HEADER TRANSFERASE 26-OCT-04 1XUP TITLE ENTEROCOCCUS CASSELIFLAVUS GLYCEROL KINASE COMPLEXED WITH GLYCEROL COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCEROL KINASE; COMPND 3 CHAIN: O, X; COMPND 4 SYNONYM: ATP:GLYCEROL 3-PHOSPHOTRANSFERASE, GLYCEROKINASE, GK; COMPND 5 EC: 2.7.1.30; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS CASSELIFLAVUS; SOURCE 3 ORGANISM_TAXID: 37734; SOURCE 4 GENE: GLPK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: POXO4 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.I.YEH,V.CHARRIER,J.PAULO,L.HOU,E.DARBON,W.G.J.HOL,J.DEUTSCHER REVDAT 4 14-FEB-24 1XUP 1 REMARK REVDAT 3 13-JUL-11 1XUP 1 VERSN REVDAT 2 24-FEB-09 1XUP 1 VERSN REVDAT 1 14-DEC-04 1XUP 0 JRNL AUTH J.I.YEH,V.CHARRIER,J.PAULO,L.HOU,E.DARBON,A.CLAIRBORN, JRNL AUTH 2 W.G.J.HOL,J.DEUTSCHER JRNL TITL STRUCTURES OF ENTEROCOCCAL GLYCEROL KINASE IN THE ABSENCE JRNL TITL 2 AND PRESENCE OF GLYCEROL: CORRELATION OF CONFORMATION TO JRNL TITL 3 SUBSTRATE BINDING AND A MECHANISM OF ACTIVATION BY JRNL TITL 4 PHOSPHORYLATION JRNL REF BIOCHEMISTRY V. 43 362 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 14717590 JRNL DOI 10.1021/BI034258O REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.0 REMARK 3 NUMBER OF REFLECTIONS : 18705 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1871 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7545 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : 0.10 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1XUP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1000030783. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 9 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18705 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : 0.05100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.25000 REMARK 200 R SYM FOR SHELL (I) : 0.13000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, PEG 4000, GLYCEROL, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.00500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.72500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.83500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 100.72500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.00500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.83500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: O, X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS X 227 CG ND1 CD2 CE1 NE2 REMARK 470 VAL X 238 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO O 239 CG1 ILE O 240 1.51 REMARK 500 O SER X 32 NE2 GLN X 33 1.61 REMARK 500 OD1 ASN X 82 CG MET X 243 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO O 37 CA - N - CD ANGL. DEV. = -11.8 DEGREES REMARK 500 PRO O 41 C - N - CD ANGL. DEV. = -15.2 DEGREES REMARK 500 PRO O 41 CA - N - CD ANGL. DEV. = -17.1 DEGREES REMARK 500 PRO O 72 CA - N - CD ANGL. DEV. = -18.1 DEGREES REMARK 500 PRO O 97 CA - N - CD ANGL. DEV. = -20.1 DEGREES REMARK 500 PRO O 111 CA - N - CD ANGL. DEV. = -22.2 DEGREES REMARK 500 ASP O 176 C - N - CA ANGL. DEV. = -23.4 DEGREES REMARK 500 PRO O 211 C - N - CD ANGL. DEV. = -16.9 DEGREES REMARK 500 PRO O 211 CA - N - CD ANGL. DEV. = -12.9 DEGREES REMARK 500 PRO O 216 C - N - CD ANGL. DEV. = -14.6 DEGREES REMARK 500 PRO O 216 CA - N - CD ANGL. DEV. = -18.5 DEGREES REMARK 500 PRO O 280 CA - N - CD ANGL. DEV. = -20.5 DEGREES REMARK 500 PRO O 328 CA - N - CD ANGL. DEV. = -12.6 DEGREES REMARK 500 PRO O 347 CA - N - CD ANGL. DEV. = -23.5 DEGREES REMARK 500 PRO O 355 CA - N - CD ANGL. DEV. = -26.3 DEGREES REMARK 500 PRO O 405 C - N - CD ANGL. DEV. = -18.9 DEGREES REMARK 500 PRO O 405 CA - N - CD ANGL. DEV. = -24.4 DEGREES REMARK 500 PRO O 473 C - N - CD ANGL. DEV. = -13.0 DEGREES REMARK 500 PRO O 473 CA - N - CD ANGL. DEV. = -17.4 DEGREES REMARK 500 PRO O 476 C - N - CD ANGL. DEV. = -12.9 DEGREES REMARK 500 PRO O 476 CA - N - CD ANGL. DEV. = -15.1 DEGREES REMARK 500 GLN X 33 CA - C - N ANGL. DEV. = -15.3 DEGREES REMARK 500 PRO X 37 CA - N - CD ANGL. DEV. = -15.5 DEGREES REMARK 500 PRO X 41 CA - N - CD ANGL. DEV. = -16.4 DEGREES REMARK 500 PRO X 72 CA - N - CD ANGL. DEV. = -18.1 DEGREES REMARK 500 PRO X 111 CA - N - CD ANGL. DEV. = -15.0 DEGREES REMARK 500 PRO X 211 CA - N - CD ANGL. DEV. = -19.7 DEGREES REMARK 500 PRO X 216 CA - N - CD ANGL. DEV. = -14.3 DEGREES REMARK 500 PRO X 239 CA - N - CD ANGL. DEV. = -17.0 DEGREES REMARK 500 PRO X 280 CA - N - CD ANGL. DEV. = -11.7 DEGREES REMARK 500 PRO X 328 CA - N - CD ANGL. DEV. = -14.9 DEGREES REMARK 500 PRO X 347 C - N - CD ANGL. DEV. = -13.4 DEGREES REMARK 500 PRO X 347 CA - N - CD ANGL. DEV. = -16.0 DEGREES REMARK 500 PRO X 355 CA - N - CD ANGL. DEV. = -11.5 DEGREES REMARK 500 PRO X 405 C - N - CD ANGL. DEV. = -13.6 DEGREES REMARK 500 PRO X 405 CA - N - CD ANGL. DEV. = -20.7 DEGREES REMARK 500 PRO X 473 C - N - CD ANGL. DEV. = -13.6 DEGREES REMARK 500 PRO X 473 CA - N - CD ANGL. DEV. = -10.9 DEGREES REMARK 500 PRO X 476 CA - N - CD ANGL. DEV. = -16.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN O 12 -18.44 -146.75 REMARK 500 THR O 15 -29.86 -166.92 REMARK 500 SER O 16 89.19 -56.01 REMARK 500 ALA O 19 158.10 76.22 REMARK 500 ASP O 23 77.83 -67.06 REMARK 500 ARG O 24 -72.90 42.32 REMARK 500 ASN O 25 38.68 -71.02 REMARK 500 ILE O 29 41.54 -163.28 REMARK 500 PRO O 37 97.82 -53.09 REMARK 500 PRO O 41 -160.81 -66.17 REMARK 500 SER O 43 -75.95 63.11 REMARK 500 GLU O 47 114.18 -170.03 REMARK 500 ILE O 61 -75.55 -53.88 REMARK 500 ILE O 66 -72.81 -93.13 REMARK 500 ARG O 71 175.94 -59.83 REMARK 500 ALA O 74 6.14 -166.76 REMARK 500 ILE O 75 -80.23 -63.98 REMARK 500 ALA O 76 -159.01 47.40 REMARK 500 THR O 81 62.56 -107.75 REMARK 500 GLN O 83 -166.98 -75.43 REMARK 500 GLU O 85 -16.48 93.68 REMARK 500 ILE O 98 62.17 -110.99 REMARK 500 ALA O 99 -179.66 -170.74 REMARK 500 ASN O 100 -164.65 -104.03 REMARK 500 LYS O 117 -98.85 -64.50 REMARK 500 VAL O 118 -84.28 50.76 REMARK 500 ILE O 133 71.71 -66.08 REMARK 500 ALA O 135 -72.74 30.92 REMARK 500 TYR O 136 14.11 -69.38 REMARK 500 SER O 138 -85.73 30.83 REMARK 500 LEU O 146 39.37 -77.76 REMARK 500 ASP O 147 -68.16 -136.51 REMARK 500 GLU O 150 103.54 66.10 REMARK 500 ALA O 152 46.88 -168.46 REMARK 500 ASN O 158 47.80 -84.87 REMARK 500 GLU O 160 -92.97 56.20 REMARK 500 LYS O 173 36.12 -99.32 REMARK 500 GLN O 178 169.51 178.49 REMARK 500 HIS O 180 78.75 -66.11 REMARK 500 MET O 191 -18.71 65.27 REMARK 500 TYR O 193 -134.72 -88.68 REMARK 500 ASN O 194 151.95 176.13 REMARK 500 HIS O 196 40.03 -88.08 REMARK 500 LYS O 197 -52.40 -163.20 REMARK 500 LEU O 198 13.91 59.23 REMARK 500 GLN O 202 -106.22 -74.12 REMARK 500 GLU O 203 -87.55 26.37 REMARK 500 ASP O 206 -1.40 -57.92 REMARK 500 ASN O 209 -39.80 69.56 REMARK 500 PRO O 211 63.96 -64.22 REMARK 500 REMARK 500 THIS ENTRY HAS 202 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL O 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL X 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1R59 RELATED DB: PDB REMARK 900 APO FORM OF GLYCEROL KINASE DBREF 1XUP O 6 492 UNP O34153 GLPK_ENTCA 5 491 DBREF 1XUP X 6 492 UNP O34153 GLPK_ENTCA 5 491 SEQRES 1 O 487 TYR VAL MET ALA ILE ASP GLN GLY THR THR SER SER ARG SEQRES 2 O 487 ALA ILE ILE PHE ASP ARG ASN GLY LYS LYS ILE GLY SER SEQRES 3 O 487 SER GLN LYS GLU PHE PRO GLN TYR PHE PRO LYS SER GLY SEQRES 4 O 487 TRP VAL GLU HIS ASN ALA ASN GLU ILE TRP ASN SER VAL SEQRES 5 O 487 GLN SER VAL ILE ALA GLY ALA PHE ILE GLU SER GLY ILE SEQRES 6 O 487 ARG PRO GLU ALA ILE ALA GLY ILE GLY ILE THR ASN GLN SEQRES 7 O 487 ARG GLU THR THR VAL VAL TRP ASP LYS THR THR GLY GLN SEQRES 8 O 487 PRO ILE ALA ASN ALA ILE VAL TRP GLN SER ARG GLN SER SEQRES 9 O 487 SER PRO ILE ALA ASP GLN LEU LYS VAL ASP GLY HIS THR SEQRES 10 O 487 GLU MET ILE HIS GLU LYS THR GLY LEU VAL ILE ASP ALA SEQRES 11 O 487 TYR PHE SER ALA THR LYS VAL ARG TRP LEU LEU ASP ASN SEQRES 12 O 487 ILE GLU GLY ALA GLN GLU LYS ALA ASP ASN GLY GLU LEU SEQRES 13 O 487 LEU PHE GLY THR ILE ASP SER TRP LEU VAL TRP LYS LEU SEQRES 14 O 487 THR ASP GLY GLN VAL HIS VAL THR ASP TYR SER ASN ALA SEQRES 15 O 487 SER ARG THR MET LEU TYR ASN ILE HIS LYS LEU GLU TRP SEQRES 16 O 487 ASP GLN GLU ILE LEU ASP LEU LEU ASN ILE PRO SER SER SEQRES 17 O 487 MET LEU PRO GLU VAL LYS SER ASN SER GLU VAL TYR GLY SEQRES 18 O 487 HIS THR ARG SER TYR HIS PHE TYR GLY SER GLU VAL PRO SEQRES 19 O 487 ILE ALA GLY MET ALA GLY ASP GLN GLN ALA ALA LEU PHE SEQRES 20 O 487 GLY GLN MET ALA PHE GLU LYS GLY MET ILE LYS ASN THR SEQRES 21 O 487 TYR GLY THR GLY ALA PHE ILE VAL MET ASN THR GLY GLU SEQRES 22 O 487 GLU PRO GLN LEU SER ASP ASN ASP LEU LEU THR THR ILE SEQRES 23 O 487 GLY TYR GLY ILE ASN GLY LYS VAL TYR TYR ALA LEU GLU SEQRES 24 O 487 GLY SER ILE PHE VAL ALA GLY SER ALA ILE GLN TRP LEU SEQRES 25 O 487 ARG ASP GLY LEU ARG MET ILE GLU THR SER PRO GLN SER SEQRES 26 O 487 GLU GLU LEU ALA ALA LYS ALA LYS GLY ASP ASN GLU VAL SEQRES 27 O 487 TYR VAL VAL PRO ALA PHE THR GLY LEU GLY ALA PRO TYR SEQRES 28 O 487 TRP ASP SER GLU ALA ARG GLY ALA VAL PHE GLY LEU THR SEQRES 29 O 487 ARG GLY THR THR LYS GLU ASP PHE VAL ARG ALA THR LEU SEQRES 30 O 487 GLN ALA VAL ALA TYR GLN SER LYS ASP VAL ILE ASP THR SEQRES 31 O 487 MET LYS LYS ASP SER GLY ILE ASP ILE PRO LEU LEU LYS SEQRES 32 O 487 VAL ASP GLY GLY ALA ALA LYS ASN ASP LEU LEU MET GLN SEQRES 33 O 487 PHE GLN ALA ASP ILE LEU ASP ILE ASP VAL GLN ARG ALA SEQRES 34 O 487 ALA ASN LEU GLU THR THR ALA LEU GLY ALA ALA TYR LEU SEQRES 35 O 487 ALA GLY LEU ALA VAL GLY PHE TRP LYS ASP LEU ASP GLU SEQRES 36 O 487 LEU LYS SER MET ALA GLU GLU GLY GLN MET PHE THR PRO SEQRES 37 O 487 GLU MET PRO ALA GLU GLU ARG ASP ASN LEU TYR GLU GLY SEQRES 38 O 487 TRP LYS GLN ALA VAL ALA SEQRES 1 X 487 TYR VAL MET ALA ILE ASP GLN GLY THR THR SER SER ARG SEQRES 2 X 487 ALA ILE ILE PHE ASP ARG ASN GLY LYS LYS ILE GLY SER SEQRES 3 X 487 SER GLN LYS GLU PHE PRO GLN TYR PHE PRO LYS SER GLY SEQRES 4 X 487 TRP VAL GLU HIS ASN ALA ASN GLU ILE TRP ASN SER VAL SEQRES 5 X 487 GLN SER VAL ILE ALA GLY ALA PHE ILE GLU SER GLY ILE SEQRES 6 X 487 ARG PRO GLU ALA ILE ALA GLY ILE GLY ILE THR ASN GLN SEQRES 7 X 487 ARG GLU THR THR VAL VAL TRP ASP LYS THR THR GLY GLN SEQRES 8 X 487 PRO ILE ALA ASN ALA ILE VAL TRP GLN SER ARG GLN SER SEQRES 9 X 487 SER PRO ILE ALA ASP GLN LEU LYS VAL ASP GLY HIS THR SEQRES 10 X 487 GLU MET ILE HIS GLU LYS THR GLY LEU VAL ILE ASP ALA SEQRES 11 X 487 TYR PHE SER ALA THR LYS VAL ARG TRP LEU LEU ASP ASN SEQRES 12 X 487 ILE GLU GLY ALA GLN GLU LYS ALA ASP ASN GLY GLU LEU SEQRES 13 X 487 LEU PHE GLY THR ILE ASP SER TRP LEU VAL TRP LYS LEU SEQRES 14 X 487 THR ASP GLY GLN VAL HIS VAL THR ASP TYR SER ASN ALA SEQRES 15 X 487 SER ARG THR MET LEU TYR ASN ILE HIS LYS LEU GLU TRP SEQRES 16 X 487 ASP GLN GLU ILE LEU ASP LEU LEU ASN ILE PRO SER SER SEQRES 17 X 487 MET LEU PRO GLU VAL LYS SER ASN SER GLU VAL TYR GLY SEQRES 18 X 487 HIS THR ARG SER TYR HIS PHE TYR GLY SER GLU VAL PRO SEQRES 19 X 487 ILE ALA GLY MET ALA GLY ASP GLN GLN ALA ALA LEU PHE SEQRES 20 X 487 GLY GLN MET ALA PHE GLU LYS GLY MET ILE LYS ASN THR SEQRES 21 X 487 TYR GLY THR GLY ALA PHE ILE VAL MET ASN THR GLY GLU SEQRES 22 X 487 GLU PRO GLN LEU SER ASP ASN ASP LEU LEU THR THR ILE SEQRES 23 X 487 GLY TYR GLY ILE ASN GLY LYS VAL TYR TYR ALA LEU GLU SEQRES 24 X 487 GLY SER ILE PHE VAL ALA GLY SER ALA ILE GLN TRP LEU SEQRES 25 X 487 ARG ASP GLY LEU ARG MET ILE GLU THR SER PRO GLN SER SEQRES 26 X 487 GLU GLU LEU ALA ALA LYS ALA LYS GLY ASP ASN GLU VAL SEQRES 27 X 487 TYR VAL VAL PRO ALA PHE THR GLY LEU GLY ALA PRO TYR SEQRES 28 X 487 TRP ASP SER GLU ALA ARG GLY ALA VAL PHE GLY LEU THR SEQRES 29 X 487 ARG GLY THR THR LYS GLU ASP PHE VAL ARG ALA THR LEU SEQRES 30 X 487 GLN ALA VAL ALA TYR GLN SER LYS ASP VAL ILE ASP THR SEQRES 31 X 487 MET LYS LYS ASP SER GLY ILE ASP ILE PRO LEU LEU LYS SEQRES 32 X 487 VAL ASP GLY GLY ALA ALA LYS ASN ASP LEU LEU MET GLN SEQRES 33 X 487 PHE GLN ALA ASP ILE LEU ASP ILE ASP VAL GLN ARG ALA SEQRES 34 X 487 ALA ASN LEU GLU THR THR ALA LEU GLY ALA ALA TYR LEU SEQRES 35 X 487 ALA GLY LEU ALA VAL GLY PHE TRP LYS ASP LEU ASP GLU SEQRES 36 X 487 LEU LYS SER MET ALA GLU GLU GLY GLN MET PHE THR PRO SEQRES 37 X 487 GLU MET PRO ALA GLU GLU ARG ASP ASN LEU TYR GLU GLY SEQRES 38 X 487 TRP LYS GLN ALA VAL ALA HET GOL O 500 6 HET GOL X 501 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) HELIX 1 1 ASN O 49 ALA O 62 1 14 HELIX 2 2 GLY O 63 PHE O 65 5 3 HELIX 3 3 SER O 109 LYS O 117 1 9 HELIX 4 4 GLY O 120 THR O 129 1 10 HELIX 5 5 SER O 138 ILE O 149 1 12 HELIX 6 6 GLU O 154 GLY O 159 5 6 HELIX 7 7 ILE O 166 LYS O 173 1 8 HELIX 8 8 ASP O 183 THR O 190 1 8 HELIX 9 9 GLN O 202 LEU O 208 5 7 HELIX 10 10 ASP O 246 GLN O 254 1 9 HELIX 11 11 GLY O 311 ASP O 319 1 9 HELIX 12 12 THR O 326 GLU O 331 5 6 HELIX 13 13 GLY O 353 TRP O 357 5 5 HELIX 14 14 ASP O 376 GLY O 401 1 26 HELIX 15 15 GLY O 412 LYS O 415 5 4 HELIX 16 16 ASN O 416 ASP O 428 1 13 HELIX 17 17 THR O 439 LEU O 447 1 9 HELIX 18 18 GLU O 460 MET O 464 5 5 HELIX 19 19 ARG O 480 GLU O 485 1 6 HELIX 20 20 GLY O 486 GLN O 489 5 4 HELIX 21 21 ASN X 49 ALA X 62 1 14 HELIX 22 22 GLY X 63 SER X 68 5 6 HELIX 23 23 ALA X 113 VAL X 118 1 6 HELIX 24 24 THR X 122 GLU X 127 5 6 HELIX 25 25 PHE X 137 ASP X 147 1 11 HELIX 26 26 GLY X 151 ASN X 158 1 8 HELIX 27 27 THR X 165 ASP X 176 1 12 HELIX 28 28 ASP X 183 ALA X 187 5 5 HELIX 29 29 ASP X 201 LEU X 208 1 8 HELIX 30 30 GLY X 245 GLN X 254 1 10 HELIX 31 31 SER X 312 ASP X 319 1 8 HELIX 32 32 PRO X 328 ALA X 334 1 7 HELIX 33 33 VAL X 378 GLY X 401 1 24 HELIX 34 34 LEU X 419 LEU X 427 1 9 HELIX 35 35 GLU X 438 VAL X 452 1 15 HELIX 36 36 ARG X 480 VAL X 491 1 12 SHEET 1 A 4 ILE O 21 PHE O 22 0 SHEET 2 A 4 VAL O 7 ASP O 11 -1 N VAL O 7 O PHE O 22 SHEET 3 A 4 GLY O 79 ASN O 82 1 O THR O 81 N ILE O 10 SHEET 4 A 4 ALA O 241 GLY O 245 1 O ALA O 244 N ILE O 80 SHEET 1 B 2 SER O 17 ARG O 18 0 SHEET 2 B 2 GLN O 33 LYS O 34 -1 O LYS O 34 N SER O 17 SHEET 1 C 2 THR O 87 ASP O 91 0 SHEET 2 C 2 LEU O 161 THR O 165 -1 O GLY O 164 N VAL O 88 SHEET 1 D 4 ALA O 270 PHE O 271 0 SHEET 2 D 4 LYS O 263 TYR O 266 -1 O THR O 265 N PHE O 271 SHEET 3 D 4 LEU O 407 VAL O 409 1 O LYS O 408 N ASN O 264 SHEET 4 D 4 VAL O 431 ARG O 433 1 O GLN O 432 N LEU O 407 SHEET 1 E 2 THR O 290 TYR O 293 0 SHEET 2 E 2 VAL O 299 ALA O 302 -1 O TYR O 300 N GLY O 292 SHEET 1 F 3 ALA X 19 ILE X 21 0 SHEET 2 F 3 MET X 8 ILE X 10 -1 N ALA X 9 O ILE X 20 SHEET 3 F 3 ILE X 78 ILE X 80 1 O GLY X 79 N ILE X 10 SHEET 1 G 2 ILE X 262 ASN X 264 0 SHEET 2 G 2 LEU X 407 VAL X 409 1 O LYS X 408 N ILE X 262 SHEET 1 H 3 VAL X 273 GLY X 277 0 SHEET 2 H 3 TYR X 300 GLU X 304 -1 O TYR X 301 N GLY X 277 SHEET 3 H 3 LEU X 288 GLY X 292 -1 N LEU X 288 O GLU X 304 SITE 1 AC1 3 ARG O 84 GLU O 85 TRP O 104 SITE 1 AC2 8 GLN X 83 ARG X 84 GLU X 85 TRP X 104 SITE 2 AC2 8 TYR X 136 ASP X 246 GLN X 247 PHE X 271 CRYST1 68.010 107.670 201.450 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014704 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009288 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004964 0.00000