HEADER TRANSFERASE 28-OCT-04 1XVT TITLE CRYSTAL STRUCTURE OF NATIVE CAIB IN COMPLEX WITH COENZYME A COMPND MOL_ID: 1; COMPND 2 MOLECULE: CROTONOBETAINYL-COA:CARNITINE COA-TRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.8.3.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: CAIB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DL41 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-4T1 KEYWDS CAIB, COA TRANSFERASE, CARNITINE, CROTONOBETAINYL COA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.S.RANGARAJAN,Y.LI,P.IANNUZZI,M.CYGLER,A.MATTE REVDAT 7 15-NOV-23 1XVT 1 REMARK REVDAT 6 23-AUG-23 1XVT 1 REMARK SEQADV LINK REVDAT 5 31-JAN-18 1XVT 1 REMARK REVDAT 4 13-JUL-11 1XVT 1 VERSN REVDAT 3 24-FEB-09 1XVT 1 VERSN REVDAT 2 26-APR-05 1XVT 1 JRNL REVDAT 1 15-MAR-05 1XVT 0 JRNL AUTH E.S.RANGARAJAN,Y.LI,P.IANNUZZI,M.CYGLER,A.MATTE JRNL TITL CRYSTAL STRUCTURE OF ESCHERICHIA COLI CROTONOBETAINYL-COA: JRNL TITL 2 CARNITINE COA-TRANSFERASE (CAIB) AND ITS COMPLEXES WITH COA JRNL TITL 3 AND CARNITINYL-COA. JRNL REF BIOCHEMISTRY V. 44 5728 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 15823031 JRNL DOI 10.1021/BI047656F REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 27309 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1457 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2012 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3028 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 80 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.215 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.190 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.135 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.247 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3155 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4301 ; 1.210 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 401 ; 5.235 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;41.157 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 473 ;15.557 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;15.911 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 468 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2404 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1306 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2156 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 116 ; 0.104 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 85 ; 0.181 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.136 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2061 ; 0.648 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3174 ; 0.881 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1278 ; 1.681 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1127 ; 2.519 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 226 REMARK 3 RESIDUE RANGE : A 323 A 405 REMARK 3 ORIGIN FOR THE GROUP (A): 45.6119 50.6422 10.5882 REMARK 3 T TENSOR REMARK 3 T11: -0.0457 T22: -0.0770 REMARK 3 T33: -0.1739 T12: -0.0305 REMARK 3 T13: 0.0193 T23: 0.0807 REMARK 3 L TENSOR REMARK 3 L11: 1.8333 L22: 2.1130 REMARK 3 L33: 1.4068 L12: -0.7532 REMARK 3 L13: 0.5752 L23: -0.2377 REMARK 3 S TENSOR REMARK 3 S11: -0.0563 S12: -0.2506 S13: -0.1085 REMARK 3 S21: 0.4645 S22: 0.1665 S23: 0.2818 REMARK 3 S31: 0.1020 S32: -0.4119 S33: -0.1102 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 227 A 322 REMARK 3 ORIGIN FOR THE GROUP (A): 64.6321 64.4404 -22.1015 REMARK 3 T TENSOR REMARK 3 T11: -0.2113 T22: 0.0162 REMARK 3 T33: -0.0757 T12: -0.0560 REMARK 3 T13: 0.0275 T23: 0.1433 REMARK 3 L TENSOR REMARK 3 L11: 4.1876 L22: 1.9231 REMARK 3 L33: 3.5625 L12: 0.3345 REMARK 3 L13: -1.6304 L23: -0.0342 REMARK 3 S TENSOR REMARK 3 S11: 0.0857 S12: 0.4065 S13: 0.1262 REMARK 3 S21: -0.1935 S22: 0.1554 S23: 0.0094 REMARK 3 S31: -0.0924 S32: -0.0325 S33: -0.2410 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1XVT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1000030822. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : SILICONE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28766 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 41.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05400 REMARK 200 FOR THE DATA SET : 26.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.56700 REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1XK6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.35M SODIUM CITRATE, 0.1 M TRIS-CL REMARK 280 (PH 7.0), VAPOR DIFFUSION, TEMPERATURE 21K, TEMPERATURE 294.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.22500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.88000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.88000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.11250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.88000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.88000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 123.33750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.88000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.88000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.11250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.88000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.88000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 123.33750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 82.22500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 15380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 ASP A 2 REMARK 465 HIS A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 16 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 46 CG1 CG2 REMARK 470 TRP A 48 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 48 CZ3 CH2 REMARK 470 ILE A 73 CG1 CG2 CD1 REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 ASP A 76 CG OD1 OD2 REMARK 470 GLU A 77 CG CD OE1 OE2 REMARK 470 GLU A 80 CG CD OE1 OE2 REMARK 470 LYS A 84 CG CD CE NZ REMARK 470 GLU A 87 CG CD OE1 OE2 REMARK 470 THR A 88 OG1 CG2 REMARK 470 GLU A 109 CG CD OE1 OE2 REMARK 470 GLN A 113 CG CD OE1 NE2 REMARK 470 ARG A 188 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 189 CG CD OE1 OE2 REMARK 470 THR A 190 OG1 CG2 REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 ASP A 347 CG OD1 OD2 REMARK 470 ARG A 349 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 383 CG CD CE NZ REMARK 470 SER A 388 OG REMARK 470 GLU A 389 CG CD OE1 OE2 REMARK 470 ASN A 390 CG OD1 ND2 REMARK 470 ASP A 391 CG OD1 OD2 REMARK 470 ILE A 392 CG1 CG2 CD1 REMARK 470 GLN A 393 CG CD OE1 NE2 REMARK 470 GLU A 394 CG CD OE1 OE2 REMARK 470 SER A 397 OG REMARK 470 LYS A 398 CG CD CE NZ REMARK 470 GLU A 404 CG CD OE1 OE2 REMARK 470 ASP A 405 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 337 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 23 -126.10 64.31 REMARK 500 ILE A 24 -62.78 -96.53 REMARK 500 ASN A 57 -39.50 -134.36 REMARK 500 ASP A 76 -108.27 43.05 REMARK 500 PRO A 272 -43.73 -23.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XK6 RELATED DB: PDB REMARK 900 NATIVE PROTEIN IN P1 FORM REMARK 900 RELATED ID: 1XK7 RELATED DB: PDB REMARK 900 NATIVE PROTEIN IN C2 FORM REMARK 900 RELATED ID: 1XVU RELATED DB: PDB REMARK 900 D169A MUTANT IN COMPLEX WITH COENZYME A REMARK 900 RELATED ID: 1XVV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CAIB MUTANT D169A IN COMPLEX WITH CARNITYL-COA DBREF 1XVT A 1 405 UNP P31572 CAIB_ECOLI 1 405 SEQADV 1XVT GLY A -2 UNP P31572 CLONING ARTIFACT SEQADV 1XVT SER A -1 UNP P31572 CLONING ARTIFACT SEQADV 1XVT HIS A 0 UNP P31572 CLONING ARTIFACT SEQADV 1XVT MSE A 1 UNP P31572 MET 1 MODIFIED RESIDUE SEQADV 1XVT MSE A 6 UNP P31572 MET 6 MODIFIED RESIDUE SEQADV 1XVT MSE A 32 UNP P31572 MET 32 MODIFIED RESIDUE SEQADV 1XVT MSE A 86 UNP P31572 MET 86 MODIFIED RESIDUE SEQADV 1XVT MSE A 161 UNP P31572 MET 161 MODIFIED RESIDUE SEQADV 1XVT MSE A 200 UNP P31572 MET 200 MODIFIED RESIDUE SEQADV 1XVT MSE A 204 UNP P31572 MET 204 MODIFIED RESIDUE SEQADV 1XVT MSE A 207 UNP P31572 MET 207 MODIFIED RESIDUE SEQADV 1XVT MSE A 212 UNP P31572 MET 212 MODIFIED RESIDUE SEQADV 1XVT MSE A 213 UNP P31572 MET 213 MODIFIED RESIDUE SEQADV 1XVT MSE A 221 UNP P31572 MET 221 MODIFIED RESIDUE SEQADV 1XVT MSE A 225 UNP P31572 MET 225 MODIFIED RESIDUE SEQADV 1XVT MSE A 248 UNP P31572 MET 248 MODIFIED RESIDUE SEQADV 1XVT MSE A 346 UNP P31572 MET 346 MODIFIED RESIDUE SEQADV 1XVT MSE A 357 UNP P31572 MET 357 MODIFIED RESIDUE SEQADV 1XVT MSE A 371 UNP P31572 MET 371 MODIFIED RESIDUE SEQADV 1XVT MSE A 376 UNP P31572 MET 376 MODIFIED RESIDUE SEQRES 1 A 408 GLY SER HIS MSE ASP HIS LEU PRO MSE PRO LYS PHE GLY SEQRES 2 A 408 PRO LEU ALA GLY LEU ARG VAL VAL PHE SER GLY ILE GLU SEQRES 3 A 408 ILE ALA GLY PRO PHE ALA GLY GLN MSE PHE ALA GLU TRP SEQRES 4 A 408 GLY ALA GLU VAL ILE TRP ILE GLU ASN VAL ALA TRP ALA SEQRES 5 A 408 ASP THR ILE ARG VAL GLN PRO ASN TYR PRO GLN LEU SER SEQRES 6 A 408 ARG ARG ASN LEU HIS ALA LEU SER LEU ASN ILE PHE LYS SEQRES 7 A 408 ASP GLU GLY ARG GLU ALA PHE LEU LYS LEU MSE GLU THR SEQRES 8 A 408 THR ASP ILE PHE ILE GLU ALA SER LYS GLY PRO ALA PHE SEQRES 9 A 408 ALA ARG ARG GLY ILE THR ASP GLU VAL LEU TRP GLN HIS SEQRES 10 A 408 ASN PRO LYS LEU VAL ILE ALA HIS LEU SER GLY PHE GLY SEQRES 11 A 408 GLN TYR GLY THR GLU GLU TYR THR ASN LEU PRO ALA TYR SEQRES 12 A 408 ASN THR ILE ALA GLN ALA PHE SER GLY TYR LEU ILE GLN SEQRES 13 A 408 ASN GLY ASP VAL ASP GLN PRO MSE PRO ALA PHE PRO TYR SEQRES 14 A 408 THR ALA ASP TYR PHE SER GLY LEU THR ALA THR THR ALA SEQRES 15 A 408 ALA LEU ALA ALA LEU HIS LYS VAL ARG GLU THR GLY LYS SEQRES 16 A 408 GLY GLU SER ILE ASP ILE ALA MSE TYR GLU VAL MSE LEU SEQRES 17 A 408 ARG MSE GLY GLN TYR PHE MSE MSE ASP TYR PHE ASN GLY SEQRES 18 A 408 GLY GLU MSE CYS PRO ARG MSE SER LYS GLY LYS ASP PRO SEQRES 19 A 408 TYR TYR ALA GLY CYS GLY LEU TYR LYS CYS ALA ASP GLY SEQRES 20 A 408 TYR ILE VAL MSE GLU LEU VAL GLY ILE THR GLN ILE GLU SEQRES 21 A 408 GLU CYS PHE LYS ASP ILE GLY LEU ALA HIS LEU LEU GLY SEQRES 22 A 408 THR PRO GLU ILE PRO GLU GLY THR GLN LEU ILE HIS ARG SEQRES 23 A 408 ILE GLU CYS PRO TYR GLY PRO LEU VAL GLU GLU LYS LEU SEQRES 24 A 408 ASP ALA TRP LEU ALA THR HIS THR ILE ALA GLU VAL LYS SEQRES 25 A 408 GLU ARG PHE ALA GLU LEU ASN ILE ALA CYS ALA LYS VAL SEQRES 26 A 408 LEU THR VAL PRO GLU LEU GLU SER ASN PRO GLN TYR VAL SEQRES 27 A 408 ALA ARG GLU SER ILE THR GLN TRP GLN THR MSE ASP GLY SEQRES 28 A 408 ARG THR CYS LYS GLY PRO ASN ILE MSE PRO LYS PHE LYS SEQRES 29 A 408 ASN ASN PRO GLY GLN ILE TRP ARG GLY MSE PRO SER HIS SEQRES 30 A 408 GLY MSE ASP THR ALA ALA ILE LEU LYS ASN ILE GLY TYR SEQRES 31 A 408 SER GLU ASN ASP ILE GLN GLU LEU VAL SER LYS GLY LEU SEQRES 32 A 408 ALA LYS VAL GLU ASP MODRES 1XVT MSE A 6 MET SELENOMETHIONINE MODRES 1XVT MSE A 32 MET SELENOMETHIONINE MODRES 1XVT MSE A 86 MET SELENOMETHIONINE MODRES 1XVT MSE A 161 MET SELENOMETHIONINE MODRES 1XVT MSE A 200 MET SELENOMETHIONINE MODRES 1XVT MSE A 204 MET SELENOMETHIONINE MODRES 1XVT MSE A 207 MET SELENOMETHIONINE MODRES 1XVT MSE A 212 MET SELENOMETHIONINE MODRES 1XVT MSE A 213 MET SELENOMETHIONINE MODRES 1XVT MSE A 221 MET SELENOMETHIONINE MODRES 1XVT MSE A 225 MET SELENOMETHIONINE MODRES 1XVT MSE A 248 MET SELENOMETHIONINE MODRES 1XVT MSE A 346 MET SELENOMETHIONINE MODRES 1XVT MSE A 357 MET SELENOMETHIONINE MODRES 1XVT MSE A 371 MET SELENOMETHIONINE MODRES 1XVT MSE A 376 MET SELENOMETHIONINE HET MSE A 6 8 HET MSE A 32 8 HET MSE A 86 8 HET MSE A 161 8 HET MSE A 200 8 HET MSE A 204 8 HET MSE A 207 8 HET MSE A 212 8 HET MSE A 213 8 HET MSE A 221 8 HET MSE A 225 8 HET MSE A 248 8 HET MSE A 346 8 HET MSE A 357 8 HET MSE A 371 8 HET MSE A 376 8 HET COA A 501 48 HETNAM MSE SELENOMETHIONINE HETNAM COA COENZYME A FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 2 COA C21 H36 N7 O16 P3 S FORMUL 3 HOH *80(H2 O) HELIX 1 1 ILE A 24 TRP A 36 1 13 HELIX 2 2 ASP A 50 GLN A 55 5 6 HELIX 3 3 TYR A 58 ARG A 63 1 6 HELIX 4 4 LYS A 75 GLU A 87 1 13 HELIX 5 5 PRO A 99 ARG A 104 1 6 HELIX 6 6 THR A 107 ASN A 115 1 9 HELIX 7 7 TYR A 140 SER A 148 1 9 HELIX 8 8 TYR A 150 GLN A 153 5 4 HELIX 9 9 TYR A 166 GLY A 191 1 26 HELIX 10 10 MSE A 200 GLY A 208 1 9 HELIX 11 11 GLY A 208 ASN A 217 1 10 HELIX 12 12 GLY A 252 GLY A 264 1 13 HELIX 13 13 LEU A 265 LEU A 269 5 5 HELIX 14 14 TYR A 288 ALA A 301 1 14 HELIX 15 15 THR A 304 ASN A 316 1 13 HELIX 16 16 THR A 324 LEU A 328 5 5 HELIX 17 17 ASN A 331 ARG A 337 1 7 HELIX 18 18 ASP A 377 ASN A 384 1 8 HELIX 19 19 SER A 388 LYS A 398 1 11 SHEET 1 A 6 HIS A 67 SER A 70 0 SHEET 2 A 6 GLU A 39 GLU A 44 1 N TRP A 42 O HIS A 67 SHEET 3 A 6 ARG A 16 SER A 20 1 N VAL A 17 O GLU A 39 SHEET 4 A 6 ILE A 91 ALA A 95 1 O ILE A 93 N VAL A 18 SHEET 5 A 6 VAL A 119 SER A 124 1 O LEU A 123 N GLU A 94 SHEET 6 A 6 GLU A 194 ALA A 199 1 O ILE A 196 N HIS A 122 SHEET 1 B 2 GLY A 155 ASP A 156 0 SHEET 2 B 2 GLN A 159 PRO A 160 -1 O GLN A 159 N ASP A 156 SHEET 1 C 3 CYS A 236 CYS A 241 0 SHEET 2 C 3 GLY A 244 GLU A 249 -1 O GLY A 244 N CYS A 241 SHEET 3 C 3 ALA A 318 LYS A 321 -1 O ALA A 320 N VAL A 247 SHEET 1 D 2 ILE A 340 GLN A 344 0 SHEET 2 D 2 THR A 350 PRO A 354 -1 O CYS A 351 N TRP A 343 LINK C PRO A 5 N MSE A 6 1555 1555 1.33 LINK C MSE A 6 N PRO A 7 1555 1555 1.35 LINK C GLN A 31 N MSE A 32 1555 1555 1.33 LINK C MSE A 32 N PHE A 33 1555 1555 1.33 LINK C LEU A 85 N MSE A 86 1555 1555 1.33 LINK C MSE A 86 N GLU A 87 1555 1555 1.33 LINK C PRO A 160 N MSE A 161 1555 1555 1.33 LINK C MSE A 161 N PRO A 162 1555 1555 1.34 LINK C ALA A 199 N MSE A 200 1555 1555 1.33 LINK C MSE A 200 N TYR A 201 1555 1555 1.34 LINK C VAL A 203 N MSE A 204 1555 1555 1.33 LINK C MSE A 204 N LEU A 205 1555 1555 1.34 LINK C ARG A 206 N MSE A 207 1555 1555 1.34 LINK C MSE A 207 N GLY A 208 1555 1555 1.34 LINK C PHE A 211 N MSE A 212 1555 1555 1.33 LINK C MSE A 212 N MSE A 213 1555 1555 1.33 LINK C MSE A 213 N ASP A 214 1555 1555 1.34 LINK C GLU A 220 N MSE A 221 1555 1555 1.33 LINK C MSE A 221 N CYS A 222 1555 1555 1.33 LINK C ARG A 224 N MSE A 225 1555 1555 1.34 LINK C MSE A 225 N SER A 226 1555 1555 1.33 LINK C VAL A 247 N MSE A 248 1555 1555 1.33 LINK C MSE A 248 N GLU A 249 1555 1555 1.33 LINK C THR A 345 N MSE A 346 1555 1555 1.33 LINK C MSE A 346 N ASP A 347 1555 1555 1.33 LINK C ILE A 356 N MSE A 357 1555 1555 1.33 LINK C MSE A 357 N PRO A 358 1555 1555 1.34 LINK C GLY A 370 N MSE A 371 1555 1555 1.33 LINK C MSE A 371 N PRO A 372 1555 1555 1.35 LINK C GLY A 375 N MSE A 376 1555 1555 1.33 LINK C MSE A 376 N ASP A 377 1555 1555 1.33 CISPEP 1 PHE A 164 PRO A 165 0 -9.59 CISPEP 2 MSE A 357 PRO A 358 0 -5.38 SITE 1 AC1 20 GLU A 23 ILE A 24 ALA A 25 ASN A 45 SITE 2 AC1 20 LEU A 71 ASN A 72 ILE A 73 PHE A 74 SITE 3 AC1 20 ALA A 95 SER A 96 LYS A 97 ALA A 100 SITE 4 AC1 20 ARG A 103 ARG A 104 PRO A 138 ALA A 139 SITE 5 AC1 20 ASP A 169 ASN A 316 HOH A 535 HOH A 546 CRYST1 87.760 87.760 164.450 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011395 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011395 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006081 0.00000