HEADER OXIDOREDUCTASE 20-NOV-04 1Y25 TITLE STRUCTURE OF MYCOBACTERIAL THIOL PEROXIDASE TPX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE THIOL PEROXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: THIOL PEROXIDASE RV1932 TPX PEROXIREDOXIN; COMPND 5 EC: 1.11.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: RV1932 TPX; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TUNER (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B(+) KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.STEHR,B.HOFFMANN,T.JGER,M.SINGH,H.J.HECHT REVDAT 6 25-OCT-23 1Y25 1 REMARK REVDAT 5 10-NOV-21 1Y25 1 REMARK SEQADV REVDAT 4 13-JUL-11 1Y25 1 VERSN REVDAT 3 18-AUG-09 1Y25 1 JRNL REVDAT 2 24-FEB-09 1Y25 1 VERSN REVDAT 1 20-NOV-05 1Y25 0 JRNL AUTH M.STEHR,H.J.HECHT,T.JAGER,L.FLOHE,M.SINGH JRNL TITL STRUCTURE OF THE INACTIVE VARIANT C60S OF MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS THIOL PEROXIDASE JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 62 563 2006 JRNL REFN ISSN 0907-4449 JRNL PMID 16627951 JRNL DOI 10.1107/S0907444906008249 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 23364 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1274 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1686 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.2220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2378 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 368 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 31.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : 0.15000 REMARK 3 B12 (A**2) : -0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.173 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.184 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.149 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.456 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2426 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2236 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3308 ; 2.320 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5178 ; 1.011 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 328 ; 7.262 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;34.820 ;24.468 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 348 ;15.749 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;25.774 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 390 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2798 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 472 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 546 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2230 ; 0.203 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1189 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1370 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 278 ; 0.210 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.328 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 55 ; 0.303 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.199 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2050 ; 1.386 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 678 ; 0.306 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2618 ; 1.696 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 869 ; 2.853 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 690 ; 3.975 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 165 REMARK 3 ORIGIN FOR THE GROUP (A): 32.3950 -28.1790 6.7120 REMARK 3 T TENSOR REMARK 3 T11: -0.0360 T22: -0.0560 REMARK 3 T33: -0.0359 T12: -0.0182 REMARK 3 T13: 0.0036 T23: 0.0359 REMARK 3 L TENSOR REMARK 3 L11: 1.4911 L22: 2.3567 REMARK 3 L33: 1.1125 L12: 0.9998 REMARK 3 L13: -0.6828 L23: -0.6407 REMARK 3 S TENSOR REMARK 3 S11: 0.0357 S12: 0.0334 S13: -0.1007 REMARK 3 S21: 0.1100 S22: -0.0870 S23: -0.1920 REMARK 3 S31: -0.0607 S32: 0.0806 S33: 0.0513 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 165 REMARK 3 ORIGIN FOR THE GROUP (A): 33.7480 4.4330 3.0500 REMARK 3 T TENSOR REMARK 3 T11: 0.1382 T22: -0.0757 REMARK 3 T33: -0.0986 T12: 0.0528 REMARK 3 T13: 0.0893 T23: 0.0241 REMARK 3 L TENSOR REMARK 3 L11: 0.7396 L22: 3.8797 REMARK 3 L33: 3.4737 L12: 0.1255 REMARK 3 L13: -0.1038 L23: -1.6727 REMARK 3 S TENSOR REMARK 3 S11: 0.0081 S12: -0.0551 S13: -0.0231 REMARK 3 S21: 0.8714 S22: 0.1590 S23: 0.3067 REMARK 3 S31: -0.5678 S32: -0.2594 S33: -0.1672 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1Y25 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1000031020. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-AUG-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMICS MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24893 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 92.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : 0.04800 REMARK 200 FOR THE DATA SET : 19.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.26000 REMARK 200 R SYM FOR SHELL (I) : 0.26000 REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1PSQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, PH 4.6, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.77800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.55600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 43.55600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 21.77800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1211 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2201 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2287 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU B 157 O HOH B 2337 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA B 165 C ALA B 165 OXT 0.123 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 91 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG B 43 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG B 43 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 65 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG B 108 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ALA B 165 CA - C - O ANGL. DEV. = 35.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 143 139.18 -177.14 REMARK 500 ALA A 151 -8.71 -59.86 REMARK 500 SER B 54 136.53 -173.63 REMARK 500 TYR B 143 144.68 -174.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 2200 DBREF 1Y25 A 3 165 UNP P66952 TPX_MYCTU 3 165 DBREF 1Y25 B 3 165 UNP P66952 TPX_MYCTU 3 165 SEQADV 1Y25 HIS A 1 UNP P66952 EXPRESSION TAG SEQADV 1Y25 SER A 2 UNP P66952 EXPRESSION TAG SEQADV 1Y25 SER A 60 UNP P66952 CYS 60 ENGINEERED MUTATION SEQADV 1Y25 HIS B 1 UNP P66952 EXPRESSION TAG SEQADV 1Y25 SER B 2 UNP P66952 EXPRESSION TAG SEQADV 1Y25 SER B 60 UNP P66952 CYS 60 ENGINEERED MUTATION SEQRES 1 A 165 HIS SER GLN ILE THR LEU ARG GLY ASN ALA ILE ASN THR SEQRES 2 A 165 VAL GLY GLU LEU PRO ALA VAL GLY SER PRO ALA PRO ALA SEQRES 3 A 165 PHE THR LEU THR GLY GLY ASP LEU GLY VAL ILE SER SER SEQRES 4 A 165 ASP GLN PHE ARG GLY LYS SER VAL LEU LEU ASN ILE PHE SEQRES 5 A 165 PRO SER VAL ASP THR PRO VAL SER ALA THR SER VAL ARG SEQRES 6 A 165 THR PHE ASP GLU ARG ALA ALA ALA SER GLY ALA THR VAL SEQRES 7 A 165 LEU CYS VAL SER LYS ASP LEU PRO PHE ALA GLN LYS ARG SEQRES 8 A 165 PHE CYS GLY ALA GLU GLY THR GLU ASN VAL MET PRO ALA SEQRES 9 A 165 SER ALA PHE ARG ASP SER PHE GLY GLU ASP TYR GLY VAL SEQRES 10 A 165 THR ILE ALA ASP GLY PRO MET ALA GLY LEU LEU ALA ARG SEQRES 11 A 165 ALA ILE VAL VAL ILE GLY ALA ASP GLY ASN VAL ALA TYR SEQRES 12 A 165 THR GLU LEU VAL PRO GLU ILE ALA GLN GLU PRO ASN TYR SEQRES 13 A 165 GLU ALA ALA LEU ALA ALA LEU GLY ALA SEQRES 1 B 165 HIS SER GLN ILE THR LEU ARG GLY ASN ALA ILE ASN THR SEQRES 2 B 165 VAL GLY GLU LEU PRO ALA VAL GLY SER PRO ALA PRO ALA SEQRES 3 B 165 PHE THR LEU THR GLY GLY ASP LEU GLY VAL ILE SER SER SEQRES 4 B 165 ASP GLN PHE ARG GLY LYS SER VAL LEU LEU ASN ILE PHE SEQRES 5 B 165 PRO SER VAL ASP THR PRO VAL SER ALA THR SER VAL ARG SEQRES 6 B 165 THR PHE ASP GLU ARG ALA ALA ALA SER GLY ALA THR VAL SEQRES 7 B 165 LEU CYS VAL SER LYS ASP LEU PRO PHE ALA GLN LYS ARG SEQRES 8 B 165 PHE CYS GLY ALA GLU GLY THR GLU ASN VAL MET PRO ALA SEQRES 9 B 165 SER ALA PHE ARG ASP SER PHE GLY GLU ASP TYR GLY VAL SEQRES 10 B 165 THR ILE ALA ASP GLY PRO MET ALA GLY LEU LEU ALA ARG SEQRES 11 B 165 ALA ILE VAL VAL ILE GLY ALA ASP GLY ASN VAL ALA TYR SEQRES 12 B 165 THR GLU LEU VAL PRO GLU ILE ALA GLN GLU PRO ASN TYR SEQRES 13 B 165 GLU ALA ALA LEU ALA ALA LEU GLY ALA HET ACT A1200 4 HET ACT B2200 4 HETNAM ACT ACETATE ION FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 5 HOH *368(H2 O) HELIX 1 1 ASP A 40 ARG A 43 5 4 HELIX 2 2 THR A 57 GLY A 75 1 19 HELIX 3 3 LEU A 85 GLY A 97 1 13 HELIX 4 4 SER A 110 TYR A 115 1 6 HELIX 5 5 ASP A 121 ALA A 125 5 5 HELIX 6 6 ASN A 155 GLY A 164 1 10 HELIX 7 7 ASP B 40 ARG B 43 5 4 HELIX 8 8 THR B 57 GLY B 75 1 19 HELIX 9 9 LEU B 85 GLY B 97 1 13 HELIX 10 10 SER B 110 TYR B 115 1 6 HELIX 11 11 ASN B 155 ALA B 165 1 11 SHEET 1 A 2 GLN A 3 LEU A 6 0 SHEET 2 A 2 ASN A 9 ASN A 12 -1 O ILE A 11 N ILE A 4 SHEET 1 B 2 THR A 28 THR A 30 0 SHEET 2 B 2 VAL A 36 SER A 38 -1 O ILE A 37 N LEU A 29 SHEET 1 C 5 VAL A 101 SER A 105 0 SHEET 2 C 5 VAL A 78 SER A 82 1 N CYS A 80 O MET A 102 SHEET 3 C 5 VAL A 47 ILE A 51 1 N LEU A 48 O LEU A 79 SHEET 4 C 5 ALA A 131 ILE A 135 -1 O VAL A 133 N LEU A 49 SHEET 5 C 5 VAL A 141 LEU A 146 -1 O ALA A 142 N VAL A 134 SHEET 1 D 2 GLN B 3 LEU B 6 0 SHEET 2 D 2 ASN B 9 ASN B 12 -1 O ILE B 11 N ILE B 4 SHEET 1 E 2 THR B 28 THR B 30 0 SHEET 2 E 2 VAL B 36 SER B 38 -1 O ILE B 37 N LEU B 29 SHEET 1 F 5 MET B 102 SER B 105 0 SHEET 2 F 5 VAL B 78 SER B 82 1 N CYS B 80 O MET B 102 SHEET 3 F 5 VAL B 47 ILE B 51 1 N ASN B 50 O LEU B 79 SHEET 4 F 5 ALA B 131 ILE B 135 -1 O VAL B 133 N LEU B 49 SHEET 5 F 5 VAL B 141 LEU B 146 -1 O TYR B 143 N VAL B 134 SITE 1 AC1 5 THR A 57 PRO A 58 VAL A 59 SER A 60 SITE 2 AC1 5 ARG A 130 SITE 1 AC2 6 THR B 57 PRO B 58 VAL B 59 SER B 60 SITE 2 AC2 6 ARG B 130 HOH B2298 CRYST1 106.089 106.089 65.334 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009426 0.005442 0.000000 0.00000 SCALE2 0.000000 0.010884 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015306 0.00000