HEADER UNKNOWN FUNCTION 11-NOV-04 1XYX TITLE MOUSE PRION PROTEIN FRAGMENT 121-231 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR PRION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 SYNONYM: PRP, PRP27-30, PRP33-35C; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PRNP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS PRION, MPRP, TSE, PRION PROTEIN, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.D.GOSSERT,S.BONJOUR,D.A.LYSEK,F.FIORITO,K.WUTHRICH REVDAT 5 02-MAR-22 1XYX 1 REMARK REVDAT 4 24-FEB-09 1XYX 1 VERSN REVDAT 3 25-JAN-05 1XYX 1 JRNL REVDAT 2 11-JAN-05 1XYX 1 AUTHOR REVDAT 1 28-NOV-04 1XYX 0 JRNL AUTH A.D.GOSSERT,S.BONJOUR,D.A.LYSEK,F.FIORITO,K.WUTHRICH JRNL TITL PRION PROTEIN NMR STRUCTURES OF ELK AND OF MOUSE/ELK HYBRIDS JRNL REF PROC.NATL.ACAD.SCI.USA V. 102 646 2005 JRNL REFN ISSN 0027-8424 JRNL PMID 15647363 JRNL DOI 10.1073/PNAS.0409008102 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.RIEK,G.WIDER,M.BILLETER,S.HORNEMANN,R.GLOCKSHUBER, REMARK 1 AUTH 2 K.WUTHRICH REMARK 1 TITL PRION PROTEIN NMR STRUCTURE AND FAMILIAL HUMAN SPONGIFORM REMARK 1 TITL 2 ENCEPHALOPATHIES REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 95 11667 1998 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 9751723 REMARK 1 DOI 10.1073/PNAS.95.20.11667 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0, CANDID 1.0 REMARK 3 AUTHORS : GUENTERT (CYANA), HERRMANN (CANDID) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS ALSO REFINED WITH REMARK 3 ATNOS VERSION 1.0 (AUTHOR: HERRMANN) REMARK 4 REMARK 4 1XYX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1000030918. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM MPRP(121-231) U-15N,13C; REMARK 210 10MM ACETATE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 3D REMARK 210 HETERONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 149 OD1 ASP A 202 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 ARG A 230 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 5 VAL A 121 CA - CB - CG1 ANGL. DEV. = 9.2 DEGREES REMARK 500 5 ARG A 156 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 6 ARG A 148 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 10 ARG A 148 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 10 ARG A 230 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 17 TYR A 157 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 18 ARG A 208 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 19 ARG A 148 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 20 ARG A 148 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 129 99.80 -56.48 REMARK 500 1 ALA A 133 172.74 -56.73 REMARK 500 1 ARG A 136 106.43 -52.38 REMARK 500 1 SER A 170 -100.71 48.10 REMARK 500 1 VAL A 189 -70.28 -133.04 REMARK 500 1 PHE A 198 -156.67 -139.22 REMARK 500 1 ARG A 229 20.55 -149.69 REMARK 500 2 SER A 170 -61.21 -149.34 REMARK 500 2 VAL A 189 -69.30 -134.34 REMARK 500 2 SER A 231 52.84 -103.99 REMARK 500 3 MET A 134 -167.17 -103.64 REMARK 500 3 GLN A 168 -58.27 -122.42 REMARK 500 3 TYR A 169 161.00 56.41 REMARK 500 3 SER A 170 -42.91 -156.80 REMARK 500 3 ASN A 171 96.08 -173.42 REMARK 500 3 VAL A 189 -65.74 -134.53 REMARK 500 3 ARG A 229 14.36 -140.59 REMARK 500 3 ARG A 230 56.52 -98.65 REMARK 500 4 VAL A 122 43.69 34.64 REMARK 500 4 TYR A 163 -165.28 -166.54 REMARK 500 4 TYR A 169 -169.89 53.37 REMARK 500 4 SER A 170 -42.49 -158.08 REMARK 500 4 VAL A 189 -66.65 -135.40 REMARK 500 4 ARG A 229 14.58 -145.39 REMARK 500 4 ARG A 230 52.66 -94.55 REMARK 500 5 VAL A 122 75.69 40.00 REMARK 500 5 ARG A 136 125.62 -24.99 REMARK 500 5 TYR A 163 -157.34 -143.38 REMARK 500 5 GLN A 168 91.02 63.07 REMARK 500 5 TYR A 169 -158.28 -125.50 REMARK 500 5 SER A 170 -149.25 -133.87 REMARK 500 5 VAL A 189 -75.70 -131.89 REMARK 500 5 GLU A 196 98.64 -56.60 REMARK 500 5 PHE A 198 -158.75 -138.18 REMARK 500 5 SER A 231 45.56 -77.12 REMARK 500 6 MET A 129 95.47 -60.47 REMARK 500 6 PRO A 137 -172.01 -63.73 REMARK 500 6 TYR A 163 -158.40 -145.64 REMARK 500 6 ASP A 167 107.50 -55.75 REMARK 500 6 SER A 170 -73.28 69.48 REMARK 500 6 VAL A 189 -64.44 -137.31 REMARK 500 6 ARG A 229 28.83 -168.80 REMARK 500 6 ARG A 230 76.86 -110.73 REMARK 500 7 MET A 134 -155.33 -89.70 REMARK 500 7 ARG A 136 111.11 -38.15 REMARK 500 7 TYR A 163 -161.17 -174.37 REMARK 500 7 ASP A 167 85.97 24.66 REMARK 500 7 GLN A 168 80.45 52.04 REMARK 500 7 SER A 170 -61.15 -151.34 REMARK 500 7 VAL A 189 -64.85 -136.12 REMARK 500 REMARK 500 THIS ENTRY HAS 146 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 139 HIS A 140 2 146.79 REMARK 500 SER A 231 SER A 232 7 -149.32 REMARK 500 SER A 231 SER A 232 10 148.60 REMARK 500 SER A 231 SER A 232 11 -120.97 REMARK 500 SER A 231 SER A 232 14 148.71 REMARK 500 GLN A 168 TYR A 169 18 148.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 149 0.09 SIDE CHAIN REMARK 500 1 ARG A 164 0.14 SIDE CHAIN REMARK 500 2 TYR A 150 0.12 SIDE CHAIN REMARK 500 5 TYR A 155 0.10 SIDE CHAIN REMARK 500 5 ARG A 229 0.11 SIDE CHAIN REMARK 500 6 TYR A 150 0.07 SIDE CHAIN REMARK 500 6 TYR A 157 0.08 SIDE CHAIN REMARK 500 6 ARG A 208 0.09 SIDE CHAIN REMARK 500 6 ARG A 230 0.11 SIDE CHAIN REMARK 500 7 TYR A 225 0.09 SIDE CHAIN REMARK 500 8 ARG A 136 0.10 SIDE CHAIN REMARK 500 8 TYR A 150 0.07 SIDE CHAIN REMARK 500 8 ARG A 156 0.09 SIDE CHAIN REMARK 500 8 ARG A 164 0.09 SIDE CHAIN REMARK 500 8 TYR A 218 0.08 SIDE CHAIN REMARK 500 9 ARG A 136 0.08 SIDE CHAIN REMARK 500 9 TYR A 149 0.07 SIDE CHAIN REMARK 500 9 TYR A 162 0.07 SIDE CHAIN REMARK 500 10 ARG A 148 0.10 SIDE CHAIN REMARK 500 10 ARG A 151 0.12 SIDE CHAIN REMARK 500 10 ARG A 208 0.09 SIDE CHAIN REMARK 500 11 ARG A 156 0.08 SIDE CHAIN REMARK 500 11 TYR A 218 0.07 SIDE CHAIN REMARK 500 12 ARG A 156 0.10 SIDE CHAIN REMARK 500 13 ARG A 148 0.10 SIDE CHAIN REMARK 500 13 TYR A 150 0.10 SIDE CHAIN REMARK 500 13 ARG A 156 0.10 SIDE CHAIN REMARK 500 13 TYR A 163 0.07 SIDE CHAIN REMARK 500 13 TYR A 218 0.07 SIDE CHAIN REMARK 500 14 ARG A 151 0.09 SIDE CHAIN REMARK 500 15 ARG A 151 0.09 SIDE CHAIN REMARK 500 16 ARG A 136 0.10 SIDE CHAIN REMARK 500 16 TYR A 169 0.10 SIDE CHAIN REMARK 500 16 PHE A 175 0.08 SIDE CHAIN REMARK 500 17 ARG A 136 0.08 SIDE CHAIN REMARK 500 17 ARG A 151 0.12 SIDE CHAIN REMARK 500 18 ARG A 151 0.12 SIDE CHAIN REMARK 500 19 TYR A 150 0.07 SIDE CHAIN REMARK 500 19 TYR A 163 0.08 SIDE CHAIN REMARK 500 19 TYR A 169 0.07 SIDE CHAIN REMARK 500 20 TYR A 169 0.12 SIDE CHAIN REMARK 500 20 TYR A 225 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AG2 RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH LESS PRECISSION DBREF 1XYX A 121 232 UNP P04925 PRIO_MOUSE 120 231 SEQRES 1 A 112 VAL VAL GLY GLY LEU GLY GLY TYR MET LEU GLY SER ALA SEQRES 2 A 112 MET SER ARG PRO MET ILE HIS PHE GLY ASN ASP TRP GLU SEQRES 3 A 112 ASP ARG TYR TYR ARG GLU ASN MET TYR ARG TYR PRO ASN SEQRES 4 A 112 GLN VAL TYR TYR ARG PRO VAL ASP GLN TYR SER ASN GLN SEQRES 5 A 112 ASN ASN PHE VAL HIS ASP CYS VAL ASN ILE THR ILE LYS SEQRES 6 A 112 GLN HIS THR VAL THR THR THR THR LYS GLY GLU ASN PHE SEQRES 7 A 112 THR GLU THR ASP VAL LYS MET MET GLU ARG VAL VAL GLU SEQRES 8 A 112 GLN MET CYS VAL THR GLN TYR GLN LYS GLU SER GLN ALA SEQRES 9 A 112 TYR TYR ASP GLY ARG ARG SER SER HELIX 1 1 ASP A 144 MET A 154 1 11 HELIX 2 2 TYR A 155 TYR A 157 5 3 HELIX 3 3 PRO A 165 TYR A 169 5 5 HELIX 4 4 ASN A 171 THR A 188 1 18 HELIX 5 5 THR A 199 GLY A 228 1 30 SHEET 1 A 2 MET A 129 LEU A 130 0 SHEET 2 A 2 TYR A 162 TYR A 163 -1 O TYR A 163 N MET A 129 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1