data_1XUW # _entry.id 1XUW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1XUW pdb_00001xuw 10.2210/pdb1xuw/pdb NDB UD0056 ? ? RCSB RCSB030790 ? ? WWPDB D_1000030790 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1XUW _pdbx_database_status.recvd_initial_deposition_date 2004-10-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pattanayek, R.' 1 'Sethaphong, L.' 2 'Pan, C.' 3 'Prhavc, M.' 4 'Prakash, T.P.' 5 'Manoharan, M.' 6 'Egli, M.' 7 # _citation.id primary _citation.title ;Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogues. ; _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 126 _citation.page_first 15006 _citation.page_last 15007 _citation.year 2004 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15547979 _citation.pdbx_database_id_DOI 10.1021/ja044637k # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pattanayek, R.' 1 ? primary 'Sethaphong, L.' 2 ? primary 'Pan, C.' 3 ? primary 'Prhavc, M.' 4 ? primary 'Prakash, T.P.' 5 ? primary 'Manoharan, M.' 6 ? primary 'Egli, M.' 7 ? # _cell.entry_id 1XUW _cell.length_a 24.599 _cell.length_b 44.876 _cell.length_c 46.305 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XUW _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*CP*GP*TP*AP*(NMT)P*AP*CP*GP*C)-3') ; 3120.072 2 ? ? ? ? 2 water nat water 18.015 153 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(DC)(DG)(DT)(DA)(NMT)(DA)(DC)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GCGTATACGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DG n 1 4 DT n 1 5 DA n 1 6 NMT n 1 7 DA n 1 8 DC n 1 9 DG n 1 10 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'synthetically created' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1XUW _struct_ref.pdbx_db_accession 1XUW _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1XUW A 1 ? 10 ? 1XUW 1 ? 10 ? 1 10 2 1 1XUW B 1 ? 10 ? 1XUW 111 ? 120 ? 111 120 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NMT 'DNA linking' n '1-(O2-(METHYLCARBAMOYL)-O5-HYDROXYPHOSPHINYL-BETA-D-RIBOFURANOSYL)THYMINE' ? 'C12 H20 N3 O10 P' 397.275 # _exptl.entry_id 1XUW _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4. _exptl_crystal.density_percent_sol 40.0 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;1mM 10mer, 40mM sodium cacodylate, 12 mM spermine 4HCl, 80mM potassium chloride, 10% MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2002-11-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.96297 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 5ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 5ID-B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.96297 # _reflns.entry_id 1XUW _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.25 _reflns.d_resolution_low 30.0 _reflns.number_all 14402 _reflns.number_obs 14402 _reflns.percent_possible_obs 97.4 _reflns.pdbx_Rmerge_I_obs 0.077 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 29.3 _reflns.pdbx_redundancy 2.6 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.25 _reflns_shell.d_res_low 1.29 _reflns_shell.percent_possible_all 96.0 _reflns_shell.Rmerge_I_obs 0.254 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 6.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1389 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1XUW _refine.ls_d_res_high 1.25 _refine.ls_d_res_low 30.0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 13637 _refine.ls_number_reflns_obs 13637 _refine.ls_number_reflns_R_free 711 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_all 0.153 _refine.ls_R_factor_obs 0.153 _refine.ls_R_factor_R_work 0.153 _refine.ls_R_factor_R_free 0.221 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1DPL _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 416 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 153 _refine_hist.number_atoms_total 569 _refine_hist.d_res_high 1.25 _refine_hist.d_res_low 30.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.020 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1XUW _struct.title ;Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogs ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1XUW _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'RNA mimetic methylcarbamate amide analog, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details 'Decamer duplex' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DA 5 "O3'" ? ? ? 1_555 A NMT 6 P ? ? A DA 5 A NMT 6 1_555 ? ? ? ? ? ? ? 1.617 ? ? covale2 covale both ? A NMT 6 "O3'" ? ? ? 1_555 A DA 7 P ? ? A NMT 6 A DA 7 1_555 ? ? ? ? ? ? ? 1.625 ? ? covale3 covale both ? B DA 5 "O3'" ? ? ? 1_555 B NMT 6 P ? ? B DA 115 B NMT 116 1_555 ? ? ? ? ? ? ? 1.576 ? ? covale4 covale both ? B NMT 6 "O3'" ? ? ? 1_555 B DA 7 P ? ? B NMT 116 B DA 117 1_555 ? ? ? ? ? ? ? 1.577 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 1 B DC 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 1 B DC 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 1 B DC 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 3 B DC 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 3 B DC 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 3 B DC 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 4 B DA 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 4 B DA 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B NMT 6 N3 ? ? A DA 5 B NMT 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B NMT 6 O4 ? ? A DA 5 B NMT 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A NMT 6 N3 ? ? ? 1_555 B DA 5 N1 ? ? A NMT 6 B DA 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A NMT 6 O4 ? ? ? 1_555 B DA 5 N6 ? ? A NMT 6 B DA 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 7 B DT 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 7 B DT 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 8 B DG 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 8 B DG 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 8 B DG 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 9 B DC 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 9 B DC 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 9 B DC 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 10 B DG 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 10 B DG 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 10 B DG 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _database_PDB_matrix.entry_id 1XUW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1XUW _atom_sites.fract_transf_matrix[1][1] 0.040652 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022284 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021596 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG GUA A . n A 1 2 DC 2 2 2 DC CYT A . n A 1 3 DG 3 3 3 DG GUA A . n A 1 4 DT 4 4 4 DT THY A . n A 1 5 DA 5 5 5 DA ADE A . n A 1 6 NMT 6 6 6 NMT THC A . n A 1 7 DA 7 7 7 DA ADE A . n A 1 8 DC 8 8 8 DC CYT A . n A 1 9 DG 9 9 9 DG GUA A . n A 1 10 DC 10 10 10 DC CYT A . n B 1 1 DG 1 111 111 DG GUA B . n B 1 2 DC 2 112 112 DC CYT B . n B 1 3 DG 3 113 113 DG GUA B . n B 1 4 DT 4 114 114 DT THY B . n B 1 5 DA 5 115 115 DA ADE B . n B 1 6 NMT 6 116 116 NMT THC B . n B 1 7 DA 7 117 117 DA ADE B . n B 1 8 DC 8 118 118 DC CYT B . n B 1 9 DG 9 119 119 DG GUA B . n B 1 10 DC 10 120 120 DC CYT B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 1001 1001 HOH HOH A . C 2 HOH 2 1002 1002 HOH HOH A . C 2 HOH 3 1004 1004 HOH HOH A . C 2 HOH 4 1005 1005 HOH HOH A . C 2 HOH 5 1006 1006 HOH HOH A . C 2 HOH 6 1007 1007 HOH HOH A . C 2 HOH 7 1009 1009 HOH HOH A . C 2 HOH 8 1011 1011 HOH HOH A . C 2 HOH 9 1012 1012 HOH HOH A . C 2 HOH 10 1013 1013 HOH HOH A . C 2 HOH 11 1014 1014 HOH HOH A . C 2 HOH 12 1015 1015 HOH HOH A . C 2 HOH 13 1016 1016 HOH HOH A . C 2 HOH 14 1019 1019 HOH HOH A . C 2 HOH 15 1022 1022 HOH HOH A . C 2 HOH 16 1023 1023 HOH HOH A . C 2 HOH 17 1025 1025 HOH HOH A . C 2 HOH 18 1026 1026 HOH HOH A . C 2 HOH 19 1027 1027 HOH HOH A . C 2 HOH 20 1028 1028 HOH HOH A . C 2 HOH 21 1029 1029 HOH HOH A . C 2 HOH 22 1032 1032 HOH HOH A . C 2 HOH 23 1034 1034 HOH HOH A . C 2 HOH 24 1036 1036 HOH HOH A . C 2 HOH 25 1037 1037 HOH HOH A . C 2 HOH 26 1038 1038 HOH HOH A . C 2 HOH 27 1040 1040 HOH HOH A . C 2 HOH 28 1042 1042 HOH HOH A . C 2 HOH 29 1043 1043 HOH HOH A . C 2 HOH 30 1044 1044 HOH HOH A . C 2 HOH 31 1047 1047 HOH HOH A . C 2 HOH 32 1049 1049 HOH HOH A . C 2 HOH 33 1052 1052 HOH HOH A . C 2 HOH 34 1053 1053 HOH HOH A . C 2 HOH 35 1054 1054 HOH HOH A . C 2 HOH 36 1058 1058 HOH HOH A . C 2 HOH 37 1060 1060 HOH HOH A . C 2 HOH 38 1061 1061 HOH HOH A . C 2 HOH 39 1062 1062 HOH HOH A . C 2 HOH 40 1063 1063 HOH HOH A . C 2 HOH 41 1067 1067 HOH HOH A . C 2 HOH 42 1068 1068 HOH HOH A . C 2 HOH 43 1070 1070 HOH HOH A . C 2 HOH 44 1071 1071 HOH HOH A . C 2 HOH 45 1075 1075 HOH HOH A . C 2 HOH 46 1078 1078 HOH HOH A . C 2 HOH 47 1083 1083 HOH HOH A . C 2 HOH 48 1084 1084 HOH HOH A . C 2 HOH 49 1086 1086 HOH HOH A . C 2 HOH 50 1087 1087 HOH HOH A . C 2 HOH 51 1089 1089 HOH HOH A . C 2 HOH 52 1091 1091 HOH HOH A . C 2 HOH 53 1094 1094 HOH HOH A . C 2 HOH 54 1095 1095 HOH HOH A . C 2 HOH 55 1102 1102 HOH HOH A . C 2 HOH 56 1204 1204 HOH HOH A . C 2 HOH 57 1212 1212 HOH HOH A . C 2 HOH 58 1214 1214 HOH HOH A . C 2 HOH 59 1215 1215 HOH HOH A . C 2 HOH 60 1216 1216 HOH HOH A . C 2 HOH 61 1217 1217 HOH HOH A . C 2 HOH 62 1218 1218 HOH HOH A . C 2 HOH 63 1219 1219 HOH HOH A . C 2 HOH 64 1220 1220 HOH HOH A . C 2 HOH 65 1223 1223 HOH HOH A . C 2 HOH 66 1226 1226 HOH HOH A . C 2 HOH 67 1228 1228 HOH HOH A . C 2 HOH 68 1232 1232 HOH HOH A . C 2 HOH 69 1233 1233 HOH HOH A . C 2 HOH 70 1235 1235 HOH HOH A . C 2 HOH 71 1236 1236 HOH HOH A . C 2 HOH 72 1238 1238 HOH HOH A . C 2 HOH 73 1240 1240 HOH HOH A . C 2 HOH 74 1242 1242 HOH HOH A . C 2 HOH 75 1245 1245 HOH HOH A . C 2 HOH 76 1246 1246 HOH HOH A . C 2 HOH 77 1249 1249 HOH HOH A . C 2 HOH 78 1250 1250 HOH HOH A . C 2 HOH 79 1251 1251 HOH HOH A . C 2 HOH 80 1253 1253 HOH HOH A . C 2 HOH 81 1254 1254 HOH HOH A . D 2 HOH 1 1003 1003 HOH HOH B . D 2 HOH 2 1008 1008 HOH HOH B . D 2 HOH 3 1010 1010 HOH HOH B . D 2 HOH 4 1017 1017 HOH HOH B . D 2 HOH 5 1018 1018 HOH HOH B . D 2 HOH 6 1020 1020 HOH HOH B . D 2 HOH 7 1021 1021 HOH HOH B . D 2 HOH 8 1024 1024 HOH HOH B . D 2 HOH 9 1030 1030 HOH HOH B . D 2 HOH 10 1031 1031 HOH HOH B . D 2 HOH 11 1033 1033 HOH HOH B . D 2 HOH 12 1035 1035 HOH HOH B . D 2 HOH 13 1039 1039 HOH HOH B . D 2 HOH 14 1041 1041 HOH HOH B . D 2 HOH 15 1045 1045 HOH HOH B . D 2 HOH 16 1046 1046 HOH HOH B . D 2 HOH 17 1048 1048 HOH HOH B . D 2 HOH 18 1050 1050 HOH HOH B . D 2 HOH 19 1051 1051 HOH HOH B . D 2 HOH 20 1055 1055 HOH HOH B . D 2 HOH 21 1056 1056 HOH HOH B . D 2 HOH 22 1057 1057 HOH HOH B . D 2 HOH 23 1059 1059 HOH HOH B . D 2 HOH 24 1064 1064 HOH HOH B . D 2 HOH 25 1065 1065 HOH HOH B . D 2 HOH 26 1066 1066 HOH HOH B . D 2 HOH 27 1069 1069 HOH HOH B . D 2 HOH 28 1072 1072 HOH HOH B . D 2 HOH 29 1073 1073 HOH HOH B . D 2 HOH 30 1074 1074 HOH HOH B . D 2 HOH 31 1079 1079 HOH HOH B . D 2 HOH 32 1080 1080 HOH HOH B . D 2 HOH 33 1081 1081 HOH HOH B . D 2 HOH 34 1082 1082 HOH HOH B . D 2 HOH 35 1085 1085 HOH HOH B . D 2 HOH 36 1088 1088 HOH HOH B . D 2 HOH 37 1090 1090 HOH HOH B . D 2 HOH 38 1092 1092 HOH HOH B . D 2 HOH 39 1093 1093 HOH HOH B . D 2 HOH 40 1096 1096 HOH HOH B . D 2 HOH 41 1097 1097 HOH HOH B . D 2 HOH 42 1098 1098 HOH HOH B . D 2 HOH 43 1099 1099 HOH HOH B . D 2 HOH 44 1100 1100 HOH HOH B . D 2 HOH 45 1101 1101 HOH HOH B . D 2 HOH 46 1202 1202 HOH HOH B . D 2 HOH 47 1203 1203 HOH HOH B . D 2 HOH 48 1205 1205 HOH HOH B . D 2 HOH 49 1208 1208 HOH HOH B . D 2 HOH 50 1211 1211 HOH HOH B . D 2 HOH 51 1213 1213 HOH HOH B . D 2 HOH 52 1221 1221 HOH HOH B . D 2 HOH 53 1222 1222 HOH HOH B . D 2 HOH 54 1224 1224 HOH HOH B . D 2 HOH 55 1225 1225 HOH HOH B . D 2 HOH 56 1227 1227 HOH HOH B . D 2 HOH 57 1229 1229 HOH HOH B . D 2 HOH 58 1230 1230 HOH HOH B . D 2 HOH 59 1231 1231 HOH HOH B . D 2 HOH 60 1234 1234 HOH HOH B . D 2 HOH 61 1237 1237 HOH HOH B . D 2 HOH 62 1239 1239 HOH HOH B . D 2 HOH 63 1241 1241 HOH HOH B . D 2 HOH 64 1243 1243 HOH HOH B . D 2 HOH 65 1244 1244 HOH HOH B . D 2 HOH 66 1247 1247 HOH HOH B . D 2 HOH 67 1248 1248 HOH HOH B . D 2 HOH 68 1252 1252 HOH HOH B . D 2 HOH 69 1255 1255 HOH HOH B . D 2 HOH 70 1256 1256 HOH HOH B . D 2 HOH 71 1257 1257 HOH HOH B . D 2 HOH 72 1258 1258 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A NMT 6 A NMT 6 ? DT ? 2 B NMT 6 B NMT 116 ? DT ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-12-14 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 1 4 2019-07-24 6 'Structure model' 1 5 2023-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' 7 6 'Structure model' 'Data collection' 8 6 'Structure model' 'Database references' 9 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' software 3 5 'Structure model' struct_conn 4 6 'Structure model' chem_comp_atom 5 6 'Structure model' chem_comp_bond 6 6 'Structure model' database_2 7 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_software.classification' 2 5 'Structure model' '_software.name' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 6 'Structure model' '_database_2.pdbx_DOI' 5 6 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL-97 refinement . ? 1 SCALEPACK 'data scaling' . ? 2 CNS refinement . ? 3 MAR345 'data collection' . ? 4 CNS phasing . ? 5 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 1032 ? ? 1_555 O B HOH 1066 ? ? 4_565 1.99 2 1 O A HOH 1086 ? ? 1_555 O A HOH 1095 ? ? 3_655 2.18 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C2'" A DC 2 ? ? "C1'" A DC 2 ? ? 1.451 1.518 -0.067 0.010 N 2 1 "C2'" A DG 3 ? ? "C1'" A DG 3 ? ? 1.417 1.518 -0.101 0.010 N 3 1 "C2'" A DT 4 ? ? "C1'" A DT 4 ? ? 1.425 1.518 -0.093 0.010 N 4 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? 1.517 1.420 0.097 0.011 N 5 1 "C2'" A DG 9 ? ? "C1'" A DG 9 ? ? 1.433 1.518 -0.085 0.010 N 6 1 "C2'" A DC 10 ? ? "C1'" A DC 10 ? ? 1.437 1.518 -0.081 0.010 N 7 1 "C2'" B DG 111 ? ? "C1'" B DG 111 ? ? 1.443 1.518 -0.075 0.010 N 8 1 "C2'" B DG 119 ? ? "C1'" B DG 119 ? ? 1.409 1.518 -0.109 0.010 N 9 1 "C2'" B DC 120 ? ? "C1'" B DC 120 ? ? 1.424 1.518 -0.094 0.010 N 10 1 "O4'" B DC 120 ? ? "C1'" B DC 120 ? ? 1.487 1.420 0.067 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C5 A DG 1 ? ? C6 A DG 1 ? ? O6 A DG 1 ? ? 132.71 128.60 4.11 0.60 N 2 1 C6 A DC 2 ? ? N1 A DC 2 ? ? C2 A DC 2 ? ? 117.53 120.30 -2.77 0.40 N 3 1 C5 A DC 2 ? ? C6 A DC 2 ? ? N1 A DC 2 ? ? 124.03 121.00 3.03 0.50 N 4 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 101.98 108.00 -6.02 0.70 N 5 1 N1 A DG 3 ? ? C6 A DG 3 ? ? O6 A DG 3 ? ? 115.41 119.90 -4.49 0.60 N 6 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 103.65 108.00 -4.35 0.70 N 7 1 "O4'" A DA 5 ? ? "C4'" A DA 5 ? ? "C3'" A DA 5 ? ? 100.79 104.50 -3.71 0.40 N 8 1 "O4'" A DC 8 ? ? "C4'" A DC 8 ? ? "C3'" A DC 8 ? ? 101.99 104.50 -2.51 0.40 N 9 1 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.00 108.30 2.70 0.30 N 10 1 C5 A DC 8 ? ? C6 A DC 8 ? ? N1 A DC 8 ? ? 124.49 121.00 3.49 0.50 N 11 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 102.66 108.00 -5.34 0.70 N 12 1 C4 A DC 10 ? ? C5 A DC 10 ? ? C6 A DC 10 ? ? 114.36 117.40 -3.04 0.50 N 13 1 "O4'" B DG 113 ? ? "C4'" B DG 113 ? ? "C3'" B DG 113 ? ? 101.56 104.50 -2.94 0.40 N 14 1 P B DA 117 ? ? "O5'" B DA 117 ? ? "C5'" B DA 117 ? ? 108.99 120.90 -11.91 1.60 N 15 1 "O4'" B DC 118 ? ? "C4'" B DC 118 ? ? "C3'" B DC 118 ? ? 101.25 104.50 -3.25 0.40 N 16 1 "O4'" B DG 119 ? ? "C1'" B DG 119 ? ? "C2'" B DG 119 ? ? 110.05 106.80 3.25 0.50 N 17 1 "O4'" B DG 119 ? ? "C1'" B DG 119 ? ? N9 B DG 119 ? ? 99.56 108.00 -8.44 0.70 N 18 1 N3 B DG 119 ? ? C4 B DG 119 ? ? C5 B DG 119 ? ? 131.76 128.60 3.16 0.50 N 19 1 C5 B DG 119 ? ? N7 B DG 119 ? ? C8 B DG 119 ? ? 107.44 104.30 3.14 0.50 N 20 1 N7 B DG 119 ? ? C8 B DG 119 ? ? N9 B DG 119 ? ? 109.81 113.10 -3.29 0.50 N 21 1 C5 B DG 119 ? ? C6 B DG 119 ? ? O6 B DG 119 ? ? 132.82 128.60 4.22 0.60 N 22 1 "O4'" B DC 120 ? ? "C1'" B DC 120 ? ? N1 B DC 120 ? ? 101.93 108.00 -6.07 0.70 N # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 "C7'" ? A NMT 6 ? PLANAR . 2 1 "C7'" ? A NMT 6 ? PLANAR . 3 1 "C7'" ? B NMT 116 ? PLANAR . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 NMT P P N N 147 NMT OP3 O N N 148 NMT OP2 O N N 149 NMT "O5'" O N N 150 NMT N1 N N N 151 NMT C6 C N N 152 NMT C2 C N N 153 NMT O2 O N N 154 NMT N3 N N N 155 NMT C4 C N N 156 NMT O4 O N N 157 NMT C5 C N N 158 NMT C5M C N N 159 NMT "C2'" C N R 160 NMT "C5'" C N N 161 NMT "C4'" C N R 162 NMT "O4'" O N N 163 NMT "C1'" C N R 164 NMT "C3'" C N R 165 NMT "O3'" O N N 166 NMT "O6'" O N N 167 NMT "C7'" C N S 168 NMT "N8'" N N N 169 NMT "C9'" C N N 170 NMT "O7'" O N N 171 NMT OP1 O N N 172 NMT HOP3 H N N 173 NMT HOP2 H N N 174 NMT H6 H N N 175 NMT HN3 H N N 176 NMT H71 H N N 177 NMT H72 H N N 178 NMT H73 H N N 179 NMT "H2'" H N N 180 NMT "H5'" H N N 181 NMT "H5''" H N N 182 NMT "H4'" H N N 183 NMT "H1'" H N N 184 NMT "H3'" H N N 185 NMT "HO3'" H N N 186 NMT "H7'" H N N 187 NMT "H8'" H N N 188 NMT "H9'1" H N N 189 NMT "H9'2" H N N 190 NMT "H9'3" H N N 191 NMT H1 H N N 192 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 NMT P OP3 sing N N 152 NMT P OP2 sing N N 153 NMT P "O5'" sing N N 154 NMT P OP1 doub N N 155 NMT OP3 HOP3 sing N N 156 NMT OP2 HOP2 sing N N 157 NMT "O5'" "C5'" sing N N 158 NMT N1 C6 sing N N 159 NMT N1 C2 sing N N 160 NMT N1 "C1'" sing N N 161 NMT C6 C5 doub N N 162 NMT C6 H6 sing N N 163 NMT C2 O2 doub N N 164 NMT C2 N3 sing N N 165 NMT N3 C4 sing N N 166 NMT N3 HN3 sing N N 167 NMT C4 O4 doub N N 168 NMT C4 C5 sing N N 169 NMT C5 C5M sing N N 170 NMT C5M H71 sing N N 171 NMT C5M H72 sing N N 172 NMT C5M H73 sing N N 173 NMT "C2'" "C1'" sing N N 174 NMT "C2'" "C3'" sing N N 175 NMT "C2'" "O6'" sing N N 176 NMT "C2'" "H2'" sing N N 177 NMT "C5'" "C4'" sing N N 178 NMT "C5'" "H5'" sing N N 179 NMT "C5'" "H5''" sing N N 180 NMT "C4'" "O4'" sing N N 181 NMT "C4'" "C3'" sing N N 182 NMT "C4'" "H4'" sing N N 183 NMT "O4'" "C1'" sing N N 184 NMT "C1'" "H1'" sing N N 185 NMT "C3'" "O3'" sing N N 186 NMT "C3'" "H3'" sing N N 187 NMT "O3'" "HO3'" sing N N 188 NMT "O6'" "C7'" sing N N 189 NMT "C7'" "N8'" sing N N 190 NMT "C7'" "O7'" sing N N 191 NMT "C7'" "H7'" sing N N 192 NMT "N8'" "C9'" sing N N 193 NMT "N8'" "H8'" sing N N 194 NMT "C9'" "H9'1" sing N N 195 NMT "C9'" "H9'2" sing N N 196 NMT "C9'" "H9'3" sing N N 197 NMT "O7'" H1 sing N N 198 # _ndb_struct_conf_na.entry_id 1XUW _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 10 1_555 -0.325 -0.090 0.132 2.500 -4.340 -0.241 1 A_DG1:DC120_B A 1 ? B 120 ? 19 1 1 A DC 2 1_555 B DG 9 1_555 -0.018 0.002 0.153 4.506 -14.626 -1.201 2 A_DC2:DG119_B A 2 ? B 119 ? 19 1 1 A DG 3 1_555 B DC 8 1_555 -0.228 -0.121 0.126 -7.525 -14.440 -0.101 3 A_DG3:DC118_B A 3 ? B 118 ? 19 1 1 A DT 4 1_555 B DA 7 1_555 -0.097 -0.086 -0.029 -5.766 -15.345 -0.006 4 A_DT4:DA117_B A 4 ? B 117 ? 20 1 1 A DA 5 1_555 B NMT 6 1_555 0.141 -0.133 0.149 -3.834 -12.241 -1.978 5 A_DA5:NMT116_B A 5 ? B 116 ? 20 1 1 A NMT 6 1_555 B DA 5 1_555 -0.018 -0.098 0.185 3.433 -12.050 3.240 6 A_NMT6:DA115_B A 6 ? B 115 ? 20 1 1 A DA 7 1_555 B DT 4 1_555 0.006 -0.109 -0.067 6.569 -11.010 1.702 7 A_DA7:DT114_B A 7 ? B 114 ? 20 1 1 A DC 8 1_555 B DG 3 1_555 0.208 -0.162 -0.164 11.768 -13.778 0.566 8 A_DC8:DG113_B A 8 ? B 113 ? 19 1 1 A DG 9 1_555 B DC 2 1_555 -0.203 -0.156 0.052 -5.012 -9.954 -0.220 9 A_DG9:DC112_B A 9 ? B 112 ? 19 1 1 A DC 10 1_555 B DG 1 1_555 0.208 -0.126 0.154 -3.217 4.531 -0.895 10 A_DC10:DG111_B A 10 ? B 111 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 10 1_555 A DC 2 1_555 B DG 9 1_555 0.291 -1.584 3.275 1.173 -2.073 37.689 -2.176 -0.296 3.362 -3.205 -1.813 37.762 1 AA_DG1DC2:DG119DC120_BB A 1 ? B 120 ? A 2 ? B 119 ? 1 A DC 2 1_555 B DG 9 1_555 A DG 3 1_555 B DC 8 1_555 0.274 -2.191 3.375 1.122 10.078 27.455 -6.349 -0.318 2.443 20.375 -2.268 29.234 2 AA_DC2DG3:DC118DG119_BB A 2 ? B 119 ? A 3 ? B 118 ? 1 A DG 3 1_555 B DC 8 1_555 A DT 4 1_555 B DA 7 1_555 -1.180 -1.603 3.177 -1.013 5.507 34.951 -3.400 1.801 2.930 9.096 1.674 35.383 3 AA_DG3DT4:DA117DC118_BB A 3 ? B 118 ? A 4 ? B 117 ? 1 A DT 4 1_555 B DA 7 1_555 A DA 5 1_555 B NMT 6 1_555 0.765 -1.536 3.158 1.123 17.820 25.158 -5.788 -1.259 1.745 35.732 -2.253 30.766 4 AA_DT4DA5:NMT116DA117_BB A 4 ? B 117 ? A 5 ? B 116 ? 1 A DA 5 1_555 B NMT 6 1_555 A NMT 6 1_555 B DA 5 1_555 0.518 -1.346 3.142 0.988 6.446 32.166 -3.406 -0.760 2.841 11.487 -1.761 32.803 5 AA_DA5NMT6:DA115NMT116_BB A 5 ? B 116 ? A 6 ? B 115 ? 1 A NMT 6 1_555 B DA 5 1_555 A DA 7 1_555 B DT 4 1_555 -0.307 -1.263 3.054 1.267 14.643 30.351 -4.213 0.707 2.214 26.130 -2.261 33.647 6 AA_NMT6DA7:DT114DA115_BB A 6 ? B 115 ? A 7 ? B 114 ? 1 A DA 7 1_555 B DT 4 1_555 A DC 8 1_555 B DG 3 1_555 0.249 -1.536 3.292 0.292 5.675 31.055 -3.842 -0.406 2.974 10.489 -0.539 31.558 7 AA_DA7DC8:DG113DT114_BB A 7 ? B 114 ? A 8 ? B 113 ? 1 A DC 8 1_555 B DG 3 1_555 A DG 9 1_555 B DC 2 1_555 -0.400 -1.961 3.553 -2.185 13.404 30.174 -5.653 0.345 2.503 24.262 3.955 33.025 8 AA_DC8DG9:DC112DG113_BB A 8 ? B 113 ? A 9 ? B 112 ? 1 A DG 9 1_555 B DC 2 1_555 A DC 10 1_555 B DG 1 1_555 0.232 -1.696 3.348 0.793 1.688 35.854 -2.996 -0.262 3.271 2.740 -1.286 35.901 9 AA_DG9DC10:DG111DC112_BB A 9 ? B 112 ? A 10 ? B 111 ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1DPL _pdbx_initial_refinement_model.details ? #