HEADER OXIDOREDUCTASE 28-OCT-04 1XVQ TITLE CRYSTAL STRUCTURE OF THIOL PEROXIDASE FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL PEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.11.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: TPX; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 DERIVATIVE KEYWDS THIOREDOXIN FOLD, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, TB STRUCTURAL GENOMICS CONSORTIUM, TBSGC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR B.S.RHO,J.D.PEDELACQ,L.W.HUNG,J.M.HOLTON,D.VIGIL,S.I.KIM,M.S.PARK, AUTHOR 2 T.C.TERWILLIGER,TB STRUCTURAL GENOMICS CONSORTIUM (TBSGC) REVDAT 6 03-APR-24 1XVQ 1 REMARK SEQADV LINK REVDAT 5 16-NOV-11 1XVQ 1 VERSN HETATM REVDAT 4 24-FEB-09 1XVQ 1 VERSN REVDAT 3 29-AUG-06 1XVQ 1 JRNL REVDAT 2 01-FEB-05 1XVQ 1 AUTHOR KEYWDS REMARK REVDAT 1 07-DEC-04 1XVQ 0 JRNL AUTH B.S.RHO,L.W.HUNG,J.M.HOLTON,D.VIGIL,S.I.KIM,M.S.PARK, JRNL AUTH 2 T.C.TERWILLIGER,J.D.PEDELACQ JRNL TITL FUNCTIONAL AND STRUCTURAL CHARACTERIZATION OF A THIOL JRNL TITL 2 PEROXIDASE FROM MYCOBACTERIUM TUBERCULOSIS. JRNL REF J.MOL.BIOL. V. 361 850 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16884737 JRNL DOI 10.1016/J.JMB.2006.05.076 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2853967.760 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 16357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1608 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2379 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 288 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1143 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 156 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.38000 REMARK 3 B22 (A**2) : 1.38000 REMARK 3 B33 (A**2) : -2.76000 REMARK 3 B12 (A**2) : 0.62000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.09 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.14 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.030 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.080 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.900 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.640 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.630 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.49 REMARK 3 BSOL : 65.85 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1XVQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1000030819. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23124 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: RV1932 DE NOVO SE-MET STRUCTURE (NOT PUBLISHED) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, SODIUM ACETATE, AMMONIUM REMARK 280 ACETATE, YTTRIUM CHLORIDE, 2-MERCAPTOETHANOL, PH 5.3, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 32.27750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 18.63542 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 65.59600 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 32.27750 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 18.63542 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 65.59600 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 32.27750 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 18.63542 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 65.59600 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 32.27750 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 18.63542 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 65.59600 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 32.27750 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 18.63542 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 65.59600 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 32.27750 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 18.63542 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 65.59600 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 37.27085 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 131.19200 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 37.27085 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 131.19200 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 37.27085 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 131.19200 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 37.27085 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 131.19200 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 37.27085 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 131.19200 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 37.27085 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 131.19200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 64.55500 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 -37.27085 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 65.59600 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 Y YT3 A 202 LIES ON A SPECIAL POSITION. REMARK 375 N NH4 A 301 LIES ON A SPECIAL POSITION. REMARK 375 N NH4 A 302 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 495 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 94 REMARK 465 ALA A 95 REMARK 465 GLU A 96 REMARK 465 GLY A 97 REMARK 465 THR A 98 REMARK 465 GLU A 99 REMARK 465 GLY A 168 REMARK 465 SER A 169 REMARK 465 HIS A 170 REMARK 465 HIS A 171 REMARK 465 HIS A 172 REMARK 465 HIS A 173 REMARK 465 HIS A 174 REMARK 465 HIS A 175 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 59 CG1 CG2 REMARK 470 CYS A 60 CB SG REMARK 470 ARG A 91 CG CD NE CZ NH1 NH2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YT3 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YT3 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YT3 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH4 A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RV1932 RELATED DB: TARGETDB DBREF 1XVQ A 1 165 UNP P66952 TPX_MYCTU 1 165 SEQADV 1XVQ CSX A 80 UNP P66952 CYS 80 MODIFIED RESIDUE SEQADV 1XVQ THR A 166 UNP P66952 CLONING ARTIFACT SEQADV 1XVQ SER A 167 UNP P66952 CLONING ARTIFACT SEQADV 1XVQ GLY A 168 UNP P66952 CLONING ARTIFACT SEQADV 1XVQ SER A 169 UNP P66952 CLONING ARTIFACT SEQADV 1XVQ HIS A 170 UNP P66952 EXPRESSION TAG SEQADV 1XVQ HIS A 171 UNP P66952 EXPRESSION TAG SEQADV 1XVQ HIS A 172 UNP P66952 EXPRESSION TAG SEQADV 1XVQ HIS A 173 UNP P66952 EXPRESSION TAG SEQADV 1XVQ HIS A 174 UNP P66952 EXPRESSION TAG SEQADV 1XVQ HIS A 175 UNP P66952 EXPRESSION TAG SEQRES 1 A 175 MET ALA GLN ILE THR LEU ARG GLY ASN ALA ILE ASN THR SEQRES 2 A 175 VAL GLY GLU LEU PRO ALA VAL GLY SER PRO ALA PRO ALA SEQRES 3 A 175 PHE THR LEU THR GLY GLY ASP LEU GLY VAL ILE SER SER SEQRES 4 A 175 ASP GLN PHE ARG GLY LYS SER VAL LEU LEU ASN ILE PHE SEQRES 5 A 175 PRO SER VAL ASP THR PRO VAL CYS ALA THR SER VAL ARG SEQRES 6 A 175 THR PHE ASP GLU ARG ALA ALA ALA SER GLY ALA THR VAL SEQRES 7 A 175 LEU CSX VAL SER LYS ASP LEU PRO PHE ALA GLN LYS ARG SEQRES 8 A 175 PHE CYS GLY ALA GLU GLY THR GLU ASN VAL MET PRO ALA SEQRES 9 A 175 SER ALA PHE ARG ASP SER PHE GLY GLU ASP TYR GLY VAL SEQRES 10 A 175 THR ILE ALA ASP GLY PRO MET ALA GLY LEU LEU ALA ARG SEQRES 11 A 175 ALA ILE VAL VAL ILE GLY ALA ASP GLY ASN VAL ALA TYR SEQRES 12 A 175 THR GLU LEU VAL PRO GLU ILE ALA GLN GLU PRO ASN TYR SEQRES 13 A 175 GLU ALA ALA LEU ALA ALA LEU GLY ALA THR SER GLY SER SEQRES 14 A 175 HIS HIS HIS HIS HIS HIS MODRES 1XVQ CSX A 80 CYS S-OXY CYSTEINE HET CSX A 80 7 HET YT3 A 201 1 HET YT3 A 202 1 HET YT3 A 203 1 HET NH4 A 301 1 HET NH4 A 302 1 HETNAM CSX S-OXY CYSTEINE HETNAM YT3 YTTRIUM (III) ION HETNAM NH4 AMMONIUM ION FORMUL 1 CSX C3 H7 N O3 S FORMUL 2 YT3 3(Y 3+) FORMUL 5 NH4 2(H4 N 1+) FORMUL 7 HOH *156(H2 O) HELIX 1 1 ASP A 40 ARG A 43 5 4 HELIX 2 2 ALA A 61 SER A 74 1 14 HELIX 3 3 LEU A 85 LYS A 90 1 6 HELIX 4 4 SER A 110 TYR A 115 1 6 HELIX 5 5 ASN A 155 THR A 166 1 12 SHEET 1 A 2 THR A 28 THR A 30 0 SHEET 2 A 2 VAL A 36 SER A 38 -1 O ILE A 37 N LEU A 29 SHEET 1 B 5 VAL A 101 SER A 105 0 SHEET 2 B 5 THR A 77 SER A 82 1 N VAL A 78 O MET A 102 SHEET 3 B 5 VAL A 47 ILE A 51 1 N ASN A 50 O LEU A 79 SHEET 4 B 5 ALA A 131 ILE A 135 -1 O VAL A 133 N LEU A 49 SHEET 5 B 5 VAL A 141 LEU A 146 -1 O ALA A 142 N VAL A 134 LINK C LEU A 79 N CSX A 80 1555 1555 1.33 LINK C CSX A 80 N VAL A 81 1555 1555 1.33 SITE 1 AC1 4 GLU A 16 GLU A 149 YT3 A 203 HOH A 470 SITE 1 AC2 1 ASP A 40 SITE 1 AC3 4 GLU A 16 GLU A 149 YT3 A 201 HOH A 548 SITE 1 AC4 2 ASP A 56 ALA A 88 SITE 1 AC5 1 HOH A 509 CRYST1 64.555 64.555 196.788 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015491 0.008944 0.000000 0.00000 SCALE2 0.000000 0.017887 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005082 0.00000