HEADER HYDROLASE 12-NOV-04 1XZW TITLE SWEET POTATO PURPLE ACID PHOSPHATASE/PHOSPHATE COMPLEX CAVEAT 1XZW NAG C 1 HAS WRONG CHIRALITY AT ATOM C1 NAG C 2 HAS WRONG CAVEAT 2 1XZW CHIRALITY AT ATOM C1 MAN C 3 HAS WRONG CHIRALITY AT ATOM C1 CAVEAT 3 1XZW FUC E 2 HAS WRONG CHIRALITY AT ATOM C1 FUC F 2 HAS WRONG CAVEAT 4 1XZW CHIRALITY AT ATOM C1 NAG H 1 HAS WRONG CHIRALITY AT ATOM C1 CAVEAT 5 1XZW NAG H 2 HAS WRONG CHIRALITY AT ATOM C1 MAN H 3 HAS WRONG CAVEAT 6 1XZW CHIRALITY AT ATOM C1 FUC H 4 HAS WRONG CHIRALITY AT ATOM C1 CAVEAT 7 1XZW FUC I 2 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PURPLE ACID PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-426; COMPND 5 EC: 3.1.3.2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: IPOMOEA BATATAS; SOURCE 3 ORGANISM_COMMON: SWEET POTATO; SOURCE 4 ORGANISM_TAXID: 4120 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.SCHENK,L.E.CARRINGTON,L.R.GAHAN,S.E.HAMILTON,J.DE JERSEY,L.W.GUDDAT REVDAT 7 25-OCT-23 1XZW 1 HETSYN REVDAT 6 29-JUL-20 1XZW 1 CAVEAT COMPND REMARK HETNAM REVDAT 6 2 1 LINK SITE ATOM REVDAT 5 11-OCT-17 1XZW 1 REMARK REVDAT 4 13-JUL-11 1XZW 1 VERSN REVDAT 3 24-FEB-09 1XZW 1 VERSN REVDAT 2 25-JAN-05 1XZW 1 JRNL REVDAT 1 14-DEC-04 1XZW 0 JRNL AUTH G.SCHENK,L.R.GAHAN,L.E.CARRINGTON,N.MITIC,M.VALIZADEH, JRNL AUTH 2 S.E.HAMILTON,J.DE JERSEY,L.W.GUDDAT JRNL TITL PHOSPHATE FORMS AN UNUSUAL TRIPODAL COMPLEX WITH THE FE-MN JRNL TITL 2 CENTER OF SWEET POTATO PURPLE ACID PHOSPHATASE JRNL REF PROC.NATL.ACAD.SCI.USA V. 102 273 2005 JRNL REFN ISSN 0027-8424 JRNL PMID 15625111 JRNL DOI 10.1073/PNAS.0407239102 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.843 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 95.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.1 REMARK 3 NUMBER OF REFLECTIONS : 36310 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3634 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 55.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 289 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.046 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6899 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 288 REMARK 3 SOLVENT ATOMS : 181 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1XZW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1000030939. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADX REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37188 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 58.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : 0.31000 REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: PDB ENTRY 4KBP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CITRIC ACID, PEG 6000, ISOPROPANOL, REMARK 280 PHOSPHATE, GLYCEROL, PH 4.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 194.63333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 97.31667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 145.97500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 48.65833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 243.29167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 194.63333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 97.31667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 48.65833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 145.97500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 243.29167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER WHICH IS CONTAINED REMARK 300 WITHIN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 425 REMARK 465 SER A 426 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 1 CG CD1 CD2 REMARK 470 ALA A 51 CB REMARK 470 ASN A 62 CG OD1 ND2 REMARK 470 SER A 63 OG REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 67 CG CD CE NZ REMARK 470 LEU B 501 CG CD1 CD2 REMARK 470 ALA B 551 CB REMARK 470 ASN B 562 CG OD1 ND2 REMARK 470 SER B 563 OG REMARK 470 LYS B 564 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 49 61.63 -105.29 REMARK 500 ALA A 51 123.83 -36.40 REMARK 500 ASN A 62 50.24 -96.15 REMARK 500 SER A 63 72.95 -174.12 REMARK 500 LYS A 64 -66.46 -22.58 REMARK 500 SER A 65 120.81 -38.67 REMARK 500 TYR A 79 -135.42 56.13 REMARK 500 GLN A 137 52.42 -144.56 REMARK 500 LYS A 154 75.12 50.91 REMARK 500 ASP A 163 82.18 67.48 REMARK 500 LEU A 164 -75.44 -77.73 REMARK 500 ASP A 174 99.20 -21.46 REMARK 500 PRO A 225 49.21 -86.23 REMARK 500 ALA A 242 -122.26 57.75 REMARK 500 TYR A 258 -10.80 83.51 REMARK 500 HIS A 295 18.73 53.79 REMARK 500 HIS A 322 -49.00 68.07 REMARK 500 SER A 325 -174.54 -179.00 REMARK 500 ASN A 334 59.88 -143.40 REMARK 500 ASN A 338 22.73 -144.79 REMARK 500 ILE A 339 -69.53 79.38 REMARK 500 ALA A 342 19.59 57.23 REMARK 500 ASP B 549 61.44 -105.71 REMARK 500 ALA B 551 124.72 -36.46 REMARK 500 TYR B 579 -135.71 55.48 REMARK 500 ASN B 580 30.30 -85.74 REMARK 500 GLN B 637 52.93 -144.49 REMARK 500 LYS B 654 75.40 51.45 REMARK 500 ASP B 663 82.83 66.65 REMARK 500 LEU B 664 -75.22 -77.41 REMARK 500 ASP B 674 98.91 -21.90 REMARK 500 PRO B 725 49.50 -86.24 REMARK 500 ALA B 742 -122.08 57.98 REMARK 500 TYR B 758 -10.73 83.71 REMARK 500 HIS B 795 18.63 53.53 REMARK 500 HIS B 822 -49.51 67.99 REMARK 500 SER B 825 -174.69 -179.27 REMARK 500 ASN B 834 59.29 -142.45 REMARK 500 ASN B 838 22.62 -145.05 REMARK 500 ILE B 839 -69.26 79.83 REMARK 500 ALA B 842 19.37 57.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 429 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 134 OD2 REMARK 620 2 ASP A 163 OD2 79.5 REMARK 620 3 TYR A 166 OH 91.8 95.1 REMARK 620 4 HIS A 324 NE2 102.6 167.9 96.8 REMARK 620 5 PO4 A 431 O1 160.3 104.4 106.9 69.7 REMARK 620 6 PO4 A 431 O3 99.6 93.2 167.0 74.7 61.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 430 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 163 OD2 REMARK 620 2 ASN A 200 OD1 104.8 REMARK 620 3 HIS A 285 NE2 83.2 89.5 REMARK 620 4 HIS A 322 ND1 160.7 91.5 86.6 REMARK 620 5 PO4 A 431 O3 85.4 140.4 129.9 88.7 REMARK 620 6 PO4 A 431 O2 97.2 85.8 175.3 94.3 54.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 929 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 634 OD2 REMARK 620 2 ASP B 663 OD2 80.4 REMARK 620 3 TYR B 666 OH 92.0 93.6 REMARK 620 4 HIS B 824 NE2 103.6 172.0 93.2 REMARK 620 5 PO4 B 931 O1 166.5 99.0 101.5 75.4 REMARK 620 6 PO4 B 931 P 135.0 92.5 133.0 79.8 31.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 930 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 663 OD2 REMARK 620 2 ASN B 700 OD1 103.1 REMARK 620 3 HIS B 785 NE2 81.9 92.5 REMARK 620 4 HIS B 822 ND1 160.7 95.4 91.7 REMARK 620 5 PO4 B 931 O2 87.9 86.3 169.2 99.1 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UTE RELATED DB: PDB REMARK 900 MAMMALIAN PURPLE ACID PHOSPHATASE REMARK 900 RELATED ID: 4KBP RELATED DB: PDB REMARK 900 RED KIDNEY BEAN PURPLE ACID PHOSPHATASE DBREF 1XZW A 1 426 GB 6635441 AAF19821 39 464 DBREF 1XZW B 501 926 GB 6635441 AAF19821 39 464 SEQADV 1XZW PHE A 57 GB 6635441 VAL 95 SEE REMARK 999 SEQADV 1XZW PHE B 557 GB 6635441 VAL 95 SEE REMARK 999 SEQRES 1 A 426 LEU PRO ASN ALA GLU ASP VAL ASP MET PRO TRP ASP SER SEQRES 2 A 426 ASP VAL PHE ALA VAL PRO SER GLY TYR ASN ALA PRO GLN SEQRES 3 A 426 GLN VAL HIS ILE THR GLN GLY ASP TYR GLU GLY ARG GLY SEQRES 4 A 426 VAL ILE ILE SER TRP THR THR PRO TYR ASP LYS ALA GLY SEQRES 5 A 426 ALA ASN LYS VAL PHE TYR TRP SER GLU ASN SER LYS SER SEQRES 6 A 426 GLN LYS ARG ALA MET GLY THR VAL VAL THR TYR LYS TYR SEQRES 7 A 426 TYR ASN TYR THR SER ALA PHE ILE HIS HIS CYS THR ILE SEQRES 8 A 426 LYS ASP LEU GLU TYR ASP THR LYS TYR TYR TYR ARG LEU SEQRES 9 A 426 GLY PHE GLY ASP ALA LYS ARG GLN PHE TRP PHE VAL THR SEQRES 10 A 426 PRO PRO LYS PRO GLY PRO ASP VAL PRO TYR VAL PHE GLY SEQRES 11 A 426 LEU ILE GLY ASP ILE GLY GLN THR HIS ASP SER ASN THR SEQRES 12 A 426 THR LEU THR HIS TYR GLU GLN ASN SER ALA LYS GLY GLN SEQRES 13 A 426 ALA VAL LEU PHE MET GLY ASP LEU SER TYR SER ASN ARG SEQRES 14 A 426 TRP PRO ASN HIS ASP ASN ASN ARG TRP ASP THR TRP GLY SEQRES 15 A 426 ARG PHE SER GLU ARG SER VAL ALA TYR GLN PRO TRP ILE SEQRES 16 A 426 TRP THR ALA GLY ASN HIS GLU ILE ASP TYR ALA PRO ASP SEQRES 17 A 426 ILE GLY GLU TYR GLN PRO PHE VAL PRO PHE THR ASN ARG SEQRES 18 A 426 TYR PRO THR PRO HIS GLU ALA SER GLY SER GLY ASP PRO SEQRES 19 A 426 LEU TRP TYR ALA ILE LYS ARG ALA SER ALA HIS ILE ILE SEQRES 20 A 426 VAL LEU SER SER TYR SER GLY PHE VAL LYS TYR SER PRO SEQRES 21 A 426 GLN TYR LYS TRP PHE THR SER GLU LEU GLU LYS VAL ASN SEQRES 22 A 426 ARG SER GLU THR PRO TRP LEU ILE VAL LEU VAL HIS ALA SEQRES 23 A 426 PRO LEU TYR ASN SER TYR GLU ALA HIS TYR MET GLU GLY SEQRES 24 A 426 GLU ALA MET ARG ALA ILE PHE GLU PRO TYR PHE VAL TYR SEQRES 25 A 426 TYR LYS VAL ASP ILE VAL PHE SER GLY HIS VAL HIS SER SEQRES 26 A 426 TYR GLU ARG SER GLU ARG VAL SER ASN VAL ALA TYR ASN SEQRES 27 A 426 ILE VAL ASN ALA LYS CYS THR PRO VAL SER ASP GLU SER SEQRES 28 A 426 ALA PRO VAL TYR ILE THR ILE GLY ASP GLY GLY ASN SER SEQRES 29 A 426 GLU GLY LEU ALA SER GLU MET THR GLN PRO GLN PRO SER SEQRES 30 A 426 TYR SER ALA PHE ARG GLU ALA SER PHE GLY HIS GLY ILE SEQRES 31 A 426 PHE ASP ILE LYS ASN ARG THR HIS ALA HIS PHE SER TRP SEQRES 32 A 426 HIS ARG ASN GLN ASP GLY ALA SER VAL GLU ALA ASP SER SEQRES 33 A 426 LEU TRP LEU LEU ASN ARG TYR TRP ALA SER SEQRES 1 B 426 LEU PRO ASN ALA GLU ASP VAL ASP MET PRO TRP ASP SER SEQRES 2 B 426 ASP VAL PHE ALA VAL PRO SER GLY TYR ASN ALA PRO GLN SEQRES 3 B 426 GLN VAL HIS ILE THR GLN GLY ASP TYR GLU GLY ARG GLY SEQRES 4 B 426 VAL ILE ILE SER TRP THR THR PRO TYR ASP LYS ALA GLY SEQRES 5 B 426 ALA ASN LYS VAL PHE TYR TRP SER GLU ASN SER LYS SER SEQRES 6 B 426 GLN LYS ARG ALA MET GLY THR VAL VAL THR TYR LYS TYR SEQRES 7 B 426 TYR ASN TYR THR SER ALA PHE ILE HIS HIS CYS THR ILE SEQRES 8 B 426 LYS ASP LEU GLU TYR ASP THR LYS TYR TYR TYR ARG LEU SEQRES 9 B 426 GLY PHE GLY ASP ALA LYS ARG GLN PHE TRP PHE VAL THR SEQRES 10 B 426 PRO PRO LYS PRO GLY PRO ASP VAL PRO TYR VAL PHE GLY SEQRES 11 B 426 LEU ILE GLY ASP ILE GLY GLN THR HIS ASP SER ASN THR SEQRES 12 B 426 THR LEU THR HIS TYR GLU GLN ASN SER ALA LYS GLY GLN SEQRES 13 B 426 ALA VAL LEU PHE MET GLY ASP LEU SER TYR SER ASN ARG SEQRES 14 B 426 TRP PRO ASN HIS ASP ASN ASN ARG TRP ASP THR TRP GLY SEQRES 15 B 426 ARG PHE SER GLU ARG SER VAL ALA TYR GLN PRO TRP ILE SEQRES 16 B 426 TRP THR ALA GLY ASN HIS GLU ILE ASP TYR ALA PRO ASP SEQRES 17 B 426 ILE GLY GLU TYR GLN PRO PHE VAL PRO PHE THR ASN ARG SEQRES 18 B 426 TYR PRO THR PRO HIS GLU ALA SER GLY SER GLY ASP PRO SEQRES 19 B 426 LEU TRP TYR ALA ILE LYS ARG ALA SER ALA HIS ILE ILE SEQRES 20 B 426 VAL LEU SER SER TYR SER GLY PHE VAL LYS TYR SER PRO SEQRES 21 B 426 GLN TYR LYS TRP PHE THR SER GLU LEU GLU LYS VAL ASN SEQRES 22 B 426 ARG SER GLU THR PRO TRP LEU ILE VAL LEU VAL HIS ALA SEQRES 23 B 426 PRO LEU TYR ASN SER TYR GLU ALA HIS TYR MET GLU GLY SEQRES 24 B 426 GLU ALA MET ARG ALA ILE PHE GLU PRO TYR PHE VAL TYR SEQRES 25 B 426 TYR LYS VAL ASP ILE VAL PHE SER GLY HIS VAL HIS SER SEQRES 26 B 426 TYR GLU ARG SER GLU ARG VAL SER ASN VAL ALA TYR ASN SEQRES 27 B 426 ILE VAL ASN ALA LYS CYS THR PRO VAL SER ASP GLU SER SEQRES 28 B 426 ALA PRO VAL TYR ILE THR ILE GLY ASP GLY GLY ASN SER SEQRES 29 B 426 GLU GLY LEU ALA SER GLU MET THR GLN PRO GLN PRO SER SEQRES 30 B 426 TYR SER ALA PHE ARG GLU ALA SER PHE GLY HIS GLY ILE SEQRES 31 B 426 PHE ASP ILE LYS ASN ARG THR HIS ALA HIS PHE SER TRP SEQRES 32 B 426 HIS ARG ASN GLN ASP GLY ALA SER VAL GLU ALA ASP SER SEQRES 33 B 426 LEU TRP LEU LEU ASN ARG TYR TRP ALA SER MODRES 1XZW ASN A 80 ASN GLYCOSYLATION SITE MODRES 1XZW ASN A 142 ASN GLYCOSYLATION SITE MODRES 1XZW ASN A 273 ASN GLYCOSYLATION SITE MODRES 1XZW ASN A 395 ASN GLYCOSYLATION SITE MODRES 1XZW ASN B 580 ASN GLYCOSYLATION SITE MODRES 1XZW ASN B 642 ASN GLYCOSYLATION SITE MODRES 1XZW ASN B 773 ASN GLYCOSYLATION SITE MODRES 1XZW ASN B 895 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET MAN C 3 11 HET FUC C 4 10 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET FUC E 2 10 HET NAG F 1 14 HET FUC F 2 10 HET NAG G 1 14 HET FUC G 2 10 HET NAG G 3 14 HET NAG H 1 14 HET NAG H 2 14 HET MAN H 3 11 HET FUC H 4 10 HET NAG I 1 14 HET FUC I 2 10 HET NAG I 3 14 HET FE A 429 1 HET MN A 430 1 HET PO4 A 431 5 HET PO4 A 451 5 HET NAG B 934 14 HET FE B 929 1 HET MN B 930 1 HET PO4 B 931 5 HET PO4 B 450 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM FE FE (III) ION HETNAM MN MANGANESE (II) ION HETNAM PO4 PHOSPHATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NAG 13(C8 H15 N O6) FORMUL 3 MAN 2(C6 H12 O6) FORMUL 3 FUC 6(C6 H12 O5) FORMUL 10 FE 2(FE 3+) FORMUL 11 MN 2(MN 2+) FORMUL 12 PO4 4(O4 P 3-) FORMUL 19 HOH *181(H2 O) HELIX 1 1 ASN A 3 ASP A 8 1 6 HELIX 2 2 SER A 13 ALA A 17 5 5 HELIX 3 3 PHE A 106 LYS A 110 5 5 HELIX 4 4 THR A 138 ASN A 151 1 14 HELIX 5 5 TYR A 166 ASP A 174 5 9 HELIX 6 6 ASN A 175 ALA A 190 1 16 HELIX 7 7 GLY A 199 ILE A 203 5 5 HELIX 8 8 ALA A 206 GLY A 210 5 5 HELIX 9 9 PHE A 215 TYR A 222 1 8 HELIX 10 10 HIS A 226 GLY A 230 5 5 HELIX 11 11 SER A 259 VAL A 272 1 14 HELIX 12 12 GLY A 299 TYR A 313 1 15 HELIX 13 13 ASN B 503 ASP B 508 1 6 HELIX 14 14 SER B 513 ALA B 517 5 5 HELIX 15 15 PHE B 606 LYS B 610 5 5 HELIX 16 16 THR B 638 ASN B 651 1 14 HELIX 17 17 TYR B 666 ASP B 674 5 9 HELIX 18 18 ASN B 675 ALA B 690 1 16 HELIX 19 19 GLY B 699 ILE B 703 5 5 HELIX 20 20 ALA B 706 GLY B 710 5 5 HELIX 21 21 PHE B 715 TYR B 722 1 8 HELIX 22 22 HIS B 726 GLY B 730 5 5 HELIX 23 23 SER B 759 VAL B 772 1 14 HELIX 24 24 GLY B 799 TYR B 813 1 15 SHEET 1 A 4 GLN A 26 GLN A 32 0 SHEET 2 A 4 VAL A 40 THR A 46 -1 O THR A 45 N GLN A 26 SHEET 3 A 4 PHE A 85 ILE A 91 -1 O CYS A 89 N ILE A 42 SHEET 4 A 4 THR A 72 VAL A 74 -1 N THR A 72 O HIS A 88 SHEET 1 B 4 LYS A 67 MET A 70 0 SHEET 2 B 4 LYS A 55 SER A 60 -1 N TYR A 58 O LYS A 67 SHEET 3 B 4 LYS A 99 LEU A 104 -1 O TYR A 101 N TRP A 59 SHEET 4 B 4 ARG A 111 VAL A 116 -1 O PHE A 113 N TYR A 102 SHEET 1 C 2 LYS A 77 TYR A 78 0 SHEET 2 C 2 TYR A 81 THR A 82 -1 O TYR A 81 N TYR A 78 SHEET 1 D 6 TRP A 194 ILE A 195 0 SHEET 2 D 6 ALA A 157 PHE A 160 1 N VAL A 158 O ILE A 195 SHEET 3 D 6 TYR A 127 ILE A 132 1 N GLY A 130 O ALA A 157 SHEET 4 D 6 GLY A 387 ILE A 393 -1 O ILE A 393 N TYR A 127 SHEET 5 D 6 HIS A 398 ARG A 405 -1 O HIS A 400 N ASP A 392 SHEET 6 D 6 ASP A 415 LEU A 420 -1 O LEU A 419 N ALA A 399 SHEET 1 E 7 TYR A 237 ARG A 241 0 SHEET 2 E 7 ALA A 244 VAL A 248 -1 O VAL A 248 N TYR A 237 SHEET 3 E 7 TRP A 279 LEU A 283 1 O ILE A 281 N ILE A 247 SHEET 4 E 7 ILE A 317 SER A 320 1 O PHE A 319 N VAL A 282 SHEET 5 E 7 VAL A 354 ILE A 358 1 O ILE A 356 N VAL A 318 SHEET 6 E 7 TYR A 326 SER A 329 -1 N GLU A 327 O THR A 357 SHEET 7 E 7 SER A 379 GLU A 383 -1 O GLU A 383 N TYR A 326 SHEET 1 F 2 VAL A 332 SER A 333 0 SHEET 2 F 2 VAL A 347 SER A 348 -1 O VAL A 347 N SER A 333 SHEET 1 G 4 GLN B 526 GLN B 532 0 SHEET 2 G 4 VAL B 540 THR B 546 -1 O THR B 545 N GLN B 526 SHEET 3 G 4 PHE B 585 ILE B 591 -1 O HIS B 587 N TRP B 544 SHEET 4 G 4 THR B 572 VAL B 574 -1 N VAL B 574 O ILE B 586 SHEET 1 H 4 LYS B 567 MET B 570 0 SHEET 2 H 4 LYS B 555 SER B 560 -1 N VAL B 556 O ALA B 569 SHEET 3 H 4 LYS B 599 LEU B 604 -1 O TYR B 601 N TRP B 559 SHEET 4 H 4 ARG B 611 VAL B 616 -1 O PHE B 613 N TYR B 602 SHEET 1 I 2 LYS B 577 TYR B 578 0 SHEET 2 I 2 TYR B 581 THR B 582 -1 O TYR B 581 N TYR B 578 SHEET 1 J 6 TRP B 694 ILE B 695 0 SHEET 2 J 6 ALA B 657 PHE B 660 1 N VAL B 658 O ILE B 695 SHEET 3 J 6 TYR B 627 ILE B 632 1 N GLY B 630 O ALA B 657 SHEET 4 J 6 GLY B 887 ILE B 893 -1 O GLY B 889 N LEU B 631 SHEET 5 J 6 HIS B 898 ARG B 905 -1 O HIS B 900 N ASP B 892 SHEET 6 J 6 ASP B 915 LEU B 920 -1 O LEU B 919 N ALA B 899 SHEET 1 K 7 TYR B 737 ARG B 741 0 SHEET 2 K 7 ALA B 744 VAL B 748 -1 O VAL B 748 N TYR B 737 SHEET 3 K 7 TRP B 779 LEU B 783 1 O ILE B 781 N ILE B 747 SHEET 4 K 7 ILE B 817 SER B 820 1 O PHE B 819 N VAL B 782 SHEET 5 K 7 VAL B 854 ILE B 858 1 O ILE B 856 N VAL B 818 SHEET 6 K 7 TYR B 826 SER B 829 -1 N GLU B 827 O THR B 857 SHEET 7 K 7 SER B 879 GLU B 883 -1 O GLU B 883 N TYR B 826 SHEET 1 L 2 VAL B 832 SER B 833 0 SHEET 2 L 2 VAL B 847 SER B 848 -1 O VAL B 847 N SER B 833 SSBOND 1 CYS A 344 CYS B 844 1555 1555 2.05 LINK ND2 ASN A 80 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN A 142 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN A 273 C1 NAG F 1 1555 1555 1.45 LINK ND2 ASN A 395 C1 NAG E 1 1555 1555 1.45 LINK ND2 ASN B 580 C1 NAG G 1 1555 1555 1.45 LINK ND2 ASN B 642 C1 NAG B 934 1555 1555 1.45 LINK ND2 ASN B 773 C1 NAG I 1 1555 1555 1.45 LINK ND2 ASN B 895 C1 NAG H 1 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.40 LINK O3 NAG C 1 C1 FUC C 4 1555 1555 1.40 LINK O4 NAG C 2 C1 MAN C 3 1555 1555 1.40 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.38 LINK O3 NAG E 1 C1 FUC E 2 1555 1555 1.39 LINK O3 NAG F 1 C1 FUC F 2 1555 1555 1.40 LINK O3 NAG G 1 C1 FUC G 2 1555 1555 1.39 LINK O4 NAG G 1 C1 NAG G 3 1555 1555 1.38 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.38 LINK O3 NAG H 1 C1 FUC H 4 1555 1555 1.39 LINK O4 NAG H 2 C1 MAN H 3 1555 1555 1.39 LINK O3 NAG I 1 C1 FUC I 2 1555 1555 1.40 LINK O4 NAG I 1 C1 NAG I 3 1555 1555 1.39 LINK OD2 ASP A 134 FE FE A 429 1555 1555 2.36 LINK OD2 ASP A 163 FE FE A 429 1555 1555 2.24 LINK OD2 ASP A 163 MN MN A 430 1555 1555 2.21 LINK OH TYR A 166 FE FE A 429 1555 1555 1.86 LINK OD1 ASN A 200 MN MN A 430 1555 1555 2.11 LINK NE2 HIS A 285 MN MN A 430 1555 1555 2.16 LINK ND1 HIS A 322 MN MN A 430 1555 1555 2.15 LINK NE2 HIS A 324 FE FE A 429 1555 1555 2.69 LINK FE FE A 429 O1 PO4 A 431 1555 1555 2.59 LINK FE FE A 429 O3 PO4 A 431 1555 1555 2.18 LINK MN MN A 430 O3 PO4 A 431 1555 1555 2.52 LINK MN MN A 430 O2 PO4 A 431 1555 1555 2.69 LINK OD2 ASP B 634 FE FE B 929 1555 1555 2.34 LINK OD2 ASP B 663 FE FE B 929 1555 1555 2.23 LINK OD2 ASP B 663 MN MN B 930 1555 1555 2.32 LINK OH TYR B 666 FE FE B 929 1555 1555 1.90 LINK OD1 ASN B 700 MN MN B 930 1555 1555 2.07 LINK NE2 HIS B 785 MN MN B 930 1555 1555 2.10 LINK ND1 HIS B 822 MN MN B 930 1555 1555 2.05 LINK NE2 HIS B 824 FE FE B 929 1555 1555 2.69 LINK FE FE B 929 O1 PO4 B 931 1555 1555 1.85 LINK FE FE B 929 P PO4 B 931 1555 1555 2.68 LINK MN MN B 930 O2 PO4 B 931 1555 1555 2.03 CISPEP 1 LEU A 1 PRO A 2 0 -0.11 CISPEP 2 GLN A 373 PRO A 374 0 -0.46 CISPEP 3 GLN B 873 PRO B 874 0 -0.75 CRYST1 116.150 116.150 291.950 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008610 0.004971 0.000000 0.00000 SCALE2 0.000000 0.009941 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003425 0.00000