HEADER BIOSYNTHETIC PROTEIN 26-OCT-04 1XUA TITLE STRUCTURE AND FUNCTION OF THE PHENAZINE BIOSYNTHETIC PROTEIN PHZF FROM TITLE 2 PSEUDOMONAS FLUORESCENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHENAZINE BIOSYNTHESIS PROTEIN PHZF; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS FLUORESCENS; SOURCE 3 ORGANISM_TAXID: 294; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ROSETTA PLYSS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PHENAZINE BIOSYNTHESIS, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.BLANKENFELDT,A.P.KUZIN,T.SKARINA,Y.KORNIYENKO,L.TONG,P.BAYER, AUTHOR 2 P.JANNING,L.S.THOMASHOW,D.V.MAVRODI REVDAT 6 25-OCT-23 1XUA 1 REMARK SEQADV REVDAT 5 11-OCT-17 1XUA 1 REMARK REVDAT 4 13-JUL-11 1XUA 1 VERSN REVDAT 3 24-FEB-09 1XUA 1 VERSN REVDAT 2 23-NOV-04 1XUA 1 JRNL REVDAT 1 09-NOV-04 1XUA 0 JRNL AUTH W.BLANKENFELDT,A.P.KUZIN,T.SKARINA,Y.KORNIYENKO,L.TONG, JRNL AUTH 2 P.BAYER,P.JANNING,L.S.THOMASHOW,D.V.MAVRODI JRNL TITL STRUCTURE AND FUNCTION OF THE PHENAZINE BIOSYNTHETIC PROTEIN JRNL TITL 2 PHZF FROM PSEUDOMONAS FLUORESCENS JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 16431 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 15545603 JRNL DOI 10.1073/PNAS.0407371101 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 40843 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2169 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2885 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1810 REMARK 3 BIN FREE R VALUE SET COUNT : 138 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4248 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 432 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 23.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.804 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4589 ; 0.023 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 4196 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6274 ; 1.747 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9713 ; 3.832 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 601 ; 6.572 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 695 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5325 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 966 ; 0.013 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 754 ; 0.241 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4599 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2283 ; 0.109 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 272 ; 0.162 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.178 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 78 ; 0.337 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.242 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2921 ; 1.091 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4713 ; 1.884 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1668 ; 3.191 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1561 ; 5.075 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 278 REMARK 3 RESIDUE RANGE : A 1001 A 1001 REMARK 3 ORIGIN FOR THE GROUP (A): 6.9930 31.2196 25.0080 REMARK 3 T TENSOR REMARK 3 T11: 0.0281 T22: 0.0115 REMARK 3 T33: 0.0355 T12: -0.0002 REMARK 3 T13: 0.0012 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.2565 L22: 0.0700 REMARK 3 L33: 0.1398 L12: 0.0657 REMARK 3 L13: -0.1001 L23: -0.0065 REMARK 3 S TENSOR REMARK 3 S11: 0.0031 S12: 0.0203 S13: 0.0110 REMARK 3 S21: 0.0035 S22: 0.0118 S23: -0.0016 REMARK 3 S31: -0.0147 S32: -0.0100 S33: -0.0149 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 278 REMARK 3 RESIDUE RANGE : B 1002 B 1002 REMARK 3 ORIGIN FOR THE GROUP (A): 16.8679 10.3887 1.7490 REMARK 3 T TENSOR REMARK 3 T11: 0.0483 T22: 0.0068 REMARK 3 T33: 0.0187 T12: -0.0124 REMARK 3 T13: -0.0027 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.0938 L22: 0.0680 REMARK 3 L33: 0.5228 L12: 0.0177 REMARK 3 L13: 0.0119 L23: -0.1670 REMARK 3 S TENSOR REMARK 3 S11: -0.0056 S12: 0.0139 S13: 0.0253 REMARK 3 S21: -0.0118 S22: 0.0386 S23: -0.0166 REMARK 3 S31: 0.0816 S32: -0.0379 S33: -0.0329 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1XUA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1000030778. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43013 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10400 REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.46300 REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RIGID BODY REFINEMENT OF REMARK 200 1U1W REMARK 200 SOFTWARE USED: RIGID BODY REFINEMENT OF1U1W REMARK 200 STARTING MODEL: 1U1W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% (W/V) PEG 4000, 0.1M NA-CITRATE, REMARK 280 0.2M (NH4) ACETATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 46.47500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.21500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.47500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.21500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B1134 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N MET A 1 O HOH A 1194 2.08 REMARK 500 O HOH A 1203 O HOH A 1218 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ASN A 109 OG SER A 140 4556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 91 CB ARG A 91 CG -0.174 REMARK 500 ARG B 192 CG ARG B 192 CD 0.164 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 39 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 39 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP A 57 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 107 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 193 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 224 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP B 25 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP B 57 CB - CG - OD2 ANGL. DEV. = 7.7 DEGREES REMARK 500 ASP B 130 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 273 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 15 -3.97 75.29 REMARK 500 ASN A 54 35.06 -149.36 REMARK 500 ARG A 129 41.94 -140.65 REMARK 500 LEU B 15 -0.14 79.79 REMARK 500 ASN B 54 34.66 -140.83 REMARK 500 ASN B 109 -131.22 60.22 REMARK 500 ALA B 190 139.20 -176.16 REMARK 500 SER B 200 85.83 -158.83 REMARK 500 GLN B 258 87.63 -159.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 110 SER B 111 -149.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HHA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HHA B 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U1V RELATED DB: PDB REMARK 900 WT SULFATE COMPLEX REMARK 900 RELATED ID: 1U1W RELATED DB: PDB REMARK 900 WT 3-HYDROXYANTHRANILIC ACID COMPLEX REMARK 900 RELATED ID: 1U1X RELATED DB: PDB REMARK 900 WT DHHA COMPLEX DBREF 1XUA A 1 278 UNP Q51792 PHZF_PSEFL 1 278 DBREF 1XUA B 1 278 UNP Q51792 PHZF_PSEFL 1 278 SEQADV 1XUA MET A -19 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA GLY A -18 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA SER A -17 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA SER A -16 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA HIS A -15 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA HIS A -14 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA HIS A -13 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA HIS A -12 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA HIS A -11 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA HIS A -10 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA SER A -9 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA SER A -8 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA GLY A -7 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA LEU A -6 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA VAL A -5 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA PRO A -4 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA ARG A -3 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA GLY A -2 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA SER A -1 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA HIS A 0 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA MET B -19 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA GLY B -18 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA SER B -17 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA SER B -16 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA HIS B -15 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA HIS B -14 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA HIS B -13 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA HIS B -12 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA HIS B -11 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA HIS B -10 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA SER B -9 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA SER B -8 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA GLY B -7 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA LEU B -6 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA VAL B -5 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA PRO B -4 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA ARG B -3 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA GLY B -2 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA SER B -1 UNP Q51792 CLONING ARTIFACT SEQADV 1XUA HIS B 0 UNP Q51792 CLONING ARTIFACT SEQRES 1 A 298 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 298 LEU VAL PRO ARG GLY SER HIS MET HIS ASN TYR VAL ILE SEQRES 3 A 298 ILE ASP ALA PHE ALA SER VAL PRO LEU GLU GLY ASN PRO SEQRES 4 A 298 VAL ALA VAL PHE PHE ASP ALA ASP ASP LEU PRO PRO ALA SEQRES 5 A 298 GLN MET GLN ARG ILE ALA ARG GLU MET ASN LEU SER GLU SEQRES 6 A 298 SER THR PHE VAL LEU LYS PRO ARG ASN GLY GLY ASP ALA SEQRES 7 A 298 LEU ILE ARG ILE PHE THR PRO VAL ASN GLU LEU PRO PHE SEQRES 8 A 298 ALA GLY HIS PRO LEU LEU GLY THR ALA ILE ALA LEU GLY SEQRES 9 A 298 ALA HIS THR ASP ASN HIS ARG LEU TYR LEU GLU THR GLN SEQRES 10 A 298 MET GLY THR ILE ALA PHE GLU LEU GLU ARG GLN ASN GLY SEQRES 11 A 298 SER VAL ILE ALA ALA SER MET ASP GLN PRO ILE PRO THR SEQRES 12 A 298 TRP THR ALA LEU GLY ARG ASP ALA GLU LEU LEU LYS ALA SEQRES 13 A 298 LEU GLY ILE SER ASP SER THR PHE PRO ILE GLU ILE TYR SEQRES 14 A 298 HIS ASN GLY PRO ARG HIS VAL PHE VAL GLY LEU PRO SER SEQRES 15 A 298 ILE ASP ALA LEU SER ALA LEU HIS PRO ASP HIS ARG ALA SEQRES 16 A 298 LEU SER ASN PHE HIS ASP MET ALA ILE ASN CYS PHE ALA SEQRES 17 A 298 GLY ALA GLY ARG ARG TRP ARG SER ARG MET PHE SER PRO SEQRES 18 A 298 ALA TYR GLY VAL VAL GLU ASP ALA ALA THR GLY SER ALA SEQRES 19 A 298 ALA GLY PRO LEU ALA ILE HIS LEU ALA ARG HIS GLY GLN SEQRES 20 A 298 ILE GLU PHE GLY GLN PRO VAL GLU ILE LEU GLN GLY VAL SEQRES 21 A 298 GLU ILE GLY ARG PRO SER LEU MET PHE ALA LYS ALA GLU SEQRES 22 A 298 GLY ARG ALA GLU GLN LEU THR ARG VAL GLU VAL SER GLY SEQRES 23 A 298 ASN GLY VAL THR PHE GLY ARG GLY THR ILE VAL LEU SEQRES 1 B 298 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 298 LEU VAL PRO ARG GLY SER HIS MET HIS ASN TYR VAL ILE SEQRES 3 B 298 ILE ASP ALA PHE ALA SER VAL PRO LEU GLU GLY ASN PRO SEQRES 4 B 298 VAL ALA VAL PHE PHE ASP ALA ASP ASP LEU PRO PRO ALA SEQRES 5 B 298 GLN MET GLN ARG ILE ALA ARG GLU MET ASN LEU SER GLU SEQRES 6 B 298 SER THR PHE VAL LEU LYS PRO ARG ASN GLY GLY ASP ALA SEQRES 7 B 298 LEU ILE ARG ILE PHE THR PRO VAL ASN GLU LEU PRO PHE SEQRES 8 B 298 ALA GLY HIS PRO LEU LEU GLY THR ALA ILE ALA LEU GLY SEQRES 9 B 298 ALA HIS THR ASP ASN HIS ARG LEU TYR LEU GLU THR GLN SEQRES 10 B 298 MET GLY THR ILE ALA PHE GLU LEU GLU ARG GLN ASN GLY SEQRES 11 B 298 SER VAL ILE ALA ALA SER MET ASP GLN PRO ILE PRO THR SEQRES 12 B 298 TRP THR ALA LEU GLY ARG ASP ALA GLU LEU LEU LYS ALA SEQRES 13 B 298 LEU GLY ILE SER ASP SER THR PHE PRO ILE GLU ILE TYR SEQRES 14 B 298 HIS ASN GLY PRO ARG HIS VAL PHE VAL GLY LEU PRO SER SEQRES 15 B 298 ILE ASP ALA LEU SER ALA LEU HIS PRO ASP HIS ARG ALA SEQRES 16 B 298 LEU SER ASN PHE HIS ASP MET ALA ILE ASN CYS PHE ALA SEQRES 17 B 298 GLY ALA GLY ARG ARG TRP ARG SER ARG MET PHE SER PRO SEQRES 18 B 298 ALA TYR GLY VAL VAL GLU ASP ALA ALA THR GLY SER ALA SEQRES 19 B 298 ALA GLY PRO LEU ALA ILE HIS LEU ALA ARG HIS GLY GLN SEQRES 20 B 298 ILE GLU PHE GLY GLN PRO VAL GLU ILE LEU GLN GLY VAL SEQRES 21 B 298 GLU ILE GLY ARG PRO SER LEU MET PHE ALA LYS ALA GLU SEQRES 22 B 298 GLY ARG ALA GLU GLN LEU THR ARG VAL GLU VAL SER GLY SEQRES 23 B 298 ASN GLY VAL THR PHE GLY ARG GLY THR ILE VAL LEU HET HHA A1001 11 HET HHA B1002 11 HETNAM HHA (2S,3S)-TRANS-2,3-DIHYDRO-3-HYDROXYANTHRANILIC ACID FORMUL 3 HHA 2(C7 H9 N O3) FORMUL 5 HOH *432(H2 O) HELIX 1 1 PRO A 30 ASN A 42 1 13 HELIX 2 2 ALA A 72 ALA A 85 1 14 HELIX 3 3 ARG A 129 GLY A 138 1 10 HELIX 4 4 SER A 162 LEU A 169 1 8 HELIX 5 5 ASP A 172 SER A 177 1 6 HELIX 6 6 PRO A 201 GLY A 204 5 4 HELIX 7 7 THR A 211 HIS A 225 1 15 HELIX 8 8 ASP B 25 LEU B 29 5 5 HELIX 9 9 PRO B 30 ASN B 42 1 13 HELIX 10 10 ALA B 72 ALA B 85 1 14 HELIX 11 11 ARG B 129 GLY B 138 1 10 HELIX 12 12 SER B 162 LEU B 169 1 8 HELIX 13 13 ASP B 172 SER B 177 1 6 HELIX 14 14 PRO B 201 GLY B 204 5 4 HELIX 15 15 THR B 211 HIS B 225 1 15 SHEET 1 A40 THR A 123 ALA A 126 0 SHEET 2 A40 GLU A 147 HIS A 150 -1 N ILE A 148 O THR A 125 SHEET 3 A40 ARG A 154 GLY A 159 -1 O HIS A 155 N TYR A 149 SHEET 4 A40 ALA A 183 ALA A 190 1 O ALA A 183 N VAL A 156 SHEET 5 A40 ARG A 193 SER A 200 -1 O ARG A 193 N ALA A 190 SHEET 6 A40 VAL A 205 ASP A 208 -1 N VAL A 205 O SER A 200 SHEET 7 A40 ARG A 193 SER A 200 -1 O MET A 198 N ASP A 208 SHEET 8 A40 VAL A 234 GLN A 238 1 O GLU A 235 N TRP A 194 SHEET 9 A40 SER A 246 ARG A 255 -1 N SER A 246 O GLN A 238 SHEET 10 A40 GLN A 258 ILE A 276 -1 O GLN A 258 N ARG A 255 SHEET 11 A40 HIS A 2 ALA A 9 -1 O HIS A 2 N ILE A 276 SHEET 12 A40 ASN A 18 PHE A 23 -1 N ASN A 18 O ALA A 9 SHEET 13 A40 SER A 46 LEU A 50 1 O THR A 47 N PHE A 23 SHEET 14 A40 ALA A 58 PHE A 63 -1 O LEU A 59 N LEU A 50 SHEET 15 A40 GLU A 68 LEU A 69 -1 N LEU A 69 O ILE A 62 SHEET 16 A40 ALA A 58 PHE A 63 -1 O ILE A 62 N LEU A 69 SHEET 17 A40 ARG A 91 THR A 96 1 O TYR A 93 N ALA A 58 SHEET 18 A40 GLY A 99 GLN A 108 -1 N GLY A 99 O THR A 96 SHEET 19 A40 SER A 111 ASP A 118 -1 N SER A 111 O GLN A 108 SHEET 20 A40 GLN A 258 ILE A 276 -1 O VAL A 264 N MET A 117 SHEET 21 A40 GLN B 258 ILE B 276 -1 O ARG B 273 N THR A 275 SHEET 22 A40 HIS B 2 ALA B 9 -1 O HIS B 2 N ILE B 276 SHEET 23 A40 ASN B 18 PHE B 23 -1 O ASN B 18 N ALA B 9 SHEET 24 A40 GLU B 45 LEU B 50 1 O GLU B 45 N ALA B 21 SHEET 25 A40 ALA B 58 PHE B 63 -1 O LEU B 59 N LEU B 50 SHEET 26 A40 GLU B 68 LEU B 69 -1 N LEU B 69 O ILE B 62 SHEET 27 A40 ALA B 58 PHE B 63 -1 O ILE B 62 N LEU B 69 SHEET 28 A40 ARG B 91 THR B 96 1 O TYR B 93 N ALA B 58 SHEET 29 A40 GLY B 99 GLN B 108 -1 N GLY B 99 O THR B 96 SHEET 30 A40 SER B 111 ASP B 118 -1 O SER B 111 N GLN B 108 SHEET 31 A40 GLN B 258 ILE B 276 -1 O VAL B 264 N MET B 117 SHEET 32 A40 SER B 246 ARG B 255 -1 O PHE B 249 N SER B 265 SHEET 33 A40 VAL B 234 GLN B 238 -1 N VAL B 234 O ALA B 250 SHEET 34 A40 ARG B 193 SER B 200 1 O TRP B 194 N LEU B 237 SHEET 35 A40 VAL B 205 ASP B 208 -1 N VAL B 205 O SER B 200 SHEET 36 A40 ARG B 193 SER B 200 -1 O MET B 198 N ASP B 208 SHEET 37 A40 ALA B 183 ALA B 190 -1 N ILE B 184 O PHE B 199 SHEET 38 A40 ARG B 154 GLY B 159 1 O ARG B 154 N ALA B 183 SHEET 39 A40 GLU B 147 HIS B 150 -1 O GLU B 147 N PHE B 157 SHEET 40 A40 THR B 123 ALA B 126 -1 O THR B 123 N HIS B 150 SITE 1 AC1 13 GLU A 45 LEU A 69 ALA A 72 GLY A 73 SITE 2 AC1 13 HIS A 74 PRO A 75 MET A 198 ASP A 208 SITE 3 AC1 13 ALA A 210 THR A 211 GLY A 212 SER A 213 SITE 4 AC1 13 HOH A1019 SITE 1 AC2 13 GLU B 45 LEU B 69 ALA B 72 GLY B 73 SITE 2 AC2 13 HIS B 74 PRO B 75 MET B 198 ASP B 208 SITE 3 AC2 13 ALA B 210 THR B 211 GLY B 212 SER B 213 SITE 4 AC2 13 HOH B1017 CRYST1 92.950 100.430 57.490 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010758 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009957 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017394 0.00000