HEADER ISOMERASE 15-NOV-04 1Y0O TITLE CRYSTAL STRUCTURE OF REDUCED ATFKBP13 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 3; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 SYNONYM: ATFKBP13, PPIASE, ROTAMASE, FK506 BINDING PROTEIN 1; COMPND 5 EC: 5.2.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: ATFKBP13; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)LYS-S; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-KG KEYWDS REDUCED ATFKBP13, FK-506 BINDING PROTEIN, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.GAYATHRI,K.SWAMINATHAN REVDAT 4 25-OCT-23 1Y0O 1 REMARK REVDAT 3 13-JUL-11 1Y0O 1 VERSN REVDAT 2 24-FEB-09 1Y0O 1 VERSN REVDAT 1 01-NOV-05 1Y0O 0 JRNL AUTH G.GOPALAN,K.SWAMINTHAN,S.LUAN,K.P.BATTAILE JRNL TITL CRYSTAL STRUCTURE OF REDUCED ATFKBP13 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.GOPALAN,Z.HE,Y.BALMER,P.ROMANO,R.GUPTA,A.HEROUX, REMARK 1 AUTH 2 B.B.BUCHANAN,K.SWAMINATHAN,S.LUAN REMARK 1 TITL STRUCTURAL ANALYSIS UNCOVERS A ROLE FOR REDOX IN REGULATING REMARK 1 TITL 2 FKBP13, AN IMMUNOPHILIN OF THE CHLOROPLAST THYLAKOID LUMEN REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 101 13945 2004 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 15356344 REMARK 1 DOI 10.1073/PNAS.0405240101 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 327978.060 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 84.1 REMARK 3 NUMBER OF REFLECTIONS : 45249 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4568 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 51.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4167 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 462 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4630 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 313 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : 2.51000 REMARK 3 B33 (A**2) : -2.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.13 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.610 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.630 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.530 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.830 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.49 REMARK 3 BSOL : 87.65 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Y0O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1000030967. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-AUG-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97879 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54269 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : -3.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.62100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: 1U79 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.71200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.71200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.44900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.87650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.44900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.87650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.71200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.44900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.87650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.71200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.44900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 62.87650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -111.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 -1.000000 0.000000 0.000000 133.34700 REMARK 350 BIOMT2 1 0.000000 -1.000000 0.000000 62.87650 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 -59.71200 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 133.34700 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -62.87650 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 59.71200 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, E REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 44.44900 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 -62.87650 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 44.44900 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 62.87650 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 GLU B 201 REMARK 465 THR B 202 REMARK 465 THR B 203 REMARK 465 SER B 204 REMARK 465 GLU C 401 REMARK 465 THR C 402 REMARK 465 THR C 403 REMARK 465 SER C 404 REMARK 465 GLU D 601 REMARK 465 THR D 602 REMARK 465 THR D 603 REMARK 465 SER D 604 REMARK 465 GLU E 801 REMARK 465 THR E 802 REMARK 465 THR E 803 REMARK 465 SER E 804 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER C 450 O ARG C 453 2.04 REMARK 500 OE2 GLU A 124 OE1 GLU D 642 2.09 REMARK 500 OH TYR A 51 OE1 GLU D 642 2.11 REMARK 500 OE2 GLU B 265 O HOH B 386 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N ARG C 453 NH1 ARG C 453 3655 1.70 REMARK 500 NZ LYS C 445 NZ LYS C 445 3655 1.98 REMARK 500 O SER C 449 NH1 ARG C 453 3655 2.03 REMARK 500 O SER C 449 CZ ARG C 453 3655 2.03 REMARK 500 CG ARG C 453 NE ARG C 453 3655 2.09 REMARK 500 O SER C 449 NH2 ARG C 453 3655 2.11 REMARK 500 NH2 ARG A 92 OE2 GLU C 524 5545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG C 453 CB ARG C 453 CG 0.220 REMARK 500 ARG C 453 CG ARG C 453 CD 0.233 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 453 CA - CB - CG ANGL. DEV. = 16.4 DEGREES REMARK 500 ARG C 453 CB - CG - CD ANGL. DEV. = 21.1 DEGREES REMARK 500 ARG C 453 CD - NE - CZ ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG C 453 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG C 453 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG C 453 N - CA - C ANGL. DEV. = -24.6 DEGREES REMARK 500 ARG C 460 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG C 460 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 98 -114.01 -132.44 REMARK 500 GLU B 206 -129.57 -48.00 REMARK 500 PHE B 207 -105.97 76.95 REMARK 500 LYS B 229 134.62 -38.18 REMARK 500 ASP B 248 157.14 179.15 REMARK 500 SER B 277 -168.63 -172.18 REMARK 500 ALA B 298 -108.46 -129.70 REMARK 500 LYS B 307 58.04 -157.10 REMARK 500 SER C 477 -164.52 -176.31 REMARK 500 ALA C 498 -110.61 -129.23 REMARK 500 LYS C 528 -40.38 112.56 REMARK 500 GLU D 606 131.70 61.09 REMARK 500 SER D 677 -162.80 -169.51 REMARK 500 ALA D 698 -111.16 -132.67 REMARK 500 LYS D 707 106.34 -172.46 REMARK 500 GLU E 806 74.37 63.02 REMARK 500 SER E 877 -169.64 -170.23 REMARK 500 ALA E 898 -112.08 -130.42 REMARK 500 LYS E 907 59.51 -158.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U79 RELATED DB: PDB REMARK 900 STRUCTURE OF OXIDIZED ATFKBP13 DBREF 1Y0O A 1 129 UNP Q9SCY2 FKB13_ARATH 80 208 DBREF 1Y0O B 201 329 UNP Q9SCY2 FKB13_ARATH 80 208 DBREF 1Y0O C 401 529 UNP Q9SCY2 FKB13_ARATH 80 208 DBREF 1Y0O D 601 729 UNP Q9SCY2 FKB13_ARATH 80 208 DBREF 1Y0O E 801 929 UNP Q9SCY2 FKB13_ARATH 80 208 SEQRES 1 A 129 GLU THR THR SER CYS GLU PHE SER VAL SER PRO SER GLY SEQRES 2 A 129 LEU ALA PHE CYS ASP LYS VAL VAL GLY TYR GLY PRO GLU SEQRES 3 A 129 ALA VAL LYS GLY GLN LEU ILE LYS ALA HIS TYR VAL GLY SEQRES 4 A 129 LYS LEU GLU ASN GLY LYS VAL PHE ASP SER SER TYR ASN SEQRES 5 A 129 ARG GLY LYS PRO LEU THR PHE ARG ILE GLY VAL GLY GLU SEQRES 6 A 129 VAL ILE LYS GLY TRP ASP GLN GLY ILE LEU GLY SER ASP SEQRES 7 A 129 GLY ILE PRO PRO MET LEU THR GLY GLY LYS ARG THR LEU SEQRES 8 A 129 ARG ILE PRO PRO GLU LEU ALA TYR GLY ASP ARG GLY ALA SEQRES 9 A 129 GLY CYS LYS GLY GLY SER CYS LEU ILE PRO PRO ALA SER SEQRES 10 A 129 VAL LEU LEU PHE ASP ILE GLU TYR ILE GLY LYS ALA SEQRES 1 B 129 GLU THR THR SER CYS GLU PHE SER VAL SER PRO SER GLY SEQRES 2 B 129 LEU ALA PHE CYS ASP LYS VAL VAL GLY TYR GLY PRO GLU SEQRES 3 B 129 ALA VAL LYS GLY GLN LEU ILE LYS ALA HIS TYR VAL GLY SEQRES 4 B 129 LYS LEU GLU ASN GLY LYS VAL PHE ASP SER SER TYR ASN SEQRES 5 B 129 ARG GLY LYS PRO LEU THR PHE ARG ILE GLY VAL GLY GLU SEQRES 6 B 129 VAL ILE LYS GLY TRP ASP GLN GLY ILE LEU GLY SER ASP SEQRES 7 B 129 GLY ILE PRO PRO MET LEU THR GLY GLY LYS ARG THR LEU SEQRES 8 B 129 ARG ILE PRO PRO GLU LEU ALA TYR GLY ASP ARG GLY ALA SEQRES 9 B 129 GLY CYS LYS GLY GLY SER CYS LEU ILE PRO PRO ALA SER SEQRES 10 B 129 VAL LEU LEU PHE ASP ILE GLU TYR ILE GLY LYS ALA SEQRES 1 C 129 GLU THR THR SER CYS GLU PHE SER VAL SER PRO SER GLY SEQRES 2 C 129 LEU ALA PHE CYS ASP LYS VAL VAL GLY TYR GLY PRO GLU SEQRES 3 C 129 ALA VAL LYS GLY GLN LEU ILE LYS ALA HIS TYR VAL GLY SEQRES 4 C 129 LYS LEU GLU ASN GLY LYS VAL PHE ASP SER SER TYR ASN SEQRES 5 C 129 ARG GLY LYS PRO LEU THR PHE ARG ILE GLY VAL GLY GLU SEQRES 6 C 129 VAL ILE LYS GLY TRP ASP GLN GLY ILE LEU GLY SER ASP SEQRES 7 C 129 GLY ILE PRO PRO MET LEU THR GLY GLY LYS ARG THR LEU SEQRES 8 C 129 ARG ILE PRO PRO GLU LEU ALA TYR GLY ASP ARG GLY ALA SEQRES 9 C 129 GLY CYS LYS GLY GLY SER CYS LEU ILE PRO PRO ALA SER SEQRES 10 C 129 VAL LEU LEU PHE ASP ILE GLU TYR ILE GLY LYS ALA SEQRES 1 D 129 GLU THR THR SER CYS GLU PHE SER VAL SER PRO SER GLY SEQRES 2 D 129 LEU ALA PHE CYS ASP LYS VAL VAL GLY TYR GLY PRO GLU SEQRES 3 D 129 ALA VAL LYS GLY GLN LEU ILE LYS ALA HIS TYR VAL GLY SEQRES 4 D 129 LYS LEU GLU ASN GLY LYS VAL PHE ASP SER SER TYR ASN SEQRES 5 D 129 ARG GLY LYS PRO LEU THR PHE ARG ILE GLY VAL GLY GLU SEQRES 6 D 129 VAL ILE LYS GLY TRP ASP GLN GLY ILE LEU GLY SER ASP SEQRES 7 D 129 GLY ILE PRO PRO MET LEU THR GLY GLY LYS ARG THR LEU SEQRES 8 D 129 ARG ILE PRO PRO GLU LEU ALA TYR GLY ASP ARG GLY ALA SEQRES 9 D 129 GLY CYS LYS GLY GLY SER CYS LEU ILE PRO PRO ALA SER SEQRES 10 D 129 VAL LEU LEU PHE ASP ILE GLU TYR ILE GLY LYS ALA SEQRES 1 E 129 GLU THR THR SER CYS GLU PHE SER VAL SER PRO SER GLY SEQRES 2 E 129 LEU ALA PHE CYS ASP LYS VAL VAL GLY TYR GLY PRO GLU SEQRES 3 E 129 ALA VAL LYS GLY GLN LEU ILE LYS ALA HIS TYR VAL GLY SEQRES 4 E 129 LYS LEU GLU ASN GLY LYS VAL PHE ASP SER SER TYR ASN SEQRES 5 E 129 ARG GLY LYS PRO LEU THR PHE ARG ILE GLY VAL GLY GLU SEQRES 6 E 129 VAL ILE LYS GLY TRP ASP GLN GLY ILE LEU GLY SER ASP SEQRES 7 E 129 GLY ILE PRO PRO MET LEU THR GLY GLY LYS ARG THR LEU SEQRES 8 E 129 ARG ILE PRO PRO GLU LEU ALA TYR GLY ASP ARG GLY ALA SEQRES 9 E 129 GLY CYS LYS GLY GLY SER CYS LEU ILE PRO PRO ALA SER SEQRES 10 E 129 VAL LEU LEU PHE ASP ILE GLU TYR ILE GLY LYS ALA FORMUL 6 HOH *313(H2 O) HELIX 1 1 ILE A 67 GLY A 76 1 10 HELIX 2 2 PRO A 94 ALA A 98 5 5 HELIX 3 3 ILE B 267 GLY B 276 1 10 HELIX 4 4 PRO B 294 ALA B 298 5 5 HELIX 5 5 ILE C 467 GLY C 476 1 10 HELIX 6 6 PRO C 494 ALA C 498 5 5 HELIX 7 7 SER D 650 GLY D 654 1 5 HELIX 8 8 ILE D 667 GLY D 676 1 10 HELIX 9 9 PRO D 694 ALA D 698 5 5 HELIX 10 10 SER E 850 GLY E 854 1 5 HELIX 11 11 ILE E 867 GLY E 876 1 10 HELIX 12 12 PRO E 894 ALA E 898 5 5 SHEET 1 A 6 SER A 8 VAL A 9 0 SHEET 2 A 6 ALA A 15 VAL A 20 -1 O PHE A 16 N SER A 8 SHEET 3 A 6 LYS A 88 ILE A 93 -1 O ARG A 92 N ALA A 15 SHEET 4 A 6 LEU A 119 LYS A 128 -1 O ILE A 123 N ARG A 89 SHEET 5 A 6 LEU A 32 LEU A 41 -1 N LYS A 34 O GLY A 127 SHEET 6 A 6 VAL A 46 SER A 49 -1 O ASP A 48 N GLY A 39 SHEET 1 B 6 SER A 8 VAL A 9 0 SHEET 2 B 6 ALA A 15 VAL A 20 -1 O PHE A 16 N SER A 8 SHEET 3 B 6 LYS A 88 ILE A 93 -1 O ARG A 92 N ALA A 15 SHEET 4 B 6 LEU A 119 LYS A 128 -1 O ILE A 123 N ARG A 89 SHEET 5 B 6 LEU A 32 LEU A 41 -1 N LYS A 34 O GLY A 127 SHEET 6 B 6 LEU A 57 ARG A 60 -1 O LEU A 57 N ALA A 35 SHEET 1 C 2 ALA A 104 LYS A 107 0 SHEET 2 C 2 SER A 110 ILE A 113 -1 O SER A 110 N LYS A 107 SHEET 1 D 6 SER B 208 VAL B 209 0 SHEET 2 D 6 ALA B 215 VAL B 220 -1 O PHE B 216 N SER B 208 SHEET 3 D 6 LYS B 288 ILE B 293 -1 O LYS B 288 N VAL B 220 SHEET 4 D 6 LEU B 319 LYS B 328 -1 O ILE B 323 N ARG B 289 SHEET 5 D 6 LEU B 232 LYS B 240 -1 N LYS B 240 O LEU B 320 SHEET 6 D 6 VAL B 246 SER B 249 -1 O ASP B 248 N GLY B 239 SHEET 1 E 6 SER B 208 VAL B 209 0 SHEET 2 E 6 ALA B 215 VAL B 220 -1 O PHE B 216 N SER B 208 SHEET 3 E 6 LYS B 288 ILE B 293 -1 O LYS B 288 N VAL B 220 SHEET 4 E 6 LEU B 319 LYS B 328 -1 O ILE B 323 N ARG B 289 SHEET 5 E 6 LEU B 232 LYS B 240 -1 N LYS B 240 O LEU B 320 SHEET 6 E 6 LEU B 257 ARG B 260 -1 O PHE B 259 N ILE B 233 SHEET 1 F 2 ALA B 304 CYS B 306 0 SHEET 2 F 2 CYS B 311 ILE B 313 -1 O ILE B 313 N ALA B 304 SHEET 1 G 6 SER C 408 VAL C 409 0 SHEET 2 G 6 ALA C 415 VAL C 420 -1 O PHE C 416 N SER C 408 SHEET 3 G 6 LYS C 488 ILE C 493 -1 O ARG C 492 N ALA C 415 SHEET 4 G 6 LEU C 519 GLY C 527 -1 O ILE C 523 N ARG C 489 SHEET 5 G 6 LEU C 432 LEU C 441 -1 N HIS C 436 O GLU C 524 SHEET 6 G 6 VAL C 446 SER C 449 -1 O ASP C 448 N GLY C 439 SHEET 1 H 6 SER C 408 VAL C 409 0 SHEET 2 H 6 ALA C 415 VAL C 420 -1 O PHE C 416 N SER C 408 SHEET 3 H 6 LYS C 488 ILE C 493 -1 O ARG C 492 N ALA C 415 SHEET 4 H 6 LEU C 519 GLY C 527 -1 O ILE C 523 N ARG C 489 SHEET 5 H 6 LEU C 432 LEU C 441 -1 N HIS C 436 O GLU C 524 SHEET 6 H 6 LEU C 457 ARG C 460 -1 O PHE C 459 N ILE C 433 SHEET 1 I 6 SER D 608 VAL D 609 0 SHEET 2 I 6 ALA D 615 VAL D 620 -1 O PHE D 616 N SER D 608 SHEET 3 I 6 LYS D 688 ILE D 693 -1 O THR D 690 N CYS D 617 SHEET 4 I 6 LEU D 719 LYS D 728 -1 O LEU D 719 N ILE D 693 SHEET 5 I 6 LEU D 632 LYS D 640 -1 N LYS D 640 O LEU D 720 SHEET 6 I 6 VAL D 646 SER D 649 -1 O ASP D 648 N GLY D 639 SHEET 1 J 6 SER D 608 VAL D 609 0 SHEET 2 J 6 ALA D 615 VAL D 620 -1 O PHE D 616 N SER D 608 SHEET 3 J 6 LYS D 688 ILE D 693 -1 O THR D 690 N CYS D 617 SHEET 4 J 6 LEU D 719 LYS D 728 -1 O LEU D 719 N ILE D 693 SHEET 5 J 6 LEU D 632 LYS D 640 -1 N LYS D 640 O LEU D 720 SHEET 6 J 6 LEU D 657 ARG D 660 -1 O PHE D 659 N ILE D 633 SHEET 1 K 2 ALA D 704 LYS D 707 0 SHEET 2 K 2 SER D 710 ILE D 713 -1 O ILE D 713 N ALA D 704 SHEET 1 L 6 SER E 808 VAL E 809 0 SHEET 2 L 6 ALA E 815 VAL E 820 -1 O PHE E 816 N SER E 808 SHEET 3 L 6 LYS E 888 ILE E 893 -1 O LYS E 888 N VAL E 820 SHEET 4 L 6 LEU E 919 LYS E 928 -1 O LEU E 919 N ILE E 893 SHEET 5 L 6 LEU E 832 LEU E 841 -1 N LYS E 840 O LEU E 920 SHEET 6 L 6 VAL E 846 SER E 849 -1 O ASP E 848 N GLY E 839 SHEET 1 M 6 SER E 808 VAL E 809 0 SHEET 2 M 6 ALA E 815 VAL E 820 -1 O PHE E 816 N SER E 808 SHEET 3 M 6 LYS E 888 ILE E 893 -1 O LYS E 888 N VAL E 820 SHEET 4 M 6 LEU E 919 LYS E 928 -1 O LEU E 919 N ILE E 893 SHEET 5 M 6 LEU E 832 LEU E 841 -1 N LYS E 840 O LEU E 920 SHEET 6 M 6 LEU E 857 ARG E 860 -1 O PHE E 859 N ILE E 833 SSBOND 1 CYS A 106 CYS A 111 1555 1555 2.63 SSBOND 2 CYS B 306 CYS B 311 1555 1555 2.82 SSBOND 3 CYS C 506 CYS C 511 1555 1555 2.86 SSBOND 4 CYS D 706 CYS D 711 1555 1555 2.77 SSBOND 5 CYS E 906 CYS E 911 1555 1555 2.97 CRYST1 88.898 125.753 119.424 90.00 90.00 90.00 C 2 2 21 40 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011249 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007952 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008374 0.00000