HEADER LIPID BINDING PROTEIN 15-NOV-04 1Y0G TITLE CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI YCEI PROTEIN, STRUCTURAL TITLE 2 GENOMICS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN YCEI; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: YCEI; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS LIPID BINDING PROTEIN, LIPOCALIN, COFACTOR, COENZYME, DEHYDROGENASE, KEYWDS 2 HYDROLASE, PREDICTED, STRUCTURAL GENOMICS, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI, NYSGXRC, NEW YORK SGX RESEARCH CENTER FOR KEYWDS 4 STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR Y.V.PATSKOVSKY,B.STROKOPYTOV,U.RAMAGOPAL,S.C.ALMO,S.K.BURLEY,NEW YORK AUTHOR 2 SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 6 23-AUG-23 1Y0G 1 REMARK REVDAT 5 03-FEB-21 1Y0G 1 AUTHOR REMARK REVDAT 4 11-OCT-17 1Y0G 1 REMARK REVDAT 3 24-FEB-09 1Y0G 1 VERSN REVDAT 2 25-JAN-05 1Y0G 1 AUTHOR KEYWDS REVDAT 1 21-DEC-04 1Y0G 0 JRNL AUTH Y.V.PATSKOVSKY,B.STROKOPYTOV,U.RAMAGOPAL,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI YCEI PERIPLASMIC JRNL TITL 2 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 273430.280 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.1000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.1 REMARK 3 NUMBER OF REFLECTIONS : 38523 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1175 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5191 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE : 0.3510 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 166 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.027 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5292 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 188 REMARK 3 SOLVENT ATOMS : 316 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.30000 REMARK 3 B22 (A**2) : 2.27000 REMARK 3 B33 (A**2) : 2.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.21000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.28 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.36 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.490 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.960 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.110 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.760 ; 3.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.610 ; 4.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 18.35 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN.PARAM REMARK 3 PARAMETER FILE 2 : WATER.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Y0G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1000030959. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 83.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X9A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42065 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : 0.06600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.37400 REMARK 200 R SYM FOR SHELL (I) : 0.43200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BRUTE REMARK 200 STARTING MODEL: PDB ENTRY 1FU6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8000, 0.1M SODIUM CACODYLATE, PH REMARK 280 6.50, VAPOR DIFFUSION, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 94.08500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.96500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 94.08500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.96500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HOMODIMER, THE ASYMMETRIC UNIT REMARK 300 CONTAINS TWO HOMODIMERS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 SER A 4 REMARK 465 LEU A 5 REMARK 465 LEU A 6 REMARK 465 GLY A 7 REMARK 465 LEU A 8 REMARK 465 THR A 9 REMARK 465 PHE A 10 REMARK 465 ALA A 11 REMARK 465 SER A 12 REMARK 465 LEU A 13 REMARK 465 MET A 14 REMARK 465 PHE A 15 REMARK 465 SER A 16 REMARK 465 ALA A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 ALA A 20 REMARK 465 VAL A 21 REMARK 465 ALA A 22 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 LYS B 3 REMARK 465 SER B 4 REMARK 465 LEU B 5 REMARK 465 LEU B 6 REMARK 465 GLY B 7 REMARK 465 LEU B 8 REMARK 465 THR B 9 REMARK 465 PHE B 10 REMARK 465 ALA B 11 REMARK 465 SER B 12 REMARK 465 LEU B 13 REMARK 465 MET B 14 REMARK 465 PHE B 15 REMARK 465 SER B 16 REMARK 465 ALA B 17 REMARK 465 GLY B 18 REMARK 465 SER B 19 REMARK 465 ALA B 20 REMARK 465 VAL B 21 REMARK 465 ALA B 22 REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 LYS C 3 REMARK 465 SER C 4 REMARK 465 LEU C 5 REMARK 465 LEU C 6 REMARK 465 GLY C 7 REMARK 465 LEU C 8 REMARK 465 THR C 9 REMARK 465 PHE C 10 REMARK 465 ALA C 11 REMARK 465 SER C 12 REMARK 465 LEU C 13 REMARK 465 MET C 14 REMARK 465 PHE C 15 REMARK 465 SER C 16 REMARK 465 ALA C 17 REMARK 465 GLY C 18 REMARK 465 SER C 19 REMARK 465 ALA C 20 REMARK 465 VAL C 21 REMARK 465 ALA C 22 REMARK 465 MET D 1 REMARK 465 LYS D 2 REMARK 465 LYS D 3 REMARK 465 SER D 4 REMARK 465 LEU D 5 REMARK 465 LEU D 6 REMARK 465 GLY D 7 REMARK 465 LEU D 8 REMARK 465 THR D 9 REMARK 465 PHE D 10 REMARK 465 ALA D 11 REMARK 465 SER D 12 REMARK 465 LEU D 13 REMARK 465 MET D 14 REMARK 465 PHE D 15 REMARK 465 SER D 16 REMARK 465 ALA D 17 REMARK 465 GLY D 18 REMARK 465 SER D 19 REMARK 465 ALA D 20 REMARK 465 VAL D 21 REMARK 465 ALA D 22 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 33 58.57 -107.18 REMARK 500 ASN A 65 73.17 -118.36 REMARK 500 PHE A 96 -95.96 -132.76 REMARK 500 HIS B 33 60.92 -108.80 REMARK 500 LEU B 43 9.80 59.66 REMARK 500 HIS B 84 106.87 -162.16 REMARK 500 PHE B 96 -98.77 -134.62 REMARK 500 THR B 170 109.84 -44.06 REMARK 500 HIS C 33 60.65 -108.41 REMARK 500 LEU C 43 14.79 56.21 REMARK 500 ASN C 65 78.67 -115.96 REMARK 500 HIS C 84 101.25 -160.97 REMARK 500 PHE C 96 -95.62 -133.17 REMARK 500 HIS D 33 57.70 -107.81 REMARK 500 ASN D 65 75.57 -118.51 REMARK 500 HIS D 84 104.12 -164.12 REMARK 500 PHE D 96 -100.03 -133.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 THE AUTHOR STATES THAT THE LIGAND 8PP PRESENT REMARK 600 IN THE COORDINATES IS A LIGAND THAT HAS REMARK 600 NATURALLY OCCURED AND WAS NOT ADDED DURING REMARK 600 CRYSTALLIZATION. THE STRUCTURE OF THE 8PP REMARK 600 LIGAND IS A PREDICTION. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8PP A 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8PP B 321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8PP C 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8PP D 323 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-T792 RELATED DB: TARGETDB DBREF 1Y0G A 1 191 UNP P0A8X2 YCEI_ECOLI 1 191 DBREF 1Y0G B 1 191 UNP P0A8X2 YCEI_ECOLI 1 191 DBREF 1Y0G C 1 191 UNP P0A8X2 YCEI_ECOLI 1 191 DBREF 1Y0G D 1 191 UNP P0A8X2 YCEI_ECOLI 1 191 SEQRES 1 A 191 MET LYS LYS SER LEU LEU GLY LEU THR PHE ALA SER LEU SEQRES 2 A 191 MET PHE SER ALA GLY SER ALA VAL ALA ALA ASP TYR LYS SEQRES 3 A 191 ILE ASP LYS GLU GLY GLN HIS ALA PHE VAL ASN PHE ARG SEQRES 4 A 191 ILE GLN HIS LEU GLY TYR SER TRP LEU TYR GLY THR PHE SEQRES 5 A 191 LYS ASP PHE ASP GLY THR PHE THR PHE ASP GLU LYS ASN SEQRES 6 A 191 PRO ALA ALA ASP LYS VAL ASN VAL THR ILE ASN THR THR SEQRES 7 A 191 SER VAL ASP THR ASN HIS ALA GLU ARG ASP LYS HIS LEU SEQRES 8 A 191 ARG SER ALA ASP PHE LEU ASN THR ALA LYS TYR PRO GLN SEQRES 9 A 191 ALA THR PHE THR SER THR SER VAL LYS LYS ASP GLY ASP SEQRES 10 A 191 GLU LEU ASP ILE THR GLY ASP LEU THR LEU ASN GLY VAL SEQRES 11 A 191 THR LYS PRO VAL THR LEU GLU ALA LYS LEU ILE GLY GLN SEQRES 12 A 191 GLY ASP ASP PRO TRP GLY GLY LYS ARG ALA GLY PHE GLU SEQRES 13 A 191 ALA GLU GLY LYS ILE LYS LEU LYS ASP PHE ASN ILE LYS SEQRES 14 A 191 THR ASP LEU GLY PRO ALA SER GLN GLU VAL ASP LEU ILE SEQRES 15 A 191 ILE SER VAL GLU GLY VAL GLN GLN LYS SEQRES 1 B 191 MET LYS LYS SER LEU LEU GLY LEU THR PHE ALA SER LEU SEQRES 2 B 191 MET PHE SER ALA GLY SER ALA VAL ALA ALA ASP TYR LYS SEQRES 3 B 191 ILE ASP LYS GLU GLY GLN HIS ALA PHE VAL ASN PHE ARG SEQRES 4 B 191 ILE GLN HIS LEU GLY TYR SER TRP LEU TYR GLY THR PHE SEQRES 5 B 191 LYS ASP PHE ASP GLY THR PHE THR PHE ASP GLU LYS ASN SEQRES 6 B 191 PRO ALA ALA ASP LYS VAL ASN VAL THR ILE ASN THR THR SEQRES 7 B 191 SER VAL ASP THR ASN HIS ALA GLU ARG ASP LYS HIS LEU SEQRES 8 B 191 ARG SER ALA ASP PHE LEU ASN THR ALA LYS TYR PRO GLN SEQRES 9 B 191 ALA THR PHE THR SER THR SER VAL LYS LYS ASP GLY ASP SEQRES 10 B 191 GLU LEU ASP ILE THR GLY ASP LEU THR LEU ASN GLY VAL SEQRES 11 B 191 THR LYS PRO VAL THR LEU GLU ALA LYS LEU ILE GLY GLN SEQRES 12 B 191 GLY ASP ASP PRO TRP GLY GLY LYS ARG ALA GLY PHE GLU SEQRES 13 B 191 ALA GLU GLY LYS ILE LYS LEU LYS ASP PHE ASN ILE LYS SEQRES 14 B 191 THR ASP LEU GLY PRO ALA SER GLN GLU VAL ASP LEU ILE SEQRES 15 B 191 ILE SER VAL GLU GLY VAL GLN GLN LYS SEQRES 1 C 191 MET LYS LYS SER LEU LEU GLY LEU THR PHE ALA SER LEU SEQRES 2 C 191 MET PHE SER ALA GLY SER ALA VAL ALA ALA ASP TYR LYS SEQRES 3 C 191 ILE ASP LYS GLU GLY GLN HIS ALA PHE VAL ASN PHE ARG SEQRES 4 C 191 ILE GLN HIS LEU GLY TYR SER TRP LEU TYR GLY THR PHE SEQRES 5 C 191 LYS ASP PHE ASP GLY THR PHE THR PHE ASP GLU LYS ASN SEQRES 6 C 191 PRO ALA ALA ASP LYS VAL ASN VAL THR ILE ASN THR THR SEQRES 7 C 191 SER VAL ASP THR ASN HIS ALA GLU ARG ASP LYS HIS LEU SEQRES 8 C 191 ARG SER ALA ASP PHE LEU ASN THR ALA LYS TYR PRO GLN SEQRES 9 C 191 ALA THR PHE THR SER THR SER VAL LYS LYS ASP GLY ASP SEQRES 10 C 191 GLU LEU ASP ILE THR GLY ASP LEU THR LEU ASN GLY VAL SEQRES 11 C 191 THR LYS PRO VAL THR LEU GLU ALA LYS LEU ILE GLY GLN SEQRES 12 C 191 GLY ASP ASP PRO TRP GLY GLY LYS ARG ALA GLY PHE GLU SEQRES 13 C 191 ALA GLU GLY LYS ILE LYS LEU LYS ASP PHE ASN ILE LYS SEQRES 14 C 191 THR ASP LEU GLY PRO ALA SER GLN GLU VAL ASP LEU ILE SEQRES 15 C 191 ILE SER VAL GLU GLY VAL GLN GLN LYS SEQRES 1 D 191 MET LYS LYS SER LEU LEU GLY LEU THR PHE ALA SER LEU SEQRES 2 D 191 MET PHE SER ALA GLY SER ALA VAL ALA ALA ASP TYR LYS SEQRES 3 D 191 ILE ASP LYS GLU GLY GLN HIS ALA PHE VAL ASN PHE ARG SEQRES 4 D 191 ILE GLN HIS LEU GLY TYR SER TRP LEU TYR GLY THR PHE SEQRES 5 D 191 LYS ASP PHE ASP GLY THR PHE THR PHE ASP GLU LYS ASN SEQRES 6 D 191 PRO ALA ALA ASP LYS VAL ASN VAL THR ILE ASN THR THR SEQRES 7 D 191 SER VAL ASP THR ASN HIS ALA GLU ARG ASP LYS HIS LEU SEQRES 8 D 191 ARG SER ALA ASP PHE LEU ASN THR ALA LYS TYR PRO GLN SEQRES 9 D 191 ALA THR PHE THR SER THR SER VAL LYS LYS ASP GLY ASP SEQRES 10 D 191 GLU LEU ASP ILE THR GLY ASP LEU THR LEU ASN GLY VAL SEQRES 11 D 191 THR LYS PRO VAL THR LEU GLU ALA LYS LEU ILE GLY GLN SEQRES 12 D 191 GLY ASP ASP PRO TRP GLY GLY LYS ARG ALA GLY PHE GLU SEQRES 13 D 191 ALA GLU GLY LYS ILE LYS LEU LYS ASP PHE ASN ILE LYS SEQRES 14 D 191 THR ASP LEU GLY PRO ALA SER GLN GLU VAL ASP LEU ILE SEQRES 15 D 191 ILE SER VAL GLU GLY VAL GLN GLN LYS HET 8PP A 320 47 HET 8PP B 321 47 HET 8PP C 322 47 HET 8PP D 323 47 HETNAM 8PP 2-[(2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31- HETNAM 2 8PP OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30- HETNAM 3 8PP OCTAENYL]PHENOL FORMUL 5 8PP 4(C46 H70 O) FORMUL 9 HOH *316(H2 O) HELIX 1 1 ASN A 65 ASP A 69 5 5 HELIX 2 2 HIS A 84 SER A 93 1 10 HELIX 3 3 LYS A 164 ASN A 167 5 4 HELIX 4 4 GLY A 173 SER A 176 5 4 HELIX 5 5 ASN B 65 ASP B 69 5 5 HELIX 6 6 HIS B 84 SER B 93 1 10 HELIX 7 7 LYS B 164 ASN B 167 5 4 HELIX 8 8 GLY B 173 SER B 176 5 4 HELIX 9 9 ASN C 65 ASP C 69 5 5 HELIX 10 10 HIS C 84 SER C 93 1 10 HELIX 11 11 LYS C 164 ASN C 167 5 4 HELIX 12 12 ASN D 65 ASP D 69 5 5 HELIX 13 13 HIS D 84 SER D 93 1 10 HELIX 14 14 LYS D 164 ASN D 167 5 4 SHEET 1 A12 VAL A 80 ASP A 81 0 SHEET 2 A12 SER A 46 PHE A 52 -1 N THR A 51 O ASP A 81 SHEET 3 A12 ALA A 34 HIS A 42 -1 N ILE A 40 O LEU A 48 SHEET 4 A12 GLU A 178 GLN A 189 -1 O SER A 184 N PHE A 35 SHEET 5 A12 LYS A 151 LYS A 162 -1 N GLY A 159 O LEU A 181 SHEET 6 A12 VAL A 130 ASP A 145 -1 N GLY A 142 O GLY A 154 SHEET 7 A12 GLU A 118 LEU A 127 -1 N LEU A 119 O ALA A 138 SHEET 8 A12 GLN A 104 ASP A 115 -1 N THR A 106 O THR A 126 SHEET 9 A12 LYS A 70 ASN A 76 -1 N ILE A 75 O ALA A 105 SHEET 10 A12 PHE A 55 THR A 60 -1 N ASP A 56 O THR A 74 SHEET 11 A12 ASP A 24 ILE A 27 -1 N ILE A 27 O GLY A 57 SHEET 12 A12 GLU A 178 GLN A 189 -1 O VAL A 188 N LYS A 26 SHEET 1 B12 VAL B 80 ASP B 81 0 SHEET 2 B12 SER B 46 PHE B 52 -1 N THR B 51 O ASP B 81 SHEET 3 B12 ALA B 34 HIS B 42 -1 N ILE B 40 O LEU B 48 SHEET 4 B12 GLU B 178 GLN B 189 -1 O SER B 184 N PHE B 35 SHEET 5 B12 LYS B 151 LYS B 162 -1 N LYS B 151 O GLN B 189 SHEET 6 B12 VAL B 130 ASP B 145 -1 N GLY B 144 O ARG B 152 SHEET 7 B12 GLU B 118 LEU B 127 -1 N LEU B 119 O ALA B 138 SHEET 8 B12 GLN B 104 ASP B 115 -1 N THR B 110 O THR B 122 SHEET 9 B12 LYS B 70 ASN B 76 -1 N ILE B 75 O ALA B 105 SHEET 10 B12 PHE B 55 THR B 60 -1 N THR B 58 O ASN B 72 SHEET 11 B12 ASP B 24 ILE B 27 -1 N ILE B 27 O GLY B 57 SHEET 12 B12 GLU B 178 GLN B 189 -1 O VAL B 188 N LYS B 26 SHEET 1 C12 VAL C 80 ASP C 81 0 SHEET 2 C12 SER C 46 PHE C 52 -1 N THR C 51 O ASP C 81 SHEET 3 C12 ALA C 34 HIS C 42 -1 N ILE C 40 O LEU C 48 SHEET 4 C12 GLU C 178 GLN C 189 -1 O SER C 184 N PHE C 35 SHEET 5 C12 LYS C 151 LYS C 162 -1 N GLY C 159 O LEU C 181 SHEET 6 C12 VAL C 130 ASP C 145 -1 N GLY C 144 O ARG C 152 SHEET 7 C12 LEU C 119 LEU C 127 -1 N ILE C 121 O LEU C 136 SHEET 8 C12 GLN C 104 LYS C 114 -1 N SER C 111 O THR C 122 SHEET 9 C12 LYS C 70 ASN C 76 -1 N ILE C 75 O ALA C 105 SHEET 10 C12 PHE C 55 THR C 60 -1 N ASP C 56 O THR C 74 SHEET 11 C12 ASP C 24 ILE C 27 -1 N ILE C 27 O GLY C 57 SHEET 12 C12 GLU C 178 GLN C 189 -1 O VAL C 188 N LYS C 26 SHEET 1 D12 VAL D 80 ASP D 81 0 SHEET 2 D12 SER D 46 PHE D 52 -1 N THR D 51 O ASP D 81 SHEET 3 D12 ALA D 34 HIS D 42 -1 N PHE D 38 O GLY D 50 SHEET 4 D12 GLU D 178 GLN D 189 -1 O SER D 184 N PHE D 35 SHEET 5 D12 LYS D 151 LYS D 162 -1 N ALA D 157 O ILE D 183 SHEET 6 D12 VAL D 130 ASP D 145 -1 N GLY D 144 O ARG D 152 SHEET 7 D12 GLU D 118 LEU D 127 -1 N LEU D 119 O ALA D 138 SHEET 8 D12 GLN D 104 ASP D 115 -1 N SER D 111 O THR D 122 SHEET 9 D12 ASN D 72 ASN D 76 -1 N ILE D 75 O ALA D 105 SHEET 10 D12 PHE D 55 THR D 60 -1 N ASP D 56 O THR D 74 SHEET 11 D12 ASP D 24 ILE D 27 -1 N ILE D 27 O GLY D 57 SHEET 12 D12 GLU D 178 GLN D 189 -1 O VAL D 188 N LYS D 26 SITE 1 AC1 21 VAL A 36 ILE A 40 GLN A 41 HIS A 42 SITE 2 AC1 21 LEU A 48 PHE A 52 THR A 60 LYS A 70 SITE 3 AC1 21 VAL A 71 VAL A 73 ILE A 75 ARG A 87 SITE 4 AC1 21 PHE A 96 ALA A 105 PHE A 155 ILE A 161 SITE 5 AC1 21 LEU A 163 LEU A 172 ILE A 183 VAL A 185 SITE 6 AC1 21 HIS B 33 SITE 1 AC2 24 HIS A 33 VAL B 36 PHE B 38 ILE B 40 SITE 2 AC2 24 GLN B 41 HIS B 42 LEU B 48 PHE B 52 SITE 3 AC2 24 THR B 60 PHE B 61 LYS B 70 VAL B 71 SITE 4 AC2 24 VAL B 73 ILE B 75 ARG B 87 LEU B 91 SITE 5 AC2 24 ALA B 105 PHE B 107 PHE B 155 ILE B 161 SITE 6 AC2 24 LEU B 163 ILE B 183 VAL B 185 GLY C 149 SITE 1 AC3 21 VAL C 36 PHE C 38 ILE C 40 HIS C 42 SITE 2 AC3 21 LEU C 48 PHE C 52 THR C 60 LYS C 70 SITE 3 AC3 21 VAL C 71 VAL C 73 ILE C 75 ARG C 87 SITE 4 AC3 21 LEU C 91 ALA C 105 PHE C 107 PHE C 155 SITE 5 AC3 21 ILE C 161 LEU C 163 ILE C 183 VAL C 185 SITE 6 AC3 21 HIS D 33 SITE 1 AC4 24 HIS C 33 VAL D 36 PHE D 38 ILE D 40 SITE 2 AC4 24 HIS D 42 PHE D 52 THR D 60 PHE D 61 SITE 3 AC4 24 ASP D 69 LYS D 70 VAL D 71 VAL D 73 SITE 4 AC4 24 ILE D 75 LEU D 91 ALA D 105 PHE D 107 SITE 5 AC4 24 LEU D 136 PHE D 155 ILE D 161 LEU D 163 SITE 6 AC4 24 LEU D 172 ILE D 183 VAL D 185 HOH D 347 CRYST1 188.170 41.930 130.250 90.00 126.33 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005314 0.000000 0.003908 0.00000 SCALE2 0.000000 0.023849 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009530 0.00000