HEADER HORMONE/GROWTH FACTOR RECEPTOR 12-NOV-04 1XZX TITLE THYROXINE-THYROID HORMONE RECEPTOR INTERACTIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYROID HORMONE RECEPTOR BETA-1; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN (RESIDUES 202-461); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: THRB, ERBA2, NR1A2, THR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-TRBE202 KEYWDS HORMONE/GROWTH FACTOR RECEPTOR, HORMONE-GROWTH FACTOR RECEPTOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.SANDLER,P.WEBB,J.W.APRILETTI,B.R.HUBER,M.TOGASHI,S.T.CUNHA LIMA, AUTHOR 2 S.JURIC,S.NILSSON,R.WAGNER,R.J.FLETTERICK,J.D.BAXTER REVDAT 7 03-APR-24 1XZX 1 REMARK REVDAT 6 15-NOV-23 1XZX 1 REMARK SEQADV LINK ATOM REVDAT 5 11-OCT-17 1XZX 1 REMARK REVDAT 4 13-JUL-11 1XZX 1 VERSN REVDAT 3 24-FEB-09 1XZX 1 VERSN REVDAT 2 13-DEC-05 1XZX 1 JRNL REVDAT 1 07-DEC-04 1XZX 0 JRNL AUTH B.SANDLER,P.WEBB,J.W.APRILETTI,B.R.HUBER,M.TOGASHI, JRNL AUTH 2 S.T.CUNHA LIMA,S.JURIC,S.NILSSON,R.WAGNER,R.J.FLETTERICK, JRNL AUTH 3 J.D.BAXTER JRNL TITL THYROXINE-THYROID HORMONE RECEPTOR INTERACTIONS. JRNL REF J.BIOL.CHEM. V. 279 55801 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15466465 JRNL DOI 10.1074/JBC.M410124200 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 12903 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1293 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 851 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1920 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1916 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 66 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.88000 REMARK 3 B22 (A**2) : 0.88000 REMARK 3 B33 (A**2) : -1.32000 REMARK 3 B12 (A**2) : 0.44000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.263 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.173 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.546 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1983 ; 0.031 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): 1827 ; 0.002 ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2693 ; 2.310 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): 4237 ; 1.145 ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 247 ; 7.603 ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 310 ; 0.151 ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2184 ; 0.015 ; NULL REMARK 3 GENERAL PLANES OTHERS (A): 399 ; 0.019 ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 549 ; 0.287 ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2131 ; 0.247 ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1195 ; 0.098 ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 55 ; 0.275 ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.311 ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): 33 ; 0.294 ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.291 ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1243 ; 1.296 ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1995 ; 2.408 ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 740 ; 3.652 ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 698 ; 5.876 ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1XZX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1000030940. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.09720 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16507 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.69200 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: TRB-TRIAC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, CACODYLATE, PH 7.2, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 279K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.64767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.29533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 87.29533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.64767 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 174.59067 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH X 22 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET X 181 REMARK 465 GLY X 182 REMARK 465 SER X 183 REMARK 465 SER X 184 REMARK 465 HIS X 185 REMARK 465 HIS X 186 REMARK 465 HIS X 187 REMARK 465 HIS X 188 REMARK 465 HIS X 189 REMARK 465 HIS X 190 REMARK 465 SER X 191 REMARK 465 SER X 192 REMARK 465 GLY X 193 REMARK 465 LEU X 194 REMARK 465 VAL X 195 REMARK 465 PRO X 196 REMARK 465 ARG X 197 REMARK 465 GLY X 198 REMARK 465 SER X 199 REMARK 465 GLN X 252 REMARK 465 ALA X 253 REMARK 465 PRO X 254 REMARK 465 ILE X 255 REMARK 465 VAL X 256 REMARK 465 ASN X 257 REMARK 465 ALA X 258 REMARK 465 PRO X 259 REMARK 465 GLU X 260 REMARK 465 GLY X 261 REMARK 465 GLY X 262 REMARK 465 LYS X 263 REMARK 465 ASP X 461 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS X 200 CG ND1 CD2 CE1 NE2 REMARK 470 MET X 201 CG SD CE REMARK 470 GLU X 203 CG CD OE1 OE2 REMARK 470 LYS X 206 CG CD CE NZ REMARK 470 HIS X 210 CG ND1 CD2 CE1 NE2 REMARK 470 GLU X 217 CG CD OE1 OE2 REMARK 470 LYS X 223 CG CD CE NZ REMARK 470 GLU X 227 CG CD OE1 OE2 REMARK 470 LYS X 242 CG CD CE NZ REMARK 470 LYS X 274 CG CD CE NZ REMARK 470 GLU X 324 CG CD OE1 OE2 REMARK 470 GLU X 390 CG CD OE1 OE2 REMARK 470 GLU X 393 CG CD OE1 OE2 REMARK 470 LYS X 394 CG CD CE NZ REMARK 470 GLU X 445 CG CD OE1 OE2 REMARK 470 GLU X 449 CG CD OE1 OE2 REMARK 470 LEU X 450 CG CD1 CD2 REMARK 470 GLU X 460 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET X 201 O HOH X 15 1.83 REMARK 500 O HOH X 34 O HOH X 35 2.17 REMARK 500 OD1 ASN X 364 O HOH X 29 2.19 REMARK 500 OG1 THR X 277 O HOH X 51 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU X 248 CG GLU X 248 CD 0.097 REMARK 500 GLU X 311 CD GLU X 311 OE2 0.068 REMARK 500 LYS X 342 CE LYS X 342 NZ 0.156 REMARK 500 TYR X 409 CD1 TYR X 409 CE1 0.102 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG X 282 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP X 285 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG X 320 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP X 366 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET X 201 48.92 89.14 REMARK 500 ALA X 234 118.21 -21.98 REMARK 500 LYS X 242 21.61 -72.91 REMARK 500 GLU X 248 -35.54 -37.65 REMARK 500 HIS X 413 60.86 -102.27 REMARK 500 GLU X 445 -91.69 -61.80 REMARK 500 CYS X 446 160.40 -46.83 REMARK 500 PRO X 447 -133.45 -49.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE X 250 GLY X 251 -131.12 REMARK 500 PRO X 447 THR X 448 147.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CAC X 505 AS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH X 37 O REMARK 620 2 CYS X 434 SG 110.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC X 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC X 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC X 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC X 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC X 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC X 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T3 X 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Y0X RELATED DB: PDB DBREF 1XZX X 202 461 UNP P10828 THB1_HUMAN 202 461 SEQADV 1XZX MET X 181 UNP P10828 EXPRESSION TAG SEQADV 1XZX GLY X 182 UNP P10828 EXPRESSION TAG SEQADV 1XZX SER X 183 UNP P10828 EXPRESSION TAG SEQADV 1XZX SER X 184 UNP P10828 EXPRESSION TAG SEQADV 1XZX HIS X 185 UNP P10828 EXPRESSION TAG SEQADV 1XZX HIS X 186 UNP P10828 EXPRESSION TAG SEQADV 1XZX HIS X 187 UNP P10828 EXPRESSION TAG SEQADV 1XZX HIS X 188 UNP P10828 EXPRESSION TAG SEQADV 1XZX HIS X 189 UNP P10828 EXPRESSION TAG SEQADV 1XZX HIS X 190 UNP P10828 EXPRESSION TAG SEQADV 1XZX SER X 191 UNP P10828 EXPRESSION TAG SEQADV 1XZX SER X 192 UNP P10828 EXPRESSION TAG SEQADV 1XZX GLY X 193 UNP P10828 EXPRESSION TAG SEQADV 1XZX LEU X 194 UNP P10828 EXPRESSION TAG SEQADV 1XZX VAL X 195 UNP P10828 EXPRESSION TAG SEQADV 1XZX PRO X 196 UNP P10828 EXPRESSION TAG SEQADV 1XZX ARG X 197 UNP P10828 EXPRESSION TAG SEQADV 1XZX GLY X 198 UNP P10828 EXPRESSION TAG SEQADV 1XZX SER X 199 UNP P10828 EXPRESSION TAG SEQADV 1XZX HIS X 200 UNP P10828 EXPRESSION TAG SEQADV 1XZX MET X 201 UNP P10828 EXPRESSION TAG SEQRES 1 X 281 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 X 281 LEU VAL PRO ARG GLY SER HIS MET GLU GLU LEU GLN LYS SEQRES 3 X 281 SER ILE GLY HIS LYS PRO GLU PRO THR ASP GLU GLU TRP SEQRES 4 X 281 GLU LEU ILE LYS THR VAL THR GLU ALA HIS VAL ALA THR SEQRES 5 X 281 ASN ALA GLN GLY SER HIS TRP LYS GLN LYS ARG LYS PHE SEQRES 6 X 281 LEU PRO GLU ASP ILE GLY GLN ALA PRO ILE VAL ASN ALA SEQRES 7 X 281 PRO GLU GLY GLY LYS VAL ASP LEU GLU ALA PHE SER HIS SEQRES 8 X 281 PHE THR LYS ILE ILE THR PRO ALA ILE THR ARG VAL VAL SEQRES 9 X 281 ASP PHE ALA LYS LYS LEU PRO MET PHE CYS GLU LEU PRO SEQRES 10 X 281 CYS GLU ASP GLN ILE ILE LEU LEU LYS GLY CYS CYS MET SEQRES 11 X 281 GLU ILE MET SER LEU ARG ALA ALA VAL ARG TYR ASP PRO SEQRES 12 X 281 GLU SER GLU THR LEU THR LEU ASN GLY GLU MET ALA VAL SEQRES 13 X 281 THR ARG GLY GLN LEU LYS ASN GLY GLY LEU GLY VAL VAL SEQRES 14 X 281 SER ASP ALA ILE PHE ASP LEU GLY MET SER LEU SER SER SEQRES 15 X 281 PHE ASN LEU ASP ASP THR GLU VAL ALA LEU LEU GLN ALA SEQRES 16 X 281 VAL LEU LEU MET SER SER ASP ARG PRO GLY LEU ALA CYS SEQRES 17 X 281 VAL GLU ARG ILE GLU LYS TYR GLN ASP SER PHE LEU LEU SEQRES 18 X 281 ALA PHE GLU HIS TYR ILE ASN TYR ARG LYS HIS HIS VAL SEQRES 19 X 281 THR HIS PHE TRP PRO LYS LEU LEU MET LYS VAL THR ASP SEQRES 20 X 281 LEU ARG MET ILE GLY ALA CYS HIS ALA SER ARG PHE LEU SEQRES 21 X 281 HIS MET LYS VAL GLU CYS PRO THR GLU LEU PHE PRO PRO SEQRES 22 X 281 LEU PHE LEU GLU VAL PHE GLU ASP HET CAC X 501 1 HET CAC X 502 1 HET CAC X 503 1 HET CAC X 504 1 HET CAC X 505 1 HET CAC X 506 1 HET T3 X 500 23 HETNAM CAC CACODYLATE ION HETNAM T3 3,5,3'TRIIODOTHYRONINE HETSYN CAC DIMETHYLARSINATE HETSYN T3 T3; THYROID HORMONE; LIOTHYRONINE FORMUL 2 CAC 6(C2 H6 AS O2 1-) FORMUL 8 T3 C15 H12 I3 N O4 FORMUL 9 HOH *66(H2 O) HELIX 1 1 MET X 201 ILE X 208 1 8 HELIX 2 2 THR X 215 ASN X 233 1 19 HELIX 3 3 ASP X 265 LYS X 289 1 25 HELIX 4 4 LEU X 290 GLU X 295 1 6 HELIX 5 5 PRO X 297 VAL X 319 1 23 HELIX 6 6 THR X 337 GLY X 344 1 8 HELIX 7 7 GLY X 347 SER X 361 1 15 HELIX 8 8 ASP X 366 MET X 379 1 14 HELIX 9 9 CYS X 388 LYS X 411 1 24 HELIX 10 10 HIS X 416 GLU X 445 1 30 HELIX 11 11 PRO X 452 GLU X 460 1 9 SHEET 1 A 3 LYS X 244 PHE X 245 0 SHEET 2 A 3 MET X 334 VAL X 336 1 O ALA X 335 N LYS X 244 SHEET 3 A 3 LEU X 328 LEU X 330 -1 N LEU X 330 O MET X 334 LINK O HOH X 37 AS CAC X 505 6556 1555 2.89 LINK O HOH X 54 AS CAC X 503 2665 1555 2.80 LINK SG CYS X 294 AS CAC X 501 1555 1555 2.38 LINK SG CYS X 298 AS CAC X 502 1555 1555 2.13 LINK SG CYS X 388 AS CAC X 504 1555 1555 2.17 LINK SG CYS X 434 AS CAC X 505 1555 1555 2.59 LINK SG CYS X 434 AS CAC X 506 1555 1555 2.70 SITE 1 AC1 1 CYS X 294 SITE 1 AC2 2 CYS X 298 GLU X 299 SITE 1 AC3 3 HOH X 54 HIS X 210 CYS X 298 SITE 1 AC4 2 CYS X 388 ARG X 391 SITE 1 AC5 3 HOH X 37 ASP X 427 CYS X 434 SITE 1 AC6 1 CYS X 434 SITE 1 AC7 15 HOH X 38 PHE X 272 ILE X 275 ILE X 276 SITE 2 AC7 15 ALA X 279 ARG X 282 MET X 313 ARG X 316 SITE 3 AC7 15 THR X 329 LEU X 330 ASN X 331 LEU X 346 SITE 4 AC7 15 ILE X 353 HIS X 435 PHE X 455 CRYST1 68.764 68.764 130.943 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014500 0.008400 0.000000 0.00000 SCALE2 0.000000 0.016800 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007600 0.00000