HEADER HORMONE/GROWTH FACTOR RECEPTOR 16-NOV-04 1Y0X TITLE THYROXINE-THYROID HORMONE RECEPTOR INTERACTIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYROID HORMONE RECEPTOR BETA-1; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN (RESIDUES 202-461); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: THRB, ERBA2, NR1A2, THR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-TRBE202 KEYWDS HORMONE/GROWTH FACTOR RECEPTOR, HORMONE-GROWTH FACTOR RECEPTOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.SANDLER,P.WEBB,J.W.APRILETTI,B.R.HUBER,M.TOGASHI,S.T.CUNHA LIMA, AUTHOR 2 S.JURIC,S.NILSSON,R.WAGNER,R.J.FLETTERICK,J.D.BAXTER REVDAT 7 03-APR-24 1Y0X 1 REMARK REVDAT 6 15-NOV-23 1Y0X 1 REMARK SEQADV LINK ATOM REVDAT 5 11-OCT-17 1Y0X 1 REMARK REVDAT 4 13-JUL-11 1Y0X 1 VERSN REVDAT 3 24-FEB-09 1Y0X 1 VERSN REVDAT 2 13-DEC-05 1Y0X 1 JRNL REVDAT 1 07-DEC-04 1Y0X 0 JRNL AUTH B.SANDLER,P.WEBB,J.W.APRILETTI,B.R.HUBER,M.TOGASHI, JRNL AUTH 2 S.T.CUNHA LIMA,S.JURIC,S.NILSSON,R.WAGNER,R.J.FLETTERICK, JRNL AUTH 3 J.D.BAXTER JRNL TITL THYROXINE-THYROID HORMONE RECEPTOR INTERACTIONS. JRNL REF J.BIOL.CHEM. V. 279 55801 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15466465 JRNL DOI 10.1074/JBC.M410124200 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 6873 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.700 REMARK 3 FREE R VALUE TEST SET COUNT : 736 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 444 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1934 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.74000 REMARK 3 B22 (A**2) : 1.74000 REMARK 3 B33 (A**2) : -2.62000 REMARK 3 B12 (A**2) : 0.87000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.487 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.324 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.150 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.916 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.884 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2003 ; 0.040 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): 1843 ; 0.002 ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2718 ; 2.780 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): 4279 ; 2.112 ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 248 ; 6.930 ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 311 ; 0.161 ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2204 ; 0.015 ; NULL REMARK 3 GENERAL PLANES OTHERS (A): 399 ; 0.015 ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 543 ; 0.294 ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2154 ; 0.272 ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1282 ; 0.109 ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 36 ; 0.202 ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 26 ; 0.623 ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): 27 ; 0.320 ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1249 ; 1.582 ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2005 ; 2.952 ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 754 ; 4.324 ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 713 ; 6.992 ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Y0X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1000030976. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.09720 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11829 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 71.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 4.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: TRB-TRIAC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, CACODYLATE, PH 7.4, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 279K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.46667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.93333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 86.93333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.46667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 103.18500 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 59.57389 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 173.86667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET X 181 REMARK 465 GLY X 182 REMARK 465 SER X 183 REMARK 465 SER X 184 REMARK 465 HIS X 185 REMARK 465 HIS X 186 REMARK 465 HIS X 187 REMARK 465 HIS X 188 REMARK 465 HIS X 189 REMARK 465 HIS X 190 REMARK 465 SER X 191 REMARK 465 SER X 192 REMARK 465 GLY X 193 REMARK 465 LEU X 194 REMARK 465 VAL X 195 REMARK 465 PRO X 196 REMARK 465 ARG X 197 REMARK 465 GLY X 198 REMARK 465 GLN X 252 REMARK 465 ALA X 253 REMARK 465 PRO X 254 REMARK 465 ILE X 255 REMARK 465 VAL X 256 REMARK 465 ASN X 257 REMARK 465 ALA X 258 REMARK 465 PRO X 259 REMARK 465 GLU X 260 REMARK 465 GLY X 261 REMARK 465 GLY X 262 REMARK 465 LYS X 263 REMARK 465 ASP X 461 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER X 199 OG REMARK 470 HIS X 200 CG ND1 CD2 CE1 NE2 REMARK 470 MET X 201 CG SD CE REMARK 470 LYS X 206 CG CD CE NZ REMARK 470 HIS X 210 CG ND1 CD2 CE1 NE2 REMARK 470 GLU X 217 CG CD OE1 OE2 REMARK 470 LYS X 223 CG CD CE NZ REMARK 470 GLU X 227 CG CD OE1 OE2 REMARK 470 LYS X 274 CG CD CE NZ REMARK 470 GLU X 324 CG CD OE1 OE2 REMARK 470 GLU X 390 CG CD OE1 OE2 REMARK 470 LYS X 394 CG CD CE NZ REMARK 470 GLU X 445 CG CD OE1 OE2 REMARK 470 THR X 448 OG1 CG2 REMARK 470 GLU X 449 CG CD OE1 OE2 REMARK 470 GLU X 460 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE X 250 NE2 GLN X 340 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O MET X 201 OE1 GLU X 457 3664 1.28 REMARK 500 O MET X 201 CD GLU X 457 3664 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU X 220 CD GLU X 220 OE2 0.100 REMARK 500 LYS X 223 CA LYS X 223 CB 0.142 REMARK 500 PHE X 245 CZ PHE X 245 CE2 0.125 REMARK 500 GLU X 248 CG GLU X 248 CD 0.113 REMARK 500 GLU X 248 CD GLU X 248 OE2 0.068 REMARK 500 ASP X 249 CB ASP X 249 CG 0.127 REMARK 500 GLU X 267 CG GLU X 267 CD 0.120 REMARK 500 GLU X 267 CD GLU X 267 OE2 0.080 REMARK 500 GLU X 295 CD GLU X 295 OE2 0.066 REMARK 500 GLU X 299 CD GLU X 299 OE1 0.081 REMARK 500 PHE X 403 CD1 PHE X 403 CE1 -0.151 REMARK 500 PHE X 403 CE2 PHE X 403 CD2 -0.124 REMARK 500 ALA X 433 CA ALA X 433 CB -0.130 REMARK 500 ARG X 438 NE ARG X 438 CZ -0.088 REMARK 500 GLU X 449 CA GLU X 449 CB 0.143 REMARK 500 GLU X 457 CD GLU X 457 OE1 0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP X 265 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG X 282 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG X 282 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP X 300 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG X 316 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG X 320 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG X 320 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 PRO X 419 CA - N - CD ANGL. DEV. = -10.0 DEGREES REMARK 500 ARG X 429 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG X 438 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS X 200 86.78 -41.48 REMARK 500 GLU X 202 -66.02 29.02 REMARK 500 GLN X 205 -19.53 -49.51 REMARK 500 ALA X 234 117.54 -18.15 REMARK 500 GLU X 248 -28.98 -35.28 REMARK 500 ARG X 320 30.12 -96.27 REMARK 500 LYS X 411 71.20 36.47 REMARK 500 HIS X 441 -9.01 -54.39 REMARK 500 GLU X 445 -76.94 -57.83 REMARK 500 THR X 448 -34.24 -35.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE X 459 GLU X 460 148.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CAC X 503 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CAC X 504 AS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 388 SG REMARK 620 2 ARG X 391 NH2 104.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC X 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC X 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC X 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC X 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC X 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC X 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T44 X 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XZX RELATED DB: PDB REMARK 900 STRUCTURE OF THYROID HORMONE RECEPTOR LIGAND BINDING DOMAIN REMARK 900 LIGANDED WITH TRIIODOTHYRONINE. DBREF 1Y0X X 202 461 UNP P10828 THB1_HUMAN 202 461 SEQADV 1Y0X MET X 181 UNP P10828 EXPRESSION TAG SEQADV 1Y0X GLY X 182 UNP P10828 EXPRESSION TAG SEQADV 1Y0X SER X 183 UNP P10828 EXPRESSION TAG SEQADV 1Y0X SER X 184 UNP P10828 EXPRESSION TAG SEQADV 1Y0X HIS X 185 UNP P10828 EXPRESSION TAG SEQADV 1Y0X HIS X 186 UNP P10828 EXPRESSION TAG SEQADV 1Y0X HIS X 187 UNP P10828 EXPRESSION TAG SEQADV 1Y0X HIS X 188 UNP P10828 EXPRESSION TAG SEQADV 1Y0X HIS X 189 UNP P10828 EXPRESSION TAG SEQADV 1Y0X HIS X 190 UNP P10828 EXPRESSION TAG SEQADV 1Y0X SER X 191 UNP P10828 EXPRESSION TAG SEQADV 1Y0X SER X 192 UNP P10828 EXPRESSION TAG SEQADV 1Y0X GLY X 193 UNP P10828 EXPRESSION TAG SEQADV 1Y0X LEU X 194 UNP P10828 EXPRESSION TAG SEQADV 1Y0X VAL X 195 UNP P10828 EXPRESSION TAG SEQADV 1Y0X PRO X 196 UNP P10828 EXPRESSION TAG SEQADV 1Y0X ARG X 197 UNP P10828 EXPRESSION TAG SEQADV 1Y0X GLY X 198 UNP P10828 EXPRESSION TAG SEQADV 1Y0X SER X 199 UNP P10828 EXPRESSION TAG SEQADV 1Y0X HIS X 200 UNP P10828 EXPRESSION TAG SEQADV 1Y0X MET X 201 UNP P10828 EXPRESSION TAG SEQRES 1 X 281 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 X 281 LEU VAL PRO ARG GLY SER HIS MET GLU GLU LEU GLN LYS SEQRES 3 X 281 SER ILE GLY HIS LYS PRO GLU PRO THR ASP GLU GLU TRP SEQRES 4 X 281 GLU LEU ILE LYS THR VAL THR GLU ALA HIS VAL ALA THR SEQRES 5 X 281 ASN ALA GLN GLY SER HIS TRP LYS GLN LYS ARG LYS PHE SEQRES 6 X 281 LEU PRO GLU ASP ILE GLY GLN ALA PRO ILE VAL ASN ALA SEQRES 7 X 281 PRO GLU GLY GLY LYS VAL ASP LEU GLU ALA PHE SER HIS SEQRES 8 X 281 PHE THR LYS ILE ILE THR PRO ALA ILE THR ARG VAL VAL SEQRES 9 X 281 ASP PHE ALA LYS LYS LEU PRO MET PHE CYS GLU LEU PRO SEQRES 10 X 281 CYS GLU ASP GLN ILE ILE LEU LEU LYS GLY CYS CYS MET SEQRES 11 X 281 GLU ILE MET SER LEU ARG ALA ALA VAL ARG TYR ASP PRO SEQRES 12 X 281 GLU SER GLU THR LEU THR LEU ASN GLY GLU MET ALA VAL SEQRES 13 X 281 THR ARG GLY GLN LEU LYS ASN GLY GLY LEU GLY VAL VAL SEQRES 14 X 281 SER ASP ALA ILE PHE ASP LEU GLY MET SER LEU SER SER SEQRES 15 X 281 PHE ASN LEU ASP ASP THR GLU VAL ALA LEU LEU GLN ALA SEQRES 16 X 281 VAL LEU LEU MET SER SER ASP ARG PRO GLY LEU ALA CYS SEQRES 17 X 281 VAL GLU ARG ILE GLU LYS TYR GLN ASP SER PHE LEU LEU SEQRES 18 X 281 ALA PHE GLU HIS TYR ILE ASN TYR ARG LYS HIS HIS VAL SEQRES 19 X 281 THR HIS PHE TRP PRO LYS LEU LEU MET LYS VAL THR ASP SEQRES 20 X 281 LEU ARG MET ILE GLY ALA CYS HIS ALA SER ARG PHE LEU SEQRES 21 X 281 HIS MET LYS VAL GLU CYS PRO THR GLU LEU PHE PRO PRO SEQRES 22 X 281 LEU PHE LEU GLU VAL PHE GLU ASP HET CAC X 501 1 HET CAC X 502 1 HET CAC X 503 1 HET CAC X 504 1 HET CAC X 505 1 HET CAC X 506 1 HET T44 X 500 24 HETNAM CAC CACODYLATE ION HETNAM T44 3,5,3',5'-TETRAIODO-L-THYRONINE HETSYN CAC DIMETHYLARSINATE FORMUL 2 CAC 6(C2 H6 AS O2 1-) FORMUL 8 T44 C15 H11 I4 N O4 FORMUL 9 HOH *10(H2 O) HELIX 1 1 GLU X 203 SER X 207 5 5 HELIX 2 2 THR X 215 ASN X 233 1 19 HELIX 3 3 GLN X 235 TRP X 239 5 5 HELIX 4 4 ASP X 265 LYS X 289 1 25 HELIX 5 5 LEU X 290 GLU X 295 1 6 HELIX 6 6 PRO X 297 VAL X 319 1 23 HELIX 7 7 THR X 337 GLY X 344 1 8 HELIX 8 8 GLY X 347 LEU X 360 1 14 HELIX 9 9 ASP X 366 MET X 379 1 14 HELIX 10 10 CYS X 388 LYS X 411 1 24 HELIX 11 11 HIS X 416 CYS X 446 1 31 HELIX 12 12 PRO X 447 PHE X 451 5 5 HELIX 13 13 PRO X 452 GLU X 460 1 9 SHEET 1 A 3 LYS X 244 PHE X 245 0 SHEET 2 A 3 MET X 334 VAL X 336 1 O ALA X 335 N LYS X 244 SHEET 3 A 3 LEU X 328 LEU X 330 -1 N LEU X 330 O MET X 334 LINK SG CYS X 294 AS CAC X 501 1555 1555 2.64 LINK SG CYS X 298 AS CAC X 502 1555 1555 1.63 LINK SG CYS X 388 AS CAC X 504 1555 1555 2.73 LINK NH2 ARG X 391 AS CAC X 504 1555 1555 2.78 LINK SG CYS X 434 AS CAC X 505 1555 1555 2.17 LINK SG CYS X 434 AS CAC X 506 6766 1555 2.83 SITE 1 AC1 1 CYS X 294 SITE 1 AC2 2 CYS X 298 GLU X 299 SITE 1 AC3 2 HIS X 210 CYS X 298 SITE 1 AC4 2 CYS X 388 ARG X 391 SITE 1 AC5 2 ASP X 427 CYS X 434 SITE 1 AC6 1 CYS X 434 SITE 1 AC7 15 PHE X 272 ILE X 276 ALA X 279 ARG X 282 SITE 2 AC7 15 MET X 310 MET X 313 ARG X 316 LEU X 330 SITE 3 AC7 15 ASN X 331 LEU X 346 ILE X 353 HIS X 435 SITE 4 AC7 15 MET X 442 PHE X 455 PHE X 459 CRYST1 68.790 68.790 130.400 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014500 0.008400 0.000000 0.00000 SCALE2 0.000000 0.016800 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007700 0.00000