555 2.18 LINK ND1 HIS B 112 ZN ZN B1172 1555 1555 2.34 LINK ND1 HIS B 121 ZN ZN B1172 1555 1555 2.04 LINK OD1 ASP B 124 ZN ZN B1172 1555 1555 2.11 LINK OD1 ASP B 137 ZN ZN B1326 1555 1555 2.02 LINK OD1 ASP B 157 ZN ZN B1329 1555 1555 2.53 LINK OD2 ASP B 157 ZN ZN B1329 1555 1555 2.44 LINK O GLY B 160 ZN ZN B1329 1555 1555 2.40 LINK NE2 HIS B 166 CU CU B1171 1555 1555 2.22 LINK ZN ZN B1326 NE2 HIS C 71 1555 1556 2.14 LINK ZN ZN B1326 OD1 ASP C 137 1555 1556 1.96 LINK ZN ZN B1329 O HOH B1378 1555 1555 2.43 LINK ZN ZN B1329 O HOH B1396 1555 1555 2.48 LINK NE2 HIS A 71 ZN ZN A1327 1555 1555 2.19 LINK ND1 HIS A 86 CU CU A1173 1555 1555 2.23 LINK OH TYR A 88 CU CU A1173 1555 1555 2.74 LINK O GLU A 89 ZN ZN A1331 1555 1555 2.76 LINK NE2 HIS A 104 CU CU A1173 1555 1555 2.13 LINK ND1 HIS A 104 ZN ZN A1174 1555 1555 1.76 LINK ND1 HIS A 112 ZN ZN A1174 1555 1555 2.33 LINK ND1 HIS A 121 ZN ZN A1174 1555 1555 2.09 LINK OD1 ASP A 124 ZN ZN A1174 1555 1555 1.99 LINK OD1 ASP A 137 ZN ZN A1327 1555 1555 2.05 LINK OD2 ASP A 137 ZN ZN A1327 1555 1555 2.65 LINK OD1 ASP A 157 ZN ZN A1331 1555 1555 2.45 LINK OD2 ASP A 157 ZN ZN A1331 1555 1555 2.52 LINK OD1 ASP A 159 ZN ZN A1331 1555 1555 2.34 LINK O GLY A 160 ZN ZN A1331 1555 1555 2.55 LINK NE2 HIS A 166 CU CU A1173 1555 1555 2.06 LINK ZN ZN A1327 NE2 HIS D 71 1555 1554 2.03 LINK ZN ZN A1327 OD1 ASP D 137 1555 1554 1.99 LINK ND1 HIS C 86 CU CU C1175 1555 1555 2.51 LINK OH TYR C 88 CU CU C1175 1555 1555 2.32 LINK O GLU C 89 ZN ZN C1328 1555 1555 2.57 LINK NE2 HIS C 104 CU CU C1175 1555 1555 1.89 LINK ND1 HIS C 104 ZN ZN C1176 1555 1555 2.11 LINK ND1 HIS C 112 ZN ZN C1176 1555 1555 1.97 LINK ND1 HIS C 121 ZN ZN C1176 1555 1555 2.32 LINK OD1 ASP C 124 ZN ZN C1176 1555 1555 2.17 LINK OD1 ASP C 157 ZN ZN C1328 1555 1555 2.53 LINK OD2 ASP C 157 ZN ZN C1328 1555 1555 2.56 LINK O GLY C 160 ZN ZN C1328 1555 1555 2.37 LINK NE2 HIS C 166 CU CU C1175 1555 1555 2.16 LINK ND1 HIS D 86 CU CU D1177 1555 1555 2.45 LINK OH TYR D 88 CU CU D1177 1555 1555 2.19 LINK O GLU D 89 ZN ZN D1330 1555 1555 2.49 LINK NE2 HIS D 104 CU CU D1177 1555 1555 2.00 LINK ND1 HIS D 104 ZN ZN D1178 1555 1555 2.27 LINK ND1 HIS D 112 ZN ZN D1178 1555 1555 1.93 LINK ND1 HIS D 121 ZN ZN D1178 1555 1555 2.01 LINK OD1 ASP D 124 ZN ZN D1178 1555 1555 2.07 LINK OD1 ASP D 157 ZN ZN D1330 1555 1555 2.43 LINK OD2 ASP D 157 ZN ZN D1330 1555 1555 2.62 LINK O GLY D 160 ZN ZN D1330 1555 1555 2.53 LINK NE2 HIS D 166 CU CU D1177 1555 1555 2.06 LINK ZN ZN D1330 O HOH D1392 1555 1555 2.72 CISPEP 1 ASP B 64 ASP B 65 0 -5.27 CISPEP 2 ASP B 65 GLU B 66 0 -11.75 CISPEP 3 ARG B 95 PRO B 96 0 2.64 CISPEP 4 SER B 100 ALA B 101 0 -5.72 CISPEP 5 ASN B 175 PRO B 176 0 -2.09 CISPEP 6 ARG A 95 PRO A 96 0 6.57 CISPEP 7 SER A 100 ALA A 101 0 -9.77 CISPEP 8 ALA A 101 GLY A 102 0 -26.45 CISPEP 9 GLY A 119 HIS A 120 0 -1.51 CISPEP 10 ASN A 175 PRO A 176 0 0.24 CISPEP 11 ASP C 65 GLU C 66 0 -19.09 CISPEP 12 ARG C 95 PRO C 96 0 -1.10 CISPEP 13 SER C 100 ALA C 101 0 -21.51 CISPEP 14 GLY C 119 HIS C 120 0 2.06 CISPEP 15 ASN C 175 PRO C 176 0 -6.77 CISPEP 16 ASP D 64 ASP D 65 0 -26.15 CISPEP 17 ASP D 65 GLU D 66 0 -14.53 CISPEP 18 ARG D 95 PRO D 96 0 -1.86 CISPEP 19 SER D 100 ALA D 101 0 -15.89 CISPEP 20 ASN D 175 PRO D 176 0 -7.86 SITE 1 AC1 4 HIS B 86 TYR B 88 HIS B 104 HIS B 166 SITE 1 AC2 4 HIS B 104 HIS B 112 HIS B 121 ASP B 124 SITE 1 AC3 4 HIS A 86 TYR A 88 HIS A 104 HIS A 166 SITE 1 AC4 4 HIS A 104 HIS A 112 HIS A 121 ASP A 124 SITE 1 AC5 4 HIS C 86 TYR C 88 HIS C 104 HIS C 166 SITE 1 AC6 5 HIS C 104 HIS C 112 HIS C 121 ASP C 124 SITE 2 AC6 5 PRO C 176 SITE 1 AC7 4 HIS D 86 TYR D 88 HIS D 104 HIS D 166 SITE 1 AC8 5 HIS D 104 HIS D 112 HIS D 121 ASP D 124 SITE 2 AC8 5 PRO D 176 SITE 1 AC9 4 HIS B 71 ASP B 137 HIS C 71 ASP C 137 SITE 1 BC1 4 HIS A 71 ASP A 137 HIS D 71 ASP D 137 SITE 1 BC2 4 GLU C 89 ASP C 157 ASP C 159 GLY C 160 SITE 1 BC3 6 GLU B 89 ASP B 157 ASP B 159 GLY B 160 SITE 2 BC3 6 HOH B1378 HOH B1396 SITE 1 BC4 5 GLU D 89 ASP D 157 ASP D 159 GLY D 160 SITE 2 BC4 5 HOH D1392 SITE 1 BC5 4 GLU A 89 ASP A 157 ASP A 159 GLY A 160 CRYST1 52.147 56.586 59.118 78.24 89.91 85.47 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019177 -0.001518 0.000285 0.00000 SCALE2 0.000000 0.017728 -0.003700 0.00000 SCALE3 0.000000 0.000000 0.017280 0.00000