HEADER CYTOKINE, HORMONE/GROWTH FACTOR RECEPTOR25-OCT-04 1XU1 TITLE THE CRYSTAL STRUCTURE OF APRIL BOUND TO TACI COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 13; COMPND 3 CHAIN: A, B, D; COMPND 4 FRAGMENT: TNF DOMAIN OF MURINE APRIL; COMPND 5 SYNONYM: A PROLIFERATION-INDUCING LIGAND, APRIL, TNFSF13, TALL-2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 13B; COMPND 9 CHAIN: R, S, T; COMPND 10 FRAGMENT: TACI CRD2; COMPND 11 SYNONYM: TRANSMEMBRANE ACTIVATOR AND CAML INTERACTOR, TNFRSF13B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: TNFSF13, APRIL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-32A (MODIFIED); SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: TNFRSF13B, TACI; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: ORIGAMI (DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET32A (MODIFIED) KEYWDS TNFSF, CYTOKINE, CRD, RECEPTOR, JELLY-ROLL, CYSTEINE-RICH, HORMONE- KEYWDS 2 GROWTH FACTOR RECEPTOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.G.HYMOWITZ,D.R.PATEL,H.J.A.WALLWEBER,S.RUNYON,M.YAN,J.YIN, AUTHOR 2 S.K.SHRIVER,N.C.GORDON,B.PAN,N.J.SKELTON,R.F.KELLEY,M.A.STAROVASNIK REVDAT 6 23-AUG-23 1XU1 1 REMARK LINK REVDAT 5 13-JUL-11 1XU1 1 VERSN REVDAT 4 24-FEB-09 1XU1 1 VERSN REVDAT 3 22-MAR-05 1XU1 2 JRNL REVDAT 2 23-NOV-04 1XU1 1 JRNL REVDAT 1 09-NOV-04 1XU1 0 JRNL AUTH S.G.HYMOWITZ,D.R.PATEL,H.J.A.WALLWEBER,S.RUNYON,M.YAN,J.YIN, JRNL AUTH 2 S.K.SHRIVER,N.C.GORDON,B.PAN,N.J.SKELTON,R.F.KELLEY, JRNL AUTH 3 M.A.STAROVASNIK JRNL TITL STRUCTURES OF APRIL-RECEPTOR COMPLEXES: LIKE BCMA, TACI JRNL TITL 2 EMPLOYS ONLY A SINGLE CYSTEINE-RICH DOMAIN FOR HIGH-AFFINITY JRNL TITL 3 LIGAND BINDING JRNL REF J.BIOL.CHEM. V. 280 7218 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15542592 JRNL DOI 10.1074/JBC.M411714200 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 40069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4449 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 25 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2318 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1700 REMARK 3 BIN FREE R VALUE SET COUNT : 244 REMARK 3 BIN FREE R VALUE : 0.2060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4149 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 130 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 21.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.39000 REMARK 3 B22 (A**2) : -0.37000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.142 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.458 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4248 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3824 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5744 ; 1.216 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8872 ; 0.739 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 518 ; 6.509 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 628 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4700 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 915 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 558 ; 0.177 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4174 ; 0.244 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2724 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 102 ; 0.117 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 3 ; 0.057 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 59 ; 0.242 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.216 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2599 ; 2.558 ; 2.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4191 ; 4.203 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1649 ; 3.423 ; 2.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1553 ; 5.266 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 105 A 241 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3589 -9.6976 22.7869 REMARK 3 T TENSOR REMARK 3 T11: 0.0601 T22: 0.0156 REMARK 3 T33: 0.0501 T12: -0.0171 REMARK 3 T13: -0.0161 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 1.0007 L22: 0.8469 REMARK 3 L33: 1.0338 L12: -0.1139 REMARK 3 L13: 0.1119 L23: -0.3545 REMARK 3 S TENSOR REMARK 3 S11: 0.0194 S12: 0.0564 S13: -0.1639 REMARK 3 S21: -0.0922 S22: 0.0401 S23: 0.0285 REMARK 3 S31: 0.1407 S32: -0.0234 S33: -0.0595 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 105 B 241 REMARK 3 ORIGIN FOR THE GROUP (A): 20.7125 10.9212 19.6245 REMARK 3 T TENSOR REMARK 3 T11: 0.0262 T22: 0.0378 REMARK 3 T33: 0.0401 T12: -0.0201 REMARK 3 T13: 0.0103 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.0740 L22: 1.5522 REMARK 3 L33: 1.7888 L12: -0.0506 REMARK 3 L13: 0.2704 L23: 0.0474 REMARK 3 S TENSOR REMARK 3 S11: 0.0043 S12: 0.0929 S13: 0.1025 REMARK 3 S21: -0.0756 S22: 0.0052 S23: -0.1328 REMARK 3 S31: -0.1635 S32: 0.1757 S33: -0.0095 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 105 D 241 REMARK 3 ORIGIN FOR THE GROUP (A): -0.8560 10.1240 27.7306 REMARK 3 T TENSOR REMARK 3 T11: 0.0288 T22: 0.0485 REMARK 3 T33: 0.0676 T12: 0.0324 REMARK 3 T13: 0.0024 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 1.4153 L22: 1.3993 REMARK 3 L33: 2.0180 L12: 0.1615 REMARK 3 L13: 0.5466 L23: -0.2660 REMARK 3 S TENSOR REMARK 3 S11: 0.0085 S12: -0.1038 S13: 0.0576 REMARK 3 S21: 0.0095 S22: 0.0178 S23: 0.2303 REMARK 3 S31: -0.1039 S32: -0.2699 S33: -0.0263 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : R 68 R 105 REMARK 3 ORIGIN FOR THE GROUP (A): 28.0782 -14.3506 38.1989 REMARK 3 T TENSOR REMARK 3 T11: 0.1606 T22: 0.1324 REMARK 3 T33: 0.2156 T12: 0.0375 REMARK 3 T13: -0.0441 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 3.9522 L22: 3.4718 REMARK 3 L33: 2.5252 L12: -2.6181 REMARK 3 L13: 0.8857 L23: -0.3780 REMARK 3 S TENSOR REMARK 3 S11: -0.1034 S12: -0.2337 S13: -0.2936 REMARK 3 S21: 0.1232 S22: 0.0452 S23: -0.4300 REMARK 3 S31: 0.3944 S32: 0.4488 S33: 0.0582 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : S 71 S 106 REMARK 3 ORIGIN FOR THE GROUP (A): 25.7274 21.1535 40.5790 REMARK 3 T TENSOR REMARK 3 T11: 0.2729 T22: 0.1475 REMARK 3 T33: 0.1614 T12: -0.0829 REMARK 3 T13: -0.0555 T23: -0.0266 REMARK 3 L TENSOR REMARK 3 L11: 2.6969 L22: 3.7454 REMARK 3 L33: 6.8817 L12: 2.0935 REMARK 3 L13: 2.8904 L23: -0.0565 REMARK 3 S TENSOR REMARK 3 S11: -0.0971 S12: -0.2887 S13: 0.4499 REMARK 3 S21: 0.5003 S22: -0.2580 S23: -0.1705 REMARK 3 S31: -0.7867 S32: 0.2131 S33: 0.3550 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : T 71 T 109 REMARK 3 ORIGIN FOR THE GROUP (A): -0.0883 2.2934 52.1092 REMARK 3 T TENSOR REMARK 3 T11: 0.0867 T22: 0.1915 REMARK 3 T33: 0.0944 T12: 0.0238 REMARK 3 T13: 0.0155 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.7283 L22: 0.7620 REMARK 3 L33: 10.6199 L12: -0.1565 REMARK 3 L13: 0.7814 L23: 0.8211 REMARK 3 S TENSOR REMARK 3 S11: -0.0210 S12: -0.2302 S13: -0.0780 REMARK 3 S21: 0.1936 S22: -0.0993 S23: 0.1578 REMARK 3 S31: 0.1127 S32: -0.8822 S33: 0.1203 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1XU1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1000030769. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98040 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44579 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.34700 REMARK 200 R SYM FOR SHELL (I) : 0.34700 REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: APRIL ALONE, PDBCODE 1U5Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: WELL SOLUTION: 70% MPD, 0.1 M HEPES, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.66950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.13400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.91950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.13400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.66950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.91950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASSYMMETRIC UNIT CONTAINS THE BIOLOGICALLY RELEVANT REMARK 300 ASSEMBLY OF A TRIMER OF APRIL BOUND TO 3 COPIES OF TACI REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, R, S, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 104 REMARK 465 LYS B 104 REMARK 465 LYS D 104 REMARK 465 ASN R 106 REMARK 465 LYS R 107 REMARK 465 LEU R 108 REMARK 465 ARG R 109 REMARK 465 SER S 68 REMARK 465 LEU S 69 REMARK 465 SER S 70 REMARK 465 LYS S 107 REMARK 465 LEU S 108 REMARK 465 ARG S 109 REMARK 465 SER T 68 REMARK 465 LEU T 69 REMARK 465 SER T 70 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG D 180 CG CD NE CZ NH1 NH2 REMARK 470 ARG T 72 CG CD NE CZ NH1 NH2 REMARK 470 GLN T 75 CG CD OE1 NE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG S 72 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 186 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 186 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 221 48.43 -76.94 REMARK 500 PRO B 221 46.77 -75.05 REMARK 500 ASP D 121 44.22 -100.57 REMARK 500 PRO D 221 48.52 -76.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 101 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 106 NE2 REMARK 620 2 HOH A 242 O 87.5 REMARK 620 3 HIS B 106 NE2 93.8 91.6 REMARK 620 4 HIS D 106 NE2 92.8 169.9 98.5 REMARK 620 5 HOH D 253 O 177.9 93.9 87.7 85.6 REMARK 620 6 HOH D 281 O 96.5 78.1 165.0 91.9 82.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U5X RELATED DB: PDB REMARK 900 APRIL REMARK 900 RELATED ID: 1U5Y RELATED DB: PDB REMARK 900 APRIL REMARK 900 RELATED ID: 1U5Z RELATED DB: PDB REMARK 900 APRIL REMARK 900 RELATED ID: 1XU2 RELATED DB: PDB REMARK 900 RELATED ID: 1XUT RELATED DB: PDB DBREF 1XU1 A 104 241 UNP Q9D777 TNF13_MOUSE 104 241 DBREF 1XU1 B 104 241 UNP Q9D777 TNF13_MOUSE 104 241 DBREF 1XU1 D 104 241 UNP Q9D777 TNF13_MOUSE 104 241 DBREF 1XU1 R 68 109 UNP O14836 TR13B_HUMAN 68 109 DBREF 1XU1 S 68 109 UNP O14836 TR13B_HUMAN 68 109 DBREF 1XU1 T 68 109 UNP O14836 TR13B_HUMAN 68 109 SEQRES 1 A 138 LYS LYS HIS SER VAL LEU HIS LEU VAL PRO VAL ASN ILE SEQRES 2 A 138 THR SER LYS ALA ASP SER ASP VAL THR GLU VAL MET TRP SEQRES 3 A 138 GLN PRO VAL LEU ARG ARG GLY ARG GLY LEU GLU ALA GLN SEQRES 4 A 138 GLY ASP ILE VAL ARG VAL TRP ASP THR GLY ILE TYR LEU SEQRES 5 A 138 LEU TYR SER GLN VAL LEU PHE HIS ASP VAL THR PHE THR SEQRES 6 A 138 MET GLY GLN VAL VAL SER ARG GLU GLY GLN GLY ARG ARG SEQRES 7 A 138 GLU THR LEU PHE ARG CYS ILE ARG SER MET PRO SER ASP SEQRES 8 A 138 PRO ASP ARG ALA TYR ASN SER CYS TYR SER ALA GLY VAL SEQRES 9 A 138 PHE HIS LEU HIS GLN GLY ASP ILE ILE THR VAL LYS ILE SEQRES 10 A 138 PRO ARG ALA ASN ALA LYS LEU SER LEU SER PRO HIS GLY SEQRES 11 A 138 THR PHE LEU GLY PHE VAL LYS LEU SEQRES 1 B 138 LYS LYS HIS SER VAL LEU HIS LEU VAL PRO VAL ASN ILE SEQRES 2 B 138 THR SER LYS ALA ASP SER ASP VAL THR GLU VAL MET TRP SEQRES 3 B 138 GLN PRO VAL LEU ARG ARG GLY ARG GLY LEU GLU ALA GLN SEQRES 4 B 138 GLY ASP ILE VAL ARG VAL TRP ASP THR GLY ILE TYR LEU SEQRES 5 B 138 LEU TYR SER GLN VAL LEU PHE HIS ASP VAL THR PHE THR SEQRES 6 B 138 MET GLY GLN VAL VAL SER ARG GLU GLY GLN GLY ARG ARG SEQRES 7 B 138 GLU THR LEU PHE ARG CYS ILE ARG SER MET PRO SER ASP SEQRES 8 B 138 PRO ASP ARG ALA TYR ASN SER CYS TYR SER ALA GLY VAL SEQRES 9 B 138 PHE HIS LEU HIS GLN GLY ASP ILE ILE THR VAL LYS ILE SEQRES 10 B 138 PRO ARG ALA ASN ALA LYS LEU SER LEU SER PRO HIS GLY SEQRES 11 B 138 THR PHE LEU GLY PHE VAL LYS LEU SEQRES 1 D 138 LYS LYS HIS SER VAL LEU HIS LEU VAL PRO VAL ASN ILE SEQRES 2 D 138 THR SER LYS ALA ASP SER ASP VAL THR GLU VAL MET TRP SEQRES 3 D 138 GLN PRO VAL LEU ARG ARG GLY ARG GLY LEU GLU ALA GLN SEQRES 4 D 138 GLY ASP ILE VAL ARG VAL TRP ASP THR GLY ILE TYR LEU SEQRES 5 D 138 LEU TYR SER GLN VAL LEU PHE HIS ASP VAL THR PHE THR SEQRES 6 D 138 MET GLY GLN VAL VAL SER ARG GLU GLY GLN GLY ARG ARG SEQRES 7 D 138 GLU THR LEU PHE ARG CYS ILE ARG SER MET PRO SER ASP SEQRES 8 D 138 PRO ASP ARG ALA TYR ASN SER CYS TYR SER ALA GLY VAL SEQRES 9 D 138 PHE HIS LEU HIS GLN GLY ASP ILE ILE THR VAL LYS ILE SEQRES 10 D 138 PRO ARG ALA ASN ALA LYS LEU SER LEU SER PRO HIS GLY SEQRES 11 D 138 THR PHE LEU GLY PHE VAL LYS LEU SEQRES 1 R 42 SER LEU SER CYS ARG LYS GLU GLN GLY LYS PHE TYR ASP SEQRES 2 R 42 HIS LEU LEU ARG ASP CYS ILE SER CYS ALA SER ILE CYS SEQRES 3 R 42 GLY GLN HIS PRO LYS GLN CYS ALA TYR PHE CYS GLU ASN SEQRES 4 R 42 LYS LEU ARG SEQRES 1 S 42 SER LEU SER CYS ARG LYS GLU GLN GLY LYS PHE TYR ASP SEQRES 2 S 42 HIS LEU LEU ARG ASP CYS ILE SER CYS ALA SER ILE CYS SEQRES 3 S 42 GLY GLN HIS PRO LYS GLN CYS ALA TYR PHE CYS GLU ASN SEQRES 4 S 42 LYS LEU ARG SEQRES 1 T 42 SER LEU SER CYS ARG LYS GLU GLN GLY LYS PHE TYR ASP SEQRES 2 T 42 HIS LEU LEU ARG ASP CYS ILE SER CYS ALA SER ILE CYS SEQRES 3 T 42 GLY GLN HIS PRO LYS GLN CYS ALA TYR PHE CYS GLU ASN SEQRES 4 T 42 LYS LEU ARG HET NI A 101 1 HETNAM NI NICKEL (II) ION FORMUL 7 NI NI 2+ FORMUL 8 HOH *130(H2 O) HELIX 1 1 ASP B 194 ARG B 197 5 4 HELIX 2 2 ARG R 72 GLN R 75 5 4 HELIX 3 3 ALA R 90 CYS R 93 5 4 HELIX 4 4 PRO R 97 GLN R 99 5 3 HELIX 5 5 CYS R 100 GLU R 105 1 6 HELIX 6 6 ARG S 72 GLN S 75 5 4 HELIX 7 7 CYS S 89 CYS S 93 1 5 HELIX 8 8 PRO S 97 GLN S 99 5 3 HELIX 9 9 CYS S 100 ASN S 106 1 7 HELIX 10 10 ARG T 72 GLN T 75 5 4 HELIX 11 11 ALA T 90 ILE T 92 5 3 HELIX 12 12 PRO T 97 GLN T 99 5 3 HELIX 13 13 CYS T 100 LYS T 107 1 8 SHEET 1 A 5 LEU A 139 GLN A 142 0 SHEET 2 A 5 ILE A 145 VAL A 148 -1 O ARG A 147 N GLU A 140 SHEET 3 A 5 ILE A 215 ILE A 220 -1 O ILE A 216 N VAL A 146 SHEET 4 A 5 THR A 168 GLY A 177 -1 N VAL A 172 O LYS A 219 SHEET 5 A 5 ARG A 180 SER A 190 -1 O ARG A 189 N MET A 169 SHEET 1 B 8 LEU A 139 GLN A 142 0 SHEET 2 B 8 ILE A 145 VAL A 148 -1 O ARG A 147 N GLU A 140 SHEET 3 B 8 ILE A 215 ILE A 220 -1 O ILE A 216 N VAL A 146 SHEET 4 B 8 THR A 125 ARG A 135 -1 N THR A 125 O ILE A 220 SHEET 5 B 8 VAL A 108 THR A 117 -1 N THR A 117 O GLU A 126 SHEET 6 B 8 PHE A 235 LYS A 240 -1 O LEU A 236 N LEU A 111 SHEET 7 B 8 GLY A 152 HIS A 163 -1 N LEU A 155 O VAL A 239 SHEET 8 B 8 TYR A 199 LEU A 210 -1 O GLY A 206 N LEU A 156 SHEET 1 C 5 LEU B 139 GLN B 142 0 SHEET 2 C 5 ILE B 145 VAL B 148 -1 O ARG B 147 N GLU B 140 SHEET 3 C 5 ILE B 215 ILE B 220 -1 O ILE B 216 N VAL B 146 SHEET 4 C 5 THR B 168 GLY B 177 -1 N VAL B 172 O LYS B 219 SHEET 5 C 5 ARG B 180 SER B 190 -1 O ARG B 189 N MET B 169 SHEET 1 D 8 LEU B 139 GLN B 142 0 SHEET 2 D 8 ILE B 145 VAL B 148 -1 O ARG B 147 N GLU B 140 SHEET 3 D 8 ILE B 215 ILE B 220 -1 O ILE B 216 N VAL B 146 SHEET 4 D 8 THR B 125 ARG B 135 -1 N THR B 125 O ILE B 220 SHEET 5 D 8 VAL B 108 THR B 117 -1 N HIS B 110 O VAL B 132 SHEET 6 D 8 PHE B 235 LYS B 240 -1 O LEU B 236 N LEU B 111 SHEET 7 D 8 GLY B 152 HIS B 163 -1 N LEU B 155 O VAL B 239 SHEET 8 D 8 TYR B 199 LEU B 210 -1 O LEU B 210 N GLY B 152 SHEET 1 E 5 LEU D 139 GLN D 142 0 SHEET 2 E 5 ILE D 145 VAL D 148 -1 O ARG D 147 N GLU D 140 SHEET 3 E 5 ILE D 215 ILE D 220 -1 O ILE D 216 N VAL D 146 SHEET 4 E 5 THR D 168 GLU D 176 -1 N GLU D 176 O ILE D 215 SHEET 5 E 5 ARG D 181 SER D 190 -1 O PHE D 185 N VAL D 173 SHEET 1 F 8 LEU D 139 GLN D 142 0 SHEET 2 F 8 ILE D 145 VAL D 148 -1 O ARG D 147 N GLU D 140 SHEET 3 F 8 ILE D 215 ILE D 220 -1 O ILE D 216 N VAL D 146 SHEET 4 F 8 THR D 125 ARG D 135 -1 N THR D 125 O ILE D 220 SHEET 5 F 8 VAL D 108 THR D 117 -1 N ASN D 115 O MET D 128 SHEET 6 F 8 PHE D 235 LYS D 240 -1 O LEU D 236 N LEU D 111 SHEET 7 F 8 GLY D 152 HIS D 163 -1 N LEU D 155 O VAL D 239 SHEET 8 F 8 TYR D 199 LEU D 210 -1 O LEU D 210 N GLY D 152 SHEET 1 G 2 LYS R 77 ASP R 80 0 SHEET 2 G 2 ASP R 85 SER R 88 -1 O ILE R 87 N PHE R 78 SHEET 1 H 2 LYS S 77 ASP S 80 0 SHEET 2 H 2 ASP S 85 SER S 88 -1 O ILE S 87 N PHE S 78 SHEET 1 I 2 LYS T 77 ASP T 80 0 SHEET 2 I 2 ASP T 85 SER T 88 -1 O ASP T 85 N ASP T 80 SSBOND 1 CYS A 187 CYS A 202 1555 1555 2.04 SSBOND 2 CYS B 187 CYS B 202 1555 1555 2.04 SSBOND 3 CYS D 187 CYS D 202 1555 1555 2.04 SSBOND 4 CYS R 71 CYS R 86 1555 1555 2.06 SSBOND 5 CYS R 89 CYS R 100 1555 1555 2.09 SSBOND 6 CYS R 93 CYS R 104 1555 1555 2.05 SSBOND 7 CYS S 71 CYS S 86 1555 1555 2.05 SSBOND 8 CYS S 89 CYS S 100 1555 1555 2.08 SSBOND 9 CYS S 93 CYS S 104 1555 1555 2.05 SSBOND 10 CYS T 71 CYS T 86 1555 1555 2.05 SSBOND 11 CYS T 89 CYS T 100 1555 1555 2.10 SSBOND 12 CYS T 93 CYS T 104 1555 1555 2.05 LINK NI NI A 101 NE2 HIS A 106 1555 1555 2.29 LINK NI NI A 101 O HOH A 242 1555 1555 2.53 LINK NI NI A 101 NE2 HIS B 106 1555 1555 2.22 LINK NI NI A 101 NE2 HIS D 106 1555 1555 2.24 LINK NI NI A 101 O HOH D 253 1555 1555 2.63 LINK NI NI A 101 O HOH D 281 1555 1555 2.45 SITE 1 AC1 6 HIS A 106 HOH A 242 HIS B 106 HIS D 106 SITE 2 AC1 6 HOH D 253 HOH D 281 CRYST1 59.339 91.839 102.268 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016852 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010889 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009778 0.00000