data_1XUE # _entry.id 1XUE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1XUE pdb_00001xue 10.2210/pdb1xue/pdb WWPDB D_1000177310 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1XUE _pdbx_database_status.recvd_initial_deposition_date 1996-08-26 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhu, L.' 1 'Chou, S.-H.' 2 'Reid, B.R.' 3 # _citation.id primary _citation.title 'A single G-to-C change causes human centromere TGGAA repeats to fold back into hairpins.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 93 _citation.page_first 12159 _citation.page_last 12164 _citation.year 1996 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 8901550 _citation.pdbx_database_id_DOI 10.1073/pnas.93.22.12159 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhu, L.' 1 ? primary 'Chou, S.H.' 2 ? primary 'Reid, B.R.' 3 ? # _cell.entry_id 1XUE _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XUE _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*GP*TP*GP*GP*AP*AP*TP*GP*CP*AP*AP*TP*GP*GP*AP*AP*C)-3') ; _entity.formula_weight 5300.460 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DT)(DG)(DG)(DA)(DA)(DT)(DG)(DC)(DA)(DA)(DT)(DG)(DG)(DA)(DA)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GTGGAATGCAATGGAAC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DT n 1 3 DG n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DG n 1 9 DC n 1 10 DA n 1 11 DA n 1 12 DT n 1 13 DG n 1 14 DG n 1 15 DA n 1 16 DA n 1 17 DC n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1XUE _struct_ref.pdbx_db_accession 1XUE _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1XUE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 17 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1XUE _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 17 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 17 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # _pdbx_nmr_ensemble.entry_id 1XUE _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria ? # _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name Discover _pdbx_nmr_software.version ? _pdbx_nmr_software.authors BIOSYM _pdbx_nmr_software.ordinal 1 # _exptl.entry_id 1XUE _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1XUE _struct.title 'STRUCTURE OF GTGGAATGCAATGGAAC HAIRPIN, NMR, 10 STRUCTURES' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1XUE _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DEOXYRIBONUCLEIC ACID, MUTATION, FOLDING, CENTROMERE, SATELLITE III, DNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DA 16 N1 ? ? A DG 1 A DA 16 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog2 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DA 16 N6 ? ? A DG 1 A DA 16 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog3 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 17 N3 ? ? A DG 1 A DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 17 O2 ? ? A DG 1 A DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 17 N4 ? ? A DG 1 A DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 2 O2 ? ? ? 1_555 A DA 15 N6 ? ? A DT 2 A DA 15 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog7 hydrog ? ? A DT 2 N3 ? ? ? 1_555 A DA 16 N1 ? ? A DT 2 A DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 2 O4 ? ? ? 1_555 A DA 16 N6 ? ? A DT 2 A DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DA 15 N7 ? ? A DG 3 A DA 15 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog10 hydrog ? ? A DG 3 N3 ? ? ? 1_555 A DA 15 N6 ? ? A DG 3 A DA 15 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog11 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DG 13 N3 ? ? A DA 5 A DG 13 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog12 hydrog ? ? A DA 5 N7 ? ? ? 1_555 A DG 13 N2 ? ? A DA 5 A DG 13 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 A DT 12 N3 ? ? A DA 6 A DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 A DT 12 O4 ? ? A DA 6 A DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 7 O2 ? ? ? 1_555 A DA 10 N6 ? ? A DT 7 A DA 10 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog16 hydrog ? ? A DT 7 N3 ? ? ? 1_555 A DA 11 N1 ? ? A DT 7 A DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 O4 ? ? ? 1_555 A DA 11 N6 ? ? A DT 7 A DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DA 10 N7 ? ? A DG 8 A DA 10 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog19 hydrog ? ? A DG 8 N3 ? ? ? 1_555 A DA 10 N6 ? ? A DG 8 A DA 10 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1XUE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1XUE _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DT 2 2 2 DT T A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DG 8 8 8 DG G A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DA 10 10 10 DA A A . n A 1 11 DA 11 11 11 DA A A . n A 1 12 DT 12 12 12 DT T A . n A 1 13 DG 13 13 13 DG G A . n A 1 14 DG 14 14 14 DG G A . n A 1 15 DA 15 15 15 DA A A . n A 1 16 DA 16 16 16 DA A A . n A 1 17 DC 17 17 17 DC C A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-03-12 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_nmr_software 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_pdbx_nmr_software.name' # _software.name AMBER _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.19 108.30 1.89 0.30 N 2 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 111.33 108.30 3.03 0.30 N 3 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.24 108.30 2.94 0.30 N 4 1 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.82 122.90 -4.08 0.60 N 5 1 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.65 108.30 3.35 0.30 N 6 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.71 108.30 2.41 0.30 N 7 1 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 110.50 108.30 2.20 0.30 N 8 1 "O4'" A DA 15 ? ? "C1'" A DA 15 ? ? N9 A DA 15 ? ? 111.14 108.30 2.84 0.30 N 9 1 "O4'" A DC 17 ? ? "C1'" A DC 17 ? ? N1 A DC 17 ? ? 110.55 108.30 2.25 0.30 N 10 2 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.53 108.30 3.23 0.30 N 11 2 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.26 108.30 1.96 0.30 N 12 2 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 111.33 108.30 3.03 0.30 N 13 2 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.27 108.30 2.97 0.30 N 14 2 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.84 122.90 -4.06 0.60 N 15 2 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.71 108.30 3.41 0.30 N 16 2 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.73 108.30 2.43 0.30 N 17 2 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 110.50 108.30 2.20 0.30 N 18 2 "O4'" A DA 15 ? ? "C1'" A DA 15 ? ? N9 A DA 15 ? ? 111.12 108.30 2.82 0.30 N 19 2 "O4'" A DC 17 ? ? "C1'" A DC 17 ? ? N1 A DC 17 ? ? 110.53 108.30 2.23 0.30 N 20 3 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.32 108.30 3.02 0.30 N 21 3 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.62 108.30 2.32 0.30 N 22 3 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 111.34 108.30 3.04 0.30 N 23 3 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.29 108.30 2.99 0.30 N 24 3 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.84 122.90 -4.06 0.60 N 25 3 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.56 108.30 3.26 0.30 N 26 3 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.75 108.30 2.45 0.30 N 27 3 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 110.44 108.30 2.14 0.30 N 28 3 "O4'" A DA 15 ? ? "C1'" A DA 15 ? ? N9 A DA 15 ? ? 111.16 108.30 2.86 0.30 N 29 3 "O4'" A DC 17 ? ? "C1'" A DC 17 ? ? N1 A DC 17 ? ? 110.42 108.30 2.12 0.30 N 30 4 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.15 108.30 1.85 0.30 N 31 4 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.55 108.30 2.25 0.30 N 32 4 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 111.37 108.30 3.07 0.30 N 33 4 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.28 108.30 2.98 0.30 N 34 4 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.90 122.90 -4.00 0.60 N 35 4 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.66 108.30 3.36 0.30 N 36 4 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.71 108.30 2.41 0.30 N 37 4 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 110.52 108.30 2.22 0.30 N 38 4 "O4'" A DA 15 ? ? "C1'" A DA 15 ? ? N9 A DA 15 ? ? 111.20 108.30 2.90 0.30 N 39 4 "O4'" A DA 16 ? ? "C1'" A DA 16 ? ? N9 A DA 16 ? ? 110.10 108.30 1.80 0.30 N 40 4 "O4'" A DC 17 ? ? "C1'" A DC 17 ? ? N1 A DC 17 ? ? 110.47 108.30 2.17 0.30 N 41 5 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.16 108.30 1.86 0.30 N 42 5 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 111.33 108.30 3.03 0.30 N 43 5 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.24 108.30 2.94 0.30 N 44 5 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.83 122.90 -4.07 0.60 N 45 5 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.71 108.30 3.41 0.30 N 46 5 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.73 108.30 2.43 0.30 N 47 5 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 110.39 108.30 2.09 0.30 N 48 5 "O4'" A DA 15 ? ? "C1'" A DA 15 ? ? N9 A DA 15 ? ? 111.09 108.30 2.79 0.30 N 49 5 "O4'" A DC 17 ? ? "C1'" A DC 17 ? ? N1 A DC 17 ? ? 110.41 108.30 2.11 0.30 N 50 6 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.81 108.30 2.51 0.30 N 51 6 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.58 108.30 2.28 0.30 N 52 6 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 111.33 108.30 3.03 0.30 N 53 6 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.25 108.30 2.95 0.30 N 54 6 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.90 122.90 -4.00 0.60 N 55 6 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.61 108.30 3.31 0.30 N 56 6 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.78 108.30 2.48 0.30 N 57 6 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 110.51 108.30 2.21 0.30 N 58 6 "O4'" A DA 15 ? ? "C1'" A DA 15 ? ? N9 A DA 15 ? ? 111.13 108.30 2.83 0.30 N 59 6 "O4'" A DC 17 ? ? "C1'" A DC 17 ? ? N1 A DC 17 ? ? 110.50 108.30 2.20 0.30 N 60 7 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.66 108.30 2.36 0.30 N 61 7 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.66 108.30 2.36 0.30 N 62 7 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 111.34 108.30 3.04 0.30 N 63 7 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.29 108.30 2.99 0.30 N 64 7 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.86 122.90 -4.04 0.60 N 65 7 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.59 108.30 3.29 0.30 N 66 7 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.70 108.30 2.40 0.30 N 67 7 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 110.54 108.30 2.24 0.30 N 68 7 "O4'" A DA 15 ? ? "C1'" A DA 15 ? ? N9 A DA 15 ? ? 111.08 108.30 2.78 0.30 N 69 7 "O4'" A DC 17 ? ? "C1'" A DC 17 ? ? N1 A DC 17 ? ? 110.48 108.30 2.18 0.30 N 70 8 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.85 108.30 2.55 0.30 N 71 8 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.22 108.30 1.92 0.30 N 72 8 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 111.44 108.30 3.14 0.30 N 73 8 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.28 108.30 2.98 0.30 N 74 8 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.89 122.90 -4.01 0.60 N 75 8 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.60 108.30 3.30 0.30 N 76 8 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.75 108.30 2.45 0.30 N 77 8 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 110.56 108.30 2.26 0.30 N 78 8 "O4'" A DA 15 ? ? "C1'" A DA 15 ? ? N9 A DA 15 ? ? 111.13 108.30 2.83 0.30 N 79 8 "O4'" A DC 17 ? ? "C1'" A DC 17 ? ? N1 A DC 17 ? ? 110.47 108.30 2.17 0.30 N 80 9 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.15 108.30 1.85 0.30 N 81 9 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 111.38 108.30 3.08 0.30 N 82 9 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.20 108.30 2.90 0.30 N 83 9 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.87 122.90 -4.03 0.60 N 84 9 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.61 108.30 3.31 0.30 N 85 9 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.74 108.30 2.44 0.30 N 86 9 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 110.50 108.30 2.20 0.30 N 87 9 "O4'" A DA 15 ? ? "C1'" A DA 15 ? ? N9 A DA 15 ? ? 111.15 108.30 2.85 0.30 N 88 9 "O4'" A DC 17 ? ? "C1'" A DC 17 ? ? N1 A DC 17 ? ? 110.55 108.30 2.25 0.30 N 89 10 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.38 108.30 3.08 0.30 N 90 10 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.54 108.30 2.24 0.30 N 91 10 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 111.39 108.30 3.09 0.30 N 92 10 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.29 108.30 2.99 0.30 N 93 10 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.88 122.90 -4.02 0.60 N 94 10 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.65 108.30 3.35 0.30 N 95 10 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.75 108.30 2.45 0.30 N 96 10 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 110.57 108.30 2.27 0.30 N 97 10 "O4'" A DA 15 ? ? "C1'" A DA 15 ? ? N9 A DA 15 ? ? 111.14 108.30 2.84 0.30 N 98 10 "O4'" A DA 16 ? ? "C1'" A DA 16 ? ? N9 A DA 16 ? ? 110.12 108.30 1.82 0.30 N 99 10 "O4'" A DC 17 ? ? "C1'" A DC 17 ? ? N1 A DC 17 ? ? 110.68 108.30 2.38 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DT A 2 ? ? 0.062 'SIDE CHAIN' 2 1 DA A 10 ? ? 0.070 'SIDE CHAIN' 3 2 DA A 10 ? ? 0.070 'SIDE CHAIN' 4 3 DA A 10 ? ? 0.070 'SIDE CHAIN' 5 4 DA A 10 ? ? 0.070 'SIDE CHAIN' 6 5 DT A 2 ? ? 0.059 'SIDE CHAIN' 7 5 DA A 10 ? ? 0.070 'SIDE CHAIN' 8 6 DA A 10 ? ? 0.070 'SIDE CHAIN' 9 7 DA A 10 ? ? 0.070 'SIDE CHAIN' 10 8 DA A 10 ? ? 0.070 'SIDE CHAIN' 11 9 DT A 2 ? ? 0.062 'SIDE CHAIN' 12 9 DA A 10 ? ? 0.070 'SIDE CHAIN' 13 10 DA A 10 ? ? 0.070 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1XUE 'double helix' 1XUE 'mismatched base pair' 1XUE 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 17 1_555 0.692 -0.541 1.417 -3.007 5.839 1.518 1 A_DG1:DC17_A A 1 ? A 17 ? 19 1 1 A DT 2 1_555 A DA 16 1_555 0.554 -0.300 0.739 6.240 6.039 1.329 2 A_DT2:DA16_A A 2 ? A 16 ? 20 1 1 A DG 3 1_555 A DA 15 1_555 6.454 -4.447 0.963 27.203 -14.789 4.777 3 A_DG3:DA15_A A 3 ? A 15 ? 11 9 1 A DA 5 1_555 A DG 13 1_555 -6.369 -4.426 1.131 -32.398 -18.898 7.456 4 A_DA5:DG13_A A 5 ? A 13 ? 11 9 1 A DA 6 1_555 A DT 12 1_555 -0.421 -0.141 0.370 -11.659 8.785 -0.676 5 A_DA6:DT12_A A 6 ? A 12 ? 20 1 1 A DT 7 1_555 A DA 11 1_555 0.403 -0.154 0.504 10.798 11.535 1.600 6 A_DT7:DA11_A A 7 ? A 11 ? 20 1 1 A DG 8 1_555 A DA 10 1_555 6.320 -4.408 1.156 28.243 -7.155 9.812 7 A_DG8:DA10_A A 8 ? A 10 ? 11 9 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 17 1_555 A DT 2 1_555 A DA 16 1_555 0.095 -1.091 3.166 7.101 -0.448 33.239 -1.798 0.944 3.133 -0.772 -12.239 33.971 1 AA_DG1DT2:DA16DC17_AA A 1 ? A 17 ? A 2 ? A 16 ? 1 A DT 2 1_555 A DA 16 1_555 A DG 3 1_555 A DA 15 1_555 -0.105 1.052 2.887 3.578 1.366 59.181 1.002 0.267 2.898 1.381 -3.618 59.293 2 AA_DT2DG3:DA15DA16_AA A 2 ? A 16 ? A 3 ? A 15 ? 1 A DA 5 1_555 A DG 13 1_555 A DA 6 1_555 A DT 12 1_555 -0.319 1.199 2.957 -2.641 5.170 60.908 0.952 0.198 3.050 5.087 2.599 61.158 3 AA_DA5DA6:DT12DG13_AA A 5 ? A 13 ? A 6 ? A 12 ? 1 A DA 6 1_555 A DT 12 1_555 A DT 7 1_555 A DA 11 1_555 0.304 -0.517 2.829 -1.772 2.936 30.240 -1.488 -0.883 2.746 5.606 3.383 30.430 4 AA_DA6DT7:DA11DT12_AA A 6 ? A 12 ? A 7 ? A 11 ? 1 A DT 7 1_555 A DA 11 1_555 A DG 8 1_555 A DA 10 1_555 0.621 0.858 2.825 2.398 5.469 54.212 0.645 -0.551 2.916 5.981 -2.623 54.515 5 AA_DT7DG8:DA10DA11_AA A 7 ? A 11 ? A 8 ? A 10 ? #