data_1Y03 # _entry.id 1Y03 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1Y03 pdb_00001y03 10.2210/pdb1y03/pdb RCSB RCSB030946 ? ? WWPDB D_1000030946 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-03-15 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 5 'Structure model' 1 4 2024-05-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1Y03 _pdbx_database_status.recvd_initial_deposition_date 2004-11-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1Y04 'The same protein at 268 K' unspecified PDB 1WFA 'Type 1 antifreeze protein from Winter Flounder (4 degrees C)' unspecified PDB 1WFB 'Type 1 antifreeze protein from Winter Flounder (-180 degrees C)' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kwan, A.H.Y.' 1 'Fairley, K.' 2 'Anderberg, P.I.' 3 'Liew, C.W.' 4 'Harding, M.M.' 5 'Mackay, J.P.' 6 # _citation.id primary _citation.title 'Solution structure of a recombinant type I sculpin antifreeze protein' _citation.journal_abbrev Biochemistry _citation.journal_volume 44 _citation.page_first 1980 _citation.page_last 1988 _citation.year 2005 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15697223 _citation.pdbx_database_id_DOI 10.1021/bi047782j # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kwan, A.H.Y.' 1 ? primary 'Fairley, K.' 2 ? primary 'Anderberg, P.I.' 3 ? primary 'Liew, C.W.' 4 ? primary 'Harding, M.M.' 5 ? primary 'Mackay, J.P.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Antifreeze peptide SS-3' _entity.formula_weight 3087.467 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name rSS3 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSMNAPARAAAKTAADALAAAKKTAADAAAAAAAA _entity_poly.pdbx_seq_one_letter_code_can GSMNAPARAAAKTAADALAAAKKTAADAAAAAAAA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 MET n 1 4 ASN n 1 5 ALA n 1 6 PRO n 1 7 ALA n 1 8 ARG n 1 9 ALA n 1 10 ALA n 1 11 ALA n 1 12 LYS n 1 13 THR n 1 14 ALA n 1 15 ALA n 1 16 ASP n 1 17 ALA n 1 18 LEU n 1 19 ALA n 1 20 ALA n 1 21 ALA n 1 22 LYS n 1 23 LYS n 1 24 THR n 1 25 ALA n 1 26 ALA n 1 27 ASP n 1 28 ALA n 1 29 ALA n 1 30 ALA n 1 31 ALA n 1 32 ALA n 1 33 ALA n 1 34 ALA n 1 35 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'shorthorn sculpin' _entity_src_gen.gene_src_genus Myoxocephalus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Myoxocephalus scorpius' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 8097 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX-2T _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 MET 3 3 3 MET MET A . n A 1 4 ASN 4 4 4 ASN ASN A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 PRO 6 6 6 PRO PRO A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 ALA 35 35 35 ALA ALA A . n # _exptl.entry_id 1Y03 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1Y03 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1Y03 _struct.title 'Solution structure of a recombinant type I sculpin antifreeze protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1Y03 _struct_keywords.pdbx_keywords 'ANTIFREEZE PROTEIN' _struct_keywords.text 'type I antifreeze protein, sculpin, NMR spectroscopy, solution structure, a-helix, ANTIFREEZE PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ANP3_MYOSC _struct_ref.pdbx_db_accession P04367 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MNAPARAAAKTAADALAAAKKTAADAAAAAAAA _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1Y03 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 35 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P04367 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 33 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 3 _struct_ref_seq.pdbx_auth_seq_align_end 35 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1Y03 GLY A 1 ? UNP P04367 ? ? 'cloning artifact' 1 1 1 1Y03 SER A 2 ? UNP P04367 ? ? 'cloning artifact' 2 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 4 ? ALA A 9 ? ASN A 4 ALA A 9 1 ? 6 HELX_P HELX_P2 2 ALA A 11 ? ALA A 31 ? ALA A 11 ALA A 31 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 HZ3 A LYS 23 ? ? OD2 A ASP 27 ? ? 1.58 2 3 HZ3 A LYS 12 ? ? OD2 A ASP 16 ? ? 1.57 3 8 HZ2 A LYS 12 ? ? OD1 A ASP 16 ? ? 1.60 4 9 HZ1 A LYS 12 ? ? OD2 A ASP 16 ? ? 1.57 5 10 HZ1 A LYS 23 ? ? OD2 A ASP 27 ? ? 1.60 6 12 HZ3 A LYS 12 ? ? OD2 A ASP 16 ? ? 1.59 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 34 ? ? -103.35 62.02 2 3 SER A 2 ? ? -68.14 91.71 3 3 MET A 3 ? ? -159.81 40.59 4 3 ALA A 34 ? ? -119.37 66.18 5 4 SER A 2 ? ? 59.79 -135.51 6 5 MET A 3 ? ? -159.47 -49.78 7 5 ALA A 32 ? ? -87.83 44.38 8 6 ALA A 32 ? ? -86.87 43.56 9 6 ALA A 34 ? ? -162.52 95.91 10 7 LYS A 12 ? ? -23.44 -77.63 11 8 ALA A 32 ? ? -98.65 30.11 12 9 ALA A 32 ? ? -100.46 44.79 13 10 LYS A 12 ? ? -48.25 -73.77 14 10 ALA A 32 ? ? -101.06 75.21 15 11 MET A 3 ? ? -151.16 39.03 16 12 ALA A 32 ? ? -100.77 42.05 17 12 ALA A 34 ? ? -110.97 64.01 18 15 ALA A 34 ? ? -158.86 69.72 19 16 ALA A 32 ? ? -93.43 30.34 20 17 MET A 3 ? ? -96.35 41.29 21 17 ALA A 32 ? ? -100.48 41.46 22 20 ALA A 32 ? ? -90.55 48.08 # _pdbx_nmr_ensemble.entry_id 1Y03 _pdbx_nmr_ensemble.conformers_calculated_total_number 500 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1Y03 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1mM rSS3; pH adjusted to 5.0 using NaOH' '95% H2O/5% D2O' 2 '1mM rSS3 U-15N,13C; pH adjusted to 5.0 using NaOH' '95% H2O/5% D2O' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 278 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 5 _pdbx_nmr_exptl_sample_conditions.ionic_strength low _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 '2D TOCSY' 2 1 1 '2D NOESY' 3 1 1 DQF-COSY 4 2 1 HNHA 5 2 1 HNCA 6 2 1 HNCACB 7 2 1 'CBCA(CO)NH' 8 2 1 HNCO 9 2 1 HNCA-ECOSY 10 2 1 HET-NOE # _pdbx_nmr_details.entry_id 1Y03 _pdbx_nmr_details.text 'This structure was determined using standard triple-resonance NMR spectroscopy.' # _pdbx_nmr_refine.entry_id 1Y03 _pdbx_nmr_refine.method 'simulated annealing, molecular dynamics, torsion angle dynamics' _pdbx_nmr_refine.details ;Structure calculations were performed using the package ARIA 1.2. Final stuctures are based on 437 unambiguous restraints, 18 sets of ambiguous restraints, 46 dihedral angle restraints and 18 HN residual dipolar coupling restraints. ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal XwinNMR 2.5 processing Bruker 1 XEASY 1.3.13 'data analysis' 'Bartels et al' 2 Sparky 3 'data analysis' 'Goddard and Kneller' 3 ARIA 1.2 'structure solution' 'Linge et al' 4 ARIA 1.2 refinement 'Linge et al' 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLY N N N N 74 GLY CA C N N 75 GLY C C N N 76 GLY O O N N 77 GLY OXT O N N 78 GLY H H N N 79 GLY H2 H N N 80 GLY HA2 H N N 81 GLY HA3 H N N 82 GLY HXT H N N 83 LEU N N N N 84 LEU CA C N S 85 LEU C C N N 86 LEU O O N N 87 LEU CB C N N 88 LEU CG C N N 89 LEU CD1 C N N 90 LEU CD2 C N N 91 LEU OXT O N N 92 LEU H H N N 93 LEU H2 H N N 94 LEU HA H N N 95 LEU HB2 H N N 96 LEU HB3 H N N 97 LEU HG H N N 98 LEU HD11 H N N 99 LEU HD12 H N N 100 LEU HD13 H N N 101 LEU HD21 H N N 102 LEU HD22 H N N 103 LEU HD23 H N N 104 LEU HXT H N N 105 LYS N N N N 106 LYS CA C N S 107 LYS C C N N 108 LYS O O N N 109 LYS CB C N N 110 LYS CG C N N 111 LYS CD C N N 112 LYS CE C N N 113 LYS NZ N N N 114 LYS OXT O N N 115 LYS H H N N 116 LYS H2 H N N 117 LYS HA H N N 118 LYS HB2 H N N 119 LYS HB3 H N N 120 LYS HG2 H N N 121 LYS HG3 H N N 122 LYS HD2 H N N 123 LYS HD3 H N N 124 LYS HE2 H N N 125 LYS HE3 H N N 126 LYS HZ1 H N N 127 LYS HZ2 H N N 128 LYS HZ3 H N N 129 LYS HXT H N N 130 MET N N N N 131 MET CA C N S 132 MET C C N N 133 MET O O N N 134 MET CB C N N 135 MET CG C N N 136 MET SD S N N 137 MET CE C N N 138 MET OXT O N N 139 MET H H N N 140 MET H2 H N N 141 MET HA H N N 142 MET HB2 H N N 143 MET HB3 H N N 144 MET HG2 H N N 145 MET HG3 H N N 146 MET HE1 H N N 147 MET HE2 H N N 148 MET HE3 H N N 149 MET HXT H N N 150 PRO N N N N 151 PRO CA C N S 152 PRO C C N N 153 PRO O O N N 154 PRO CB C N N 155 PRO CG C N N 156 PRO CD C N N 157 PRO OXT O N N 158 PRO H H N N 159 PRO HA H N N 160 PRO HB2 H N N 161 PRO HB3 H N N 162 PRO HG2 H N N 163 PRO HG3 H N N 164 PRO HD2 H N N 165 PRO HD3 H N N 166 PRO HXT H N N 167 SER N N N N 168 SER CA C N S 169 SER C C N N 170 SER O O N N 171 SER CB C N N 172 SER OG O N N 173 SER OXT O N N 174 SER H H N N 175 SER H2 H N N 176 SER HA H N N 177 SER HB2 H N N 178 SER HB3 H N N 179 SER HG H N N 180 SER HXT H N N 181 THR N N N N 182 THR CA C N S 183 THR C C N N 184 THR O O N N 185 THR CB C N R 186 THR OG1 O N N 187 THR CG2 C N N 188 THR OXT O N N 189 THR H H N N 190 THR H2 H N N 191 THR HA H N N 192 THR HB H N N 193 THR HG1 H N N 194 THR HG21 H N N 195 THR HG22 H N N 196 THR HG23 H N N 197 THR HXT H N N 198 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLY N CA sing N N 70 GLY N H sing N N 71 GLY N H2 sing N N 72 GLY CA C sing N N 73 GLY CA HA2 sing N N 74 GLY CA HA3 sing N N 75 GLY C O doub N N 76 GLY C OXT sing N N 77 GLY OXT HXT sing N N 78 LEU N CA sing N N 79 LEU N H sing N N 80 LEU N H2 sing N N 81 LEU CA C sing N N 82 LEU CA CB sing N N 83 LEU CA HA sing N N 84 LEU C O doub N N 85 LEU C OXT sing N N 86 LEU CB CG sing N N 87 LEU CB HB2 sing N N 88 LEU CB HB3 sing N N 89 LEU CG CD1 sing N N 90 LEU CG CD2 sing N N 91 LEU CG HG sing N N 92 LEU CD1 HD11 sing N N 93 LEU CD1 HD12 sing N N 94 LEU CD1 HD13 sing N N 95 LEU CD2 HD21 sing N N 96 LEU CD2 HD22 sing N N 97 LEU CD2 HD23 sing N N 98 LEU OXT HXT sing N N 99 LYS N CA sing N N 100 LYS N H sing N N 101 LYS N H2 sing N N 102 LYS CA C sing N N 103 LYS CA CB sing N N 104 LYS CA HA sing N N 105 LYS C O doub N N 106 LYS C OXT sing N N 107 LYS CB CG sing N N 108 LYS CB HB2 sing N N 109 LYS CB HB3 sing N N 110 LYS CG CD sing N N 111 LYS CG HG2 sing N N 112 LYS CG HG3 sing N N 113 LYS CD CE sing N N 114 LYS CD HD2 sing N N 115 LYS CD HD3 sing N N 116 LYS CE NZ sing N N 117 LYS CE HE2 sing N N 118 LYS CE HE3 sing N N 119 LYS NZ HZ1 sing N N 120 LYS NZ HZ2 sing N N 121 LYS NZ HZ3 sing N N 122 LYS OXT HXT sing N N 123 MET N CA sing N N 124 MET N H sing N N 125 MET N H2 sing N N 126 MET CA C sing N N 127 MET CA CB sing N N 128 MET CA HA sing N N 129 MET C O doub N N 130 MET C OXT sing N N 131 MET CB CG sing N N 132 MET CB HB2 sing N N 133 MET CB HB3 sing N N 134 MET CG SD sing N N 135 MET CG HG2 sing N N 136 MET CG HG3 sing N N 137 MET SD CE sing N N 138 MET CE HE1 sing N N 139 MET CE HE2 sing N N 140 MET CE HE3 sing N N 141 MET OXT HXT sing N N 142 PRO N CA sing N N 143 PRO N CD sing N N 144 PRO N H sing N N 145 PRO CA C sing N N 146 PRO CA CB sing N N 147 PRO CA HA sing N N 148 PRO C O doub N N 149 PRO C OXT sing N N 150 PRO CB CG sing N N 151 PRO CB HB2 sing N N 152 PRO CB HB3 sing N N 153 PRO CG CD sing N N 154 PRO CG HG2 sing N N 155 PRO CG HG3 sing N N 156 PRO CD HD2 sing N N 157 PRO CD HD3 sing N N 158 PRO OXT HXT sing N N 159 SER N CA sing N N 160 SER N H sing N N 161 SER N H2 sing N N 162 SER CA C sing N N 163 SER CA CB sing N N 164 SER CA HA sing N N 165 SER C O doub N N 166 SER C OXT sing N N 167 SER CB OG sing N N 168 SER CB HB2 sing N N 169 SER CB HB3 sing N N 170 SER OG HG sing N N 171 SER OXT HXT sing N N 172 THR N CA sing N N 173 THR N H sing N N 174 THR N H2 sing N N 175 THR CA C sing N N 176 THR CA CB sing N N 177 THR CA HA sing N N 178 THR C O doub N N 179 THR C OXT sing N N 180 THR CB OG1 sing N N 181 THR CB CG2 sing N N 182 THR CB HB sing N N 183 THR OG1 HG1 sing N N 184 THR CG2 HG21 sing N N 185 THR CG2 HG22 sing N N 186 THR CG2 HG23 sing N N 187 THR OXT HXT sing N N 188 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model DRX _pdbx_nmr_spectrometer.field_strength 600 # _atom_sites.entry_id 1Y03 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_