HEADER TRANSPORT PROTEIN 03-NOV-04 1XX3 TITLE SOLUTION STRUCTURE OF ESCHERICHIA COLI TONB-CTD COMPND MOL_ID: 1; COMPND 2 MOLECULE: TONB PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: TONB, EXBA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST14 KEYWDS TONB-CTD, C-TERMINAL DOMAIN, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.S.PEACOCK,A.M.WELJIE,S.P.HOWARD,F.D.PRICE,H.J.VOGEL REVDAT 3 02-MAR-22 1XX3 1 REMARK SEQADV REVDAT 2 24-FEB-09 1XX3 1 VERSN REVDAT 1 15-FEB-05 1XX3 0 JRNL AUTH R.S.PEACOCK,A.M.WELJIE,S.P.HOWARD,F.D.PRICE,H.J.VOGEL JRNL TITL THE SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF TONB AND JRNL TITL 2 INTERACTION STUDIES WITH TONB BOX PEPTIDES JRNL REF J.MOL.BIOL. V. 345 1185 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15644214 JRNL DOI 10.1016/J.JMB.2004.11.026 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.0, 3.5, CNS 1.1 REMARK 3 AUTHORS : BRUKER (XWINNMR), AXEL BRUNGER ET AL. (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 2711 RESTRAINTS, 2544 OF WHICH ARE NOE-DERIVED, 21 OF WHICH ARE REMARK 3 HYDROGEN BOND RESTRAINTS, AND 146 OF WHICH ARE DIHEDRAL ANGLE REMARK 3 RESTRAINTS REMARK 4 REMARK 4 1XX3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1000030867. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100 MM SODIUM CHLORIDE, 50 MM REMARK 210 SODIUM PHOSPHATE REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM TONB-CTD U-15N,13C; 50 MM REMARK 210 SODIUM PHOSPHATE BUFFER; 100 MM REMARK 210 NACL; 600 UM SODIUM AZIDE, 90% REMARK 210 H2O 10% D2O; 1.0 MM TONB-CTD U- REMARK 210 15N; 50 MM SODIUM PHOSPHATE REMARK 210 BUFFER; 100 MM NACL ; 600 UM REMARK 210 SODIUM AZIDE; PH 7.0, 90% H2O 10% REMARK 210 D2O; 1.0 MM TONB-CTD U-15N; 50 REMARK 210 MM SODIUM PHOSPHATE BUFFER; 100 REMARK 210 MM NACL; 600 UM SODIUM AZIDE; PH REMARK 210 7.0, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.3 REV 2004.194.17.02, REMARK 210 NMRVIEW 5.0.4, ARIA 2.0 REMARK 210 METHOD USED : THIS STRUCTURE WAS REFINED USING REMARK 210 STANDARD ARIA2.0 PROTOCOLS REMARK 210 (DISTANCE GEOMETRY,SIMULATED REMARK 210 ANNEALING, TORSION ANGLE REMARK 210 DYNAMICS, WATER REFINEMENT) REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD TRIPLE REMARK 210 -RESONANCE NMR SPECTROSCOPY TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 96 REMARK 465 HIS A 97 REMARK 465 HIS A 98 REMARK 465 HIS A 99 REMARK 465 HIS A 100 REMARK 465 HIS A 101 REMARK 465 HIS A 102 REMARK 465 VAL A 103 REMARK 465 LYS A 104 REMARK 465 LYS A 105 REMARK 465 VAL A 106 REMARK 465 GLN A 107 REMARK 465 GLU A 108 REMARK 465 GLN A 109 REMARK 465 PRO A 110 REMARK 465 LYS A 111 REMARK 465 ARG A 112 REMARK 465 ASP A 113 REMARK 465 VAL A 114 REMARK 465 LYS A 115 REMARK 465 PRO A 116 REMARK 465 VAL A 117 REMARK 465 GLU A 118 REMARK 465 SER A 119 REMARK 465 ARG A 120 REMARK 465 PRO A 121 REMARK 465 ALA A 122 REMARK 465 SER A 123 REMARK 465 PRO A 124 REMARK 465 PHE A 125 REMARK 465 GLU A 126 REMARK 465 ASN A 127 REMARK 465 THR A 128 REMARK 465 ALA A 129 REMARK 465 PRO A 130 REMARK 465 ALA A 131 REMARK 465 ARG A 132 REMARK 465 LEU A 133 REMARK 465 THR A 134 REMARK 465 SER A 135 REMARK 465 SER A 136 REMARK 465 THR A 137 REMARK 465 ALA A 138 REMARK 465 THR A 139 REMARK 465 ALA A 140 REMARK 465 ALA A 141 REMARK 465 THR A 142 REMARK 465 SER A 143 REMARK 465 LYS A 144 REMARK 465 PRO A 145 REMARK 465 VAL A 146 REMARK 465 THR A 147 REMARK 465 SER A 148 REMARK 465 VAL A 149 REMARK 465 ALA A 150 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 197 -74.23 -61.45 REMARK 500 1 ALA A 199 -83.34 -44.01 REMARK 500 2 PRO A 198 -151.37 -92.08 REMARK 500 2 ALA A 199 -94.81 -120.04 REMARK 500 3 SER A 157 -81.16 -116.58 REMARK 500 3 PRO A 184 2.25 -65.07 REMARK 500 3 ALA A 199 -92.93 -97.04 REMARK 500 4 ARG A 158 52.29 -103.27 REMARK 500 4 ALA A 199 -97.16 -81.55 REMARK 500 5 SER A 157 95.28 -160.04 REMARK 500 5 PRO A 184 2.03 -65.49 REMARK 500 5 ALA A 199 -89.49 -72.21 REMARK 500 6 SER A 157 92.70 -161.71 REMARK 500 6 PRO A 184 3.43 -68.78 REMARK 500 6 PRO A 198 -155.05 -82.98 REMARK 500 6 ALA A 199 -89.75 -121.06 REMARK 500 7 PRO A 184 4.84 -65.65 REMARK 500 7 PRO A 198 -153.88 -91.05 REMARK 500 7 ALA A 199 -88.80 -107.27 REMARK 500 8 ARG A 158 57.24 -114.17 REMARK 500 8 PRO A 198 -143.76 -92.89 REMARK 500 8 ALA A 199 -96.29 -122.67 REMARK 500 9 PRO A 153 100.83 -55.80 REMARK 500 9 PRO A 184 3.07 -65.61 REMARK 500 9 ALA A 199 -87.59 -93.71 REMARK 500 10 PRO A 153 101.18 -52.93 REMARK 500 10 SER A 157 103.46 -163.89 REMARK 500 10 ALA A 199 -83.77 -95.12 REMARK 500 11 ARG A 158 59.82 -93.96 REMARK 500 11 PRO A 184 2.04 -65.28 REMARK 500 11 PRO A 198 -154.50 -84.44 REMARK 500 11 ALA A 199 -82.46 -132.34 REMARK 500 12 PRO A 198 -147.66 -85.11 REMARK 500 12 ALA A 199 -96.14 -122.47 REMARK 500 13 PRO A 184 3.24 -65.53 REMARK 500 13 ALA A 199 -93.09 -91.30 REMARK 500 14 ARG A 158 52.94 -111.42 REMARK 500 14 PRO A 198 -155.64 -80.31 REMARK 500 14 ALA A 199 -84.05 -119.98 REMARK 500 15 ARG A 158 58.58 -118.16 REMARK 500 15 PRO A 198 -159.14 -89.51 REMARK 500 15 ALA A 199 -104.48 -105.56 REMARK 500 16 SER A 195 146.78 -170.48 REMARK 500 16 ALA A 199 -110.61 -99.03 REMARK 500 17 ARG A 158 71.48 -109.02 REMARK 500 17 PRO A 198 -155.00 -89.94 REMARK 500 17 ALA A 199 -92.11 -102.83 REMARK 500 18 PRO A 184 8.36 -67.32 REMARK 500 18 LYS A 197 -174.11 -58.07 REMARK 500 18 PRO A 198 -75.73 -24.00 REMARK 500 REMARK 500 THIS ENTRY HAS 58 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6375 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFTS OF TONB-CTD DBREF 1XX3 A 103 239 UNP P02929 TONB_ECOLI 103 239 SEQADV 1XX3 MET A 96 UNP P02929 CLONING ARTIFACT SEQADV 1XX3 HIS A 97 UNP P02929 CLONING ARTIFACT SEQADV 1XX3 HIS A 98 UNP P02929 CLONING ARTIFACT SEQADV 1XX3 HIS A 99 UNP P02929 CLONING ARTIFACT SEQADV 1XX3 HIS A 100 UNP P02929 CLONING ARTIFACT SEQADV 1XX3 HIS A 101 UNP P02929 CLONING ARTIFACT SEQADV 1XX3 HIS A 102 UNP P02929 CLONING ARTIFACT SEQRES 1 A 144 MET HIS HIS HIS HIS HIS HIS VAL LYS LYS VAL GLN GLU SEQRES 2 A 144 GLN PRO LYS ARG ASP VAL LYS PRO VAL GLU SER ARG PRO SEQRES 3 A 144 ALA SER PRO PHE GLU ASN THR ALA PRO ALA ARG LEU THR SEQRES 4 A 144 SER SER THR ALA THR ALA ALA THR SER LYS PRO VAL THR SEQRES 5 A 144 SER VAL ALA SER GLY PRO ARG ALA LEU SER ARG ASN GLN SEQRES 6 A 144 PRO GLN TYR PRO ALA ARG ALA GLN ALA LEU ARG ILE GLU SEQRES 7 A 144 GLY GLN VAL LYS VAL LYS PHE ASP VAL THR PRO ASP GLY SEQRES 8 A 144 ARG VAL ASP ASN VAL GLN ILE LEU SER ALA LYS PRO ALA SEQRES 9 A 144 ASN MET PHE GLU ARG GLU VAL LYS ASN ALA MET ARG ARG SEQRES 10 A 144 TRP ARG TYR GLU PRO GLY LYS PRO GLY SER GLY ILE VAL SEQRES 11 A 144 VAL ASN ILE LEU PHE LYS ILE ASN GLY THR THR GLU ILE SEQRES 12 A 144 GLN HELIX 1 1 PRO A 164 ALA A 169 1 6 HELIX 2 2 PRO A 198 ARG A 211 1 14 SHEET 1 A 2 ALA A 155 SER A 157 0 SHEET 2 A 2 ARG A 214 TYR A 215 -1 O ARG A 214 N LEU A 156 SHEET 1 B 4 VAL A 188 SER A 195 0 SHEET 2 B 4 GLY A 174 VAL A 182 -1 N LYS A 177 O SER A 195 SHEET 3 B 4 GLY A 221 LYS A 231 -1 O PHE A 230 N GLY A 174 SHEET 4 B 4 THR A 235 GLN A 239 -1 O GLN A 239 N ASN A 227 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1