data_1Y2T # _entry.id 1Y2T # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1Y2T RCSB RCSB031044 WWPDB D_1000031044 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1Y2U 'The same protein in complex with Lacto-N-biose' unspecified PDB 1Y2V 'The same protein in complex with T-antigen' unspecified PDB 1Y2W 'The same protein in complex with T-antigen and N-acetylglucosamine, orthorhombic form' unspecified PDB 1Y2X 'The same protein in complex with T-antigen and N-acetylglucosamine, tetragonal form' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1Y2T _pdbx_database_status.recvd_initial_deposition_date 2004-11-23 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Carrizo, M.E.' 1 'Capaldi, S.' 2 'Perduca, M.' 3 'Irazoqui, F.J.' 4 'Nores, G.A.' 5 'Monaco, H.L.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;The Antineoplastic Lectin of the Common Edible Mushroom (Agaricus bisporus) Has Two Binding Sites, Each Specific for a Different Configuration at a Single Epimeric Hydroxyl ; J.Biol.Chem. 280 10614 10623 2005 JBCHA3 US 0021-9258 0071 ? 15596442 10.1074/jbc.M411989200 1 'Crystallization and preliminary X-ray study of the common edible mushroom (Agaricus bisporus) lectin' 'ACTA CRYSTALLOGR.,SECT.D' 60 718 720 2004 ABCRE6 DK 0907-4449 0766 ? 15039564 10.1107/S0907444904001969 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Carrizo, M.E.' 1 primary 'Capaldi, S.' 2 primary 'Perduca, M.' 3 primary 'Irazoqui, F.J.' 4 primary 'Nores, G.A.' 5 primary 'Monaco, H.L.' 6 1 'Carrizo, M.E.' 7 1 'Irazoqui, F.J.' 8 1 'Lardone, R.D.' 9 1 'Nores, G.A.' 10 1 'Curtino, J.A.' 11 1 'Capaldi, S.' 12 1 'Perduca, M.' 13 1 'Monaco, H.L.' 14 # _cell.entry_id 1Y2T _cell.length_a 91.935 _cell.length_b 96.681 _cell.length_c 75.430 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Y2T _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat lectin 16069.765 2 ? ? ? ? 2 water nat water 18.015 168 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;TYTISIRVYQTTPKGFFRPVERTNWKYANGGTWDEVRGEYVLTMGGSGTSGSLRFVSSDTDESFVATFGVHNYKRWCDIV TNLTNEQTALVINQEYYGVPIRDQARENQLTSYNVANAKGRRFAIEYTVTEGDNLKANLIIG ; _entity_poly.pdbx_seq_one_letter_code_can ;TYTISIRVYQTTPKGFFRPVERTNWKYANGGTWDEVRGEYVLTMGGSGTSGSLRFVSSDTDESFVATFGVHNYKRWCDIV TNLTNEQTALVINQEYYGVPIRDQARENQLTSYNVANAKGRRFAIEYTVTEGDNLKANLIIG ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 TYR n 1 3 THR n 1 4 ILE n 1 5 SER n 1 6 ILE n 1 7 ARG n 1 8 VAL n 1 9 TYR n 1 10 GLN n 1 11 THR n 1 12 THR n 1 13 PRO n 1 14 LYS n 1 15 GLY n 1 16 PHE n 1 17 PHE n 1 18 ARG n 1 19 PRO n 1 20 VAL n 1 21 GLU n 1 22 ARG n 1 23 THR n 1 24 ASN n 1 25 TRP n 1 26 LYS n 1 27 TYR n 1 28 ALA n 1 29 ASN n 1 30 GLY n 1 31 GLY n 1 32 THR n 1 33 TRP n 1 34 ASP n 1 35 GLU n 1 36 VAL n 1 37 ARG n 1 38 GLY n 1 39 GLU n 1 40 TYR n 1 41 VAL n 1 42 LEU n 1 43 THR n 1 44 MET n 1 45 GLY n 1 46 GLY n 1 47 SER n 1 48 GLY n 1 49 THR n 1 50 SER n 1 51 GLY n 1 52 SER n 1 53 LEU n 1 54 ARG n 1 55 PHE n 1 56 VAL n 1 57 SER n 1 58 SER n 1 59 ASP n 1 60 THR n 1 61 ASP n 1 62 GLU n 1 63 SER n 1 64 PHE n 1 65 VAL n 1 66 ALA n 1 67 THR n 1 68 PHE n 1 69 GLY n 1 70 VAL n 1 71 HIS n 1 72 ASN n 1 73 TYR n 1 74 LYS n 1 75 ARG n 1 76 TRP n 1 77 CYS n 1 78 ASP n 1 79 ILE n 1 80 VAL n 1 81 THR n 1 82 ASN n 1 83 LEU n 1 84 THR n 1 85 ASN n 1 86 GLU n 1 87 GLN n 1 88 THR n 1 89 ALA n 1 90 LEU n 1 91 VAL n 1 92 ILE n 1 93 ASN n 1 94 GLN n 1 95 GLU n 1 96 TYR n 1 97 TYR n 1 98 GLY n 1 99 VAL n 1 100 PRO n 1 101 ILE n 1 102 ARG n 1 103 ASP n 1 104 GLN n 1 105 ALA n 1 106 ARG n 1 107 GLU n 1 108 ASN n 1 109 GLN n 1 110 LEU n 1 111 THR n 1 112 SER n 1 113 TYR n 1 114 ASN n 1 115 VAL n 1 116 ALA n 1 117 ASN n 1 118 ALA n 1 119 LYS n 1 120 GLY n 1 121 ARG n 1 122 ARG n 1 123 PHE n 1 124 ALA n 1 125 ILE n 1 126 GLU n 1 127 TYR n 1 128 THR n 1 129 VAL n 1 130 THR n 1 131 GLU n 1 132 GLY n 1 133 ASP n 1 134 ASN n 1 135 LEU n 1 136 LYS n 1 137 ALA n 1 138 ASN n 1 139 LEU n 1 140 ILE n 1 141 ILE n 1 142 GLY n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Agaricus bisporus' _entity_src_nat.pdbx_ncbi_taxonomy_id 5341 _entity_src_nat.genus Agaricus _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ABL_AGABI _struct_ref.pdbx_db_accession Q00022 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TYTISIRVYQTTPKGFFRPVERTNWKYANGGTWDEVRGEYVLTMGGSGTSGSLRFVSSDTDEIFVATFGVHNYKRWCDIV TNLTNEQTALVINQEYYGVPIRDQARENQLTSYNVANAKGRRFAIEYTVTEG ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1Y2T A 1 ? 132 ? Q00022 2 ? 133 ? 2 133 2 1 1Y2T B 1 ? 132 ? Q00022 2 ? 133 ? 2 133 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1Y2T SER A 63 ? UNP Q00022 ILE 64 'SEE REMARK 999' 64 1 1 1Y2T ASP A 133 ? UNP Q00022 ? ? 'SEE REMARK 999' 134 2 1 1Y2T ASN A 134 ? UNP Q00022 ? ? 'SEE REMARK 999' 135 3 1 1Y2T LEU A 135 ? UNP Q00022 ? ? 'SEE REMARK 999' 136 4 1 1Y2T LYS A 136 ? UNP Q00022 ? ? 'SEE REMARK 999' 137 5 1 1Y2T ALA A 137 ? UNP Q00022 ? ? 'SEE REMARK 999' 138 6 1 1Y2T ASN A 138 ? UNP Q00022 ? ? 'SEE REMARK 999' 139 7 1 1Y2T LEU A 139 ? UNP Q00022 ? ? 'SEE REMARK 999' 140 8 1 1Y2T ILE A 140 ? UNP Q00022 ? ? 'SEE REMARK 999' 141 9 1 1Y2T ILE A 141 ? UNP Q00022 ? ? 'SEE REMARK 999' 142 10 1 1Y2T GLY A 142 ? UNP Q00022 ? ? 'SEE REMARK 999' 143 11 2 1Y2T SER B 63 ? UNP Q00022 ILE 64 'SEE REMARK 999' 64 12 2 1Y2T ASP B 133 ? UNP Q00022 ? ? 'SEE REMARK 999' 134 13 2 1Y2T ASN B 134 ? UNP Q00022 ? ? 'SEE REMARK 999' 135 14 2 1Y2T LEU B 135 ? UNP Q00022 ? ? 'SEE REMARK 999' 136 15 2 1Y2T LYS B 136 ? UNP Q00022 ? ? 'SEE REMARK 999' 137 16 2 1Y2T ALA B 137 ? UNP Q00022 ? ? 'SEE REMARK 999' 138 17 2 1Y2T ASN B 138 ? UNP Q00022 ? ? 'SEE REMARK 999' 139 18 2 1Y2T LEU B 139 ? UNP Q00022 ? ? 'SEE REMARK 999' 140 19 2 1Y2T ILE B 140 ? UNP Q00022 ? ? 'SEE REMARK 999' 141 20 2 1Y2T ILE B 141 ? UNP Q00022 ? ? 'SEE REMARK 999' 142 21 2 1Y2T GLY B 142 ? UNP Q00022 ? ? 'SEE REMARK 999' 143 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1Y2T _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.6 _exptl_crystal.density_percent_sol 52.5 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details 'Sodium formate, Tris, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2002-07-24 _diffrn_detector.details 'Three-segment Pt-coated toroidal' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double Crystal (Si111, Si220)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ELETTRA BEAMLINE 5.2R' _diffrn_source.pdbx_synchrotron_site ELETTRA _diffrn_source.pdbx_synchrotron_beamline 5.2R _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.00 # _reflns.entry_id 1Y2T _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 1.5 _reflns.d_resolution_low 74.5 _reflns.number_all 53757 _reflns.number_obs 53757 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.047 _reflns.pdbx_netI_over_sigmaI 7.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.58 _reflns_shell.percent_possible_all 97.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.087 _reflns_shell.meanI_over_sigI_obs 7.1 _reflns_shell.pdbx_redundancy 4.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 7606 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1Y2T _refine.ls_number_reflns_obs 48264 _refine.ls_number_reflns_all 48264 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 65.94 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 99.43 _refine.ls_R_factor_obs 0.18887 _refine.ls_R_factor_all 0.18887 _refine.ls_R_factor_R_work 0.18727 _refine.ls_R_factor_R_free 0.20298 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.2 _refine.ls_number_reflns_R_free 5466 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.953 _refine.correlation_coeff_Fo_to_Fc_free 0.947 _refine.B_iso_mean 12.461 _refine.aniso_B[1][1] -0.22 _refine.aniso_B[2][2] 0.54 _refine.aniso_B[3][3] -0.31 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MIR _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.073 _refine.pdbx_overall_ESU_R_Free 0.071 _refine.overall_SU_ML 0.040 _refine.overall_SU_B 1.047 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2270 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 168 _refine_hist.number_atoms_total 2438 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 65.94 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.005 0.021 ? 2318 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.903 1.917 ? 3148 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.927 5.000 ? 282 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.061 0.200 ? 344 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.002 0.020 ? 1808 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.166 0.200 ? 955 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.072 0.200 ? 170 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.112 0.200 ? 50 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.077 0.200 ? 19 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.306 1.500 ? 1400 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.585 2.000 ? 2264 'X-RAY DIFFRACTION' ? r_scbond_it 0.857 3.000 ? 918 'X-RAY DIFFRACTION' ? r_scangle_it 1.448 4.500 ? 884 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.500 _refine_ls_shell.d_res_low 1.539 _refine_ls_shell.number_reflns_R_work 3385 _refine_ls_shell.R_factor_R_work 0.2 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.206 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 388 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1Y2T _struct.title 'Crystal structure of the common edible mushroom (Agaricus bisporus) lectin' _struct.pdbx_descriptor lectin _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1Y2T _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text 'ABL, Agaricus bisporus, lectin, mushroom, SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details 'The biological assembly is a tetramer generated from the dimer in the asymmetric unit by the operations: -x, y, 1/2-z' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 26 ? GLY A 30 ? LYS A 27 GLY A 31 5 ? 5 HELX_P HELX_P2 2 THR A 88 ? TYR A 96 ? THR A 89 TYR A 97 1 ? 9 HELX_P HELX_P3 3 VAL A 99 ? ASN A 108 ? VAL A 100 ASN A 109 1 ? 10 HELX_P HELX_P4 4 THR B 88 ? TYR B 96 ? THR B 89 TYR B 97 1 ? 9 HELX_P HELX_P5 5 VAL B 99 ? ASN B 108 ? VAL B 100 ASN B 109 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 4 ? C ? 6 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 32 ? VAL A 36 ? THR A 33 VAL A 37 A 2 GLU A 39 ? MET A 44 ? GLU A 40 MET A 45 A 3 TYR A 2 ? GLN A 10 ? TYR A 3 GLN A 11 A 4 ASN A 134 ? ILE A 141 ? ASN A 135 ILE A 142 A 5 ARG A 122 ? VAL A 129 ? ARG A 123 VAL A 130 A 6 SER A 112 ? ALA A 116 ? SER A 113 ALA A 117 B 1 ARG A 18 ? ASN A 24 ? ARG A 19 ASN A 25 B 2 SER A 50 ? SER A 57 ? SER A 51 SER A 58 B 3 GLU A 62 ? HIS A 71 ? GLU A 63 HIS A 72 B 4 LYS A 74 ? THR A 81 ? LYS A 75 THR A 82 C 1 GLY B 31 ? VAL B 36 ? GLY B 32 VAL B 37 C 2 GLU B 39 ? MET B 44 ? GLU B 40 MET B 45 C 3 TYR B 2 ? GLN B 10 ? TYR B 3 GLN B 11 C 4 ASN B 134 ? ILE B 141 ? ASN B 135 ILE B 142 C 5 ARG B 122 ? VAL B 129 ? ARG B 123 VAL B 130 C 6 SER B 112 ? ALA B 116 ? SER B 113 ALA B 117 D 1 ARG B 18 ? ASN B 24 ? ARG B 19 ASN B 25 D 2 SER B 50 ? SER B 57 ? SER B 51 SER B 58 D 3 GLU B 62 ? HIS B 71 ? GLU B 63 HIS B 72 D 4 LYS B 74 ? THR B 81 ? LYS B 75 THR B 82 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASP A 34 ? N ASP A 35 O VAL A 41 ? O VAL A 42 A 2 3 O TYR A 40 ? O TYR A 41 N ILE A 6 ? N ILE A 7 A 3 4 N TYR A 9 ? N TYR A 10 O ILE A 141 ? O ILE A 142 A 4 5 O ASN A 138 ? O ASN A 139 N GLU A 126 ? N GLU A 127 A 5 6 O PHE A 123 ? O PHE A 124 N VAL A 115 ? N VAL A 116 B 1 2 N VAL A 20 ? N VAL A 21 O ARG A 54 ? O ARG A 55 B 2 3 N SER A 57 ? N SER A 58 O GLU A 62 ? O GLU A 63 B 3 4 N HIS A 71 ? N HIS A 72 O LYS A 74 ? O LYS A 75 C 1 2 N ASP B 34 ? N ASP B 35 O VAL B 41 ? O VAL B 42 C 2 3 O TYR B 40 ? O TYR B 41 N ILE B 6 ? N ILE B 7 C 3 4 N TYR B 9 ? N TYR B 10 O ILE B 141 ? O ILE B 142 C 4 5 O ILE B 140 ? O ILE B 141 N ALA B 124 ? N ALA B 125 C 5 6 O PHE B 123 ? O PHE B 124 N VAL B 115 ? N VAL B 116 D 1 2 N VAL B 20 ? N VAL B 21 O ARG B 54 ? O ARG B 55 D 2 3 N SER B 57 ? N SER B 58 O GLU B 62 ? O GLU B 63 D 3 4 N HIS B 71 ? N HIS B 72 O LYS B 74 ? O LYS B 75 # _database_PDB_matrix.entry_id 1Y2T _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1Y2T _atom_sites.fract_transf_matrix[1][1] 0.010877 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010343 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013257 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 2 2 THR THR A . n A 1 2 TYR 2 3 3 TYR TYR A . n A 1 3 THR 3 4 4 THR THR A . n A 1 4 ILE 4 5 5 ILE ILE A . n A 1 5 SER 5 6 6 SER SER A . n A 1 6 ILE 6 7 7 ILE ILE A . n A 1 7 ARG 7 8 8 ARG ARG A . n A 1 8 VAL 8 9 9 VAL VAL A . n A 1 9 TYR 9 10 10 TYR TYR A . n A 1 10 GLN 10 11 11 GLN GLN A . n A 1 11 THR 11 12 12 THR THR A . n A 1 12 THR 12 13 13 THR THR A . n A 1 13 PRO 13 14 14 PRO PRO A . n A 1 14 LYS 14 15 15 LYS LYS A . n A 1 15 GLY 15 16 16 GLY GLY A . n A 1 16 PHE 16 17 17 PHE PHE A . n A 1 17 PHE 17 18 18 PHE PHE A . n A 1 18 ARG 18 19 19 ARG ARG A . n A 1 19 PRO 19 20 20 PRO PRO A . n A 1 20 VAL 20 21 21 VAL VAL A . n A 1 21 GLU 21 22 22 GLU GLU A . n A 1 22 ARG 22 23 23 ARG ARG A . n A 1 23 THR 23 24 24 THR THR A . n A 1 24 ASN 24 25 25 ASN ASN A . n A 1 25 TRP 25 26 26 TRP TRP A . n A 1 26 LYS 26 27 27 LYS LYS A . n A 1 27 TYR 27 28 28 TYR TYR A . n A 1 28 ALA 28 29 29 ALA ALA A . n A 1 29 ASN 29 30 30 ASN ASN A . n A 1 30 GLY 30 31 31 GLY GLY A . n A 1 31 GLY 31 32 32 GLY GLY A . n A 1 32 THR 32 33 33 THR THR A . n A 1 33 TRP 33 34 34 TRP TRP A . n A 1 34 ASP 34 35 35 ASP ASP A . n A 1 35 GLU 35 36 36 GLU GLU A . n A 1 36 VAL 36 37 37 VAL VAL A . n A 1 37 ARG 37 38 38 ARG ARG A . n A 1 38 GLY 38 39 39 GLY GLY A . n A 1 39 GLU 39 40 40 GLU GLU A . n A 1 40 TYR 40 41 41 TYR TYR A . n A 1 41 VAL 41 42 42 VAL VAL A . n A 1 42 LEU 42 43 43 LEU LEU A . n A 1 43 THR 43 44 44 THR THR A . n A 1 44 MET 44 45 45 MET MET A . n A 1 45 GLY 45 46 46 GLY GLY A . n A 1 46 GLY 46 47 47 GLY GLY A . n A 1 47 SER 47 48 48 SER SER A . n A 1 48 GLY 48 49 49 GLY GLY A . n A 1 49 THR 49 50 50 THR THR A . n A 1 50 SER 50 51 51 SER SER A . n A 1 51 GLY 51 52 52 GLY GLY A . n A 1 52 SER 52 53 53 SER SER A . n A 1 53 LEU 53 54 54 LEU LEU A . n A 1 54 ARG 54 55 55 ARG ARG A . n A 1 55 PHE 55 56 56 PHE PHE A . n A 1 56 VAL 56 57 57 VAL VAL A . n A 1 57 SER 57 58 58 SER SER A . n A 1 58 SER 58 59 59 SER SER A . n A 1 59 ASP 59 60 60 ASP ASP A . n A 1 60 THR 60 61 61 THR THR A . n A 1 61 ASP 61 62 62 ASP ASP A . n A 1 62 GLU 62 63 63 GLU GLU A . n A 1 63 SER 63 64 64 SER SER A . n A 1 64 PHE 64 65 65 PHE PHE A . n A 1 65 VAL 65 66 66 VAL VAL A . n A 1 66 ALA 66 67 67 ALA ALA A . n A 1 67 THR 67 68 68 THR THR A . n A 1 68 PHE 68 69 69 PHE PHE A . n A 1 69 GLY 69 70 70 GLY GLY A . n A 1 70 VAL 70 71 71 VAL VAL A . n A 1 71 HIS 71 72 72 HIS HIS A . n A 1 72 ASN 72 73 73 ASN ASN A . n A 1 73 TYR 73 74 74 TYR TYR A . n A 1 74 LYS 74 75 75 LYS LYS A . n A 1 75 ARG 75 76 76 ARG ARG A . n A 1 76 TRP 76 77 77 TRP TRP A . n A 1 77 CYS 77 78 78 CYS CYS A . n A 1 78 ASP 78 79 79 ASP ASP A . n A 1 79 ILE 79 80 80 ILE ILE A . n A 1 80 VAL 80 81 81 VAL VAL A . n A 1 81 THR 81 82 82 THR THR A . n A 1 82 ASN 82 83 83 ASN ASN A . n A 1 83 LEU 83 84 84 LEU LEU A . n A 1 84 THR 84 85 85 THR THR A . n A 1 85 ASN 85 86 86 ASN ASN A . n A 1 86 GLU 86 87 87 GLU GLU A . n A 1 87 GLN 87 88 88 GLN GLN A . n A 1 88 THR 88 89 89 THR THR A . n A 1 89 ALA 89 90 90 ALA ALA A . n A 1 90 LEU 90 91 91 LEU LEU A . n A 1 91 VAL 91 92 92 VAL VAL A . n A 1 92 ILE 92 93 93 ILE ILE A . n A 1 93 ASN 93 94 94 ASN ASN A . n A 1 94 GLN 94 95 95 GLN GLN A . n A 1 95 GLU 95 96 96 GLU GLU A . n A 1 96 TYR 96 97 97 TYR TYR A . n A 1 97 TYR 97 98 98 TYR TYR A . n A 1 98 GLY 98 99 99 GLY GLY A . n A 1 99 VAL 99 100 100 VAL VAL A . n A 1 100 PRO 100 101 101 PRO PRO A . n A 1 101 ILE 101 102 102 ILE ILE A . n A 1 102 ARG 102 103 103 ARG ARG A . n A 1 103 ASP 103 104 104 ASP ASP A . n A 1 104 GLN 104 105 105 GLN GLN A . n A 1 105 ALA 105 106 106 ALA ALA A . n A 1 106 ARG 106 107 107 ARG ARG A . n A 1 107 GLU 107 108 108 GLU GLU A . n A 1 108 ASN 108 109 109 ASN ASN A . n A 1 109 GLN 109 110 110 GLN GLN A . n A 1 110 LEU 110 111 111 LEU LEU A . n A 1 111 THR 111 112 112 THR THR A . n A 1 112 SER 112 113 113 SER SER A . n A 1 113 TYR 113 114 114 TYR TYR A . n A 1 114 ASN 114 115 115 ASN ASN A . n A 1 115 VAL 115 116 116 VAL VAL A . n A 1 116 ALA 116 117 117 ALA ALA A . n A 1 117 ASN 117 118 118 ASN ASN A . n A 1 118 ALA 118 119 119 ALA ALA A . n A 1 119 LYS 119 120 120 LYS LYS A . n A 1 120 GLY 120 121 121 GLY GLY A . n A 1 121 ARG 121 122 122 ARG ARG A . n A 1 122 ARG 122 123 123 ARG ARG A . n A 1 123 PHE 123 124 124 PHE PHE A . n A 1 124 ALA 124 125 125 ALA ALA A . n A 1 125 ILE 125 126 126 ILE ILE A . n A 1 126 GLU 126 127 127 GLU GLU A . n A 1 127 TYR 127 128 128 TYR TYR A . n A 1 128 THR 128 129 129 THR THR A . n A 1 129 VAL 129 130 130 VAL VAL A . n A 1 130 THR 130 131 131 THR THR A . n A 1 131 GLU 131 132 132 GLU GLU A . n A 1 132 GLY 132 133 133 GLY GLY A . n A 1 133 ASP 133 134 134 ASP ASP A . n A 1 134 ASN 134 135 135 ASN ASN A . n A 1 135 LEU 135 136 136 LEU LEU A . n A 1 136 LYS 136 137 137 LYS LYS A . n A 1 137 ALA 137 138 138 ALA ALA A . n A 1 138 ASN 138 139 139 ASN ASN A . n A 1 139 LEU 139 140 140 LEU LEU A . n A 1 140 ILE 140 141 141 ILE ILE A . n A 1 141 ILE 141 142 142 ILE ILE A . n A 1 142 GLY 142 143 143 GLY GLY A . n B 1 1 THR 1 2 2 THR THR B . n B 1 2 TYR 2 3 3 TYR TYR B . n B 1 3 THR 3 4 4 THR THR B . n B 1 4 ILE 4 5 5 ILE ILE B . n B 1 5 SER 5 6 6 SER SER B . n B 1 6 ILE 6 7 7 ILE ILE B . n B 1 7 ARG 7 8 8 ARG ARG B . n B 1 8 VAL 8 9 9 VAL VAL B . n B 1 9 TYR 9 10 10 TYR TYR B . n B 1 10 GLN 10 11 11 GLN GLN B . n B 1 11 THR 11 12 12 THR THR B . n B 1 12 THR 12 13 13 THR THR B . n B 1 13 PRO 13 14 14 PRO PRO B . n B 1 14 LYS 14 15 15 LYS LYS B . n B 1 15 GLY 15 16 16 GLY GLY B . n B 1 16 PHE 16 17 17 PHE PHE B . n B 1 17 PHE 17 18 18 PHE PHE B . n B 1 18 ARG 18 19 19 ARG ARG B . n B 1 19 PRO 19 20 20 PRO PRO B . n B 1 20 VAL 20 21 21 VAL VAL B . n B 1 21 GLU 21 22 22 GLU GLU B . n B 1 22 ARG 22 23 23 ARG ARG B . n B 1 23 THR 23 24 24 THR THR B . n B 1 24 ASN 24 25 25 ASN ASN B . n B 1 25 TRP 25 26 26 TRP TRP B . n B 1 26 LYS 26 27 27 LYS LYS B . n B 1 27 TYR 27 28 28 TYR TYR B . n B 1 28 ALA 28 29 29 ALA ALA B . n B 1 29 ASN 29 30 30 ASN ASN B . n B 1 30 GLY 30 31 31 GLY GLY B . n B 1 31 GLY 31 32 32 GLY GLY B . n B 1 32 THR 32 33 33 THR THR B . n B 1 33 TRP 33 34 34 TRP TRP B . n B 1 34 ASP 34 35 35 ASP ASP B . n B 1 35 GLU 35 36 36 GLU GLU B . n B 1 36 VAL 36 37 37 VAL VAL B . n B 1 37 ARG 37 38 38 ARG ARG B . n B 1 38 GLY 38 39 39 GLY GLY B . n B 1 39 GLU 39 40 40 GLU GLU B . n B 1 40 TYR 40 41 41 TYR TYR B . n B 1 41 VAL 41 42 42 VAL VAL B . n B 1 42 LEU 42 43 43 LEU LEU B . n B 1 43 THR 43 44 44 THR THR B . n B 1 44 MET 44 45 45 MET MET B . n B 1 45 GLY 45 46 46 GLY GLY B . n B 1 46 GLY 46 47 47 GLY GLY B . n B 1 47 SER 47 48 48 SER SER B . n B 1 48 GLY 48 49 49 GLY GLY B . n B 1 49 THR 49 50 50 THR THR B . n B 1 50 SER 50 51 51 SER SER B . n B 1 51 GLY 51 52 52 GLY GLY B . n B 1 52 SER 52 53 53 SER SER B . n B 1 53 LEU 53 54 54 LEU LEU B . n B 1 54 ARG 54 55 55 ARG ARG B . n B 1 55 PHE 55 56 56 PHE PHE B . n B 1 56 VAL 56 57 57 VAL VAL B . n B 1 57 SER 57 58 58 SER SER B . n B 1 58 SER 58 59 59 SER SER B . n B 1 59 ASP 59 60 60 ASP ASP B . n B 1 60 THR 60 61 61 THR THR B . n B 1 61 ASP 61 62 62 ASP ASP B . n B 1 62 GLU 62 63 63 GLU GLU B . n B 1 63 SER 63 64 64 SER SER B . n B 1 64 PHE 64 65 65 PHE PHE B . n B 1 65 VAL 65 66 66 VAL VAL B . n B 1 66 ALA 66 67 67 ALA ALA B . n B 1 67 THR 67 68 68 THR THR B . n B 1 68 PHE 68 69 69 PHE PHE B . n B 1 69 GLY 69 70 70 GLY GLY B . n B 1 70 VAL 70 71 71 VAL VAL B . n B 1 71 HIS 71 72 72 HIS HIS B . n B 1 72 ASN 72 73 73 ASN ASN B . n B 1 73 TYR 73 74 74 TYR TYR B . n B 1 74 LYS 74 75 75 LYS LYS B . n B 1 75 ARG 75 76 76 ARG ARG B . n B 1 76 TRP 76 77 77 TRP TRP B . n B 1 77 CYS 77 78 78 CYS CYS B . n B 1 78 ASP 78 79 79 ASP ASP B . n B 1 79 ILE 79 80 80 ILE ILE B . n B 1 80 VAL 80 81 81 VAL VAL B . n B 1 81 THR 81 82 82 THR THR B . n B 1 82 ASN 82 83 83 ASN ASN B . n B 1 83 LEU 83 84 84 LEU LEU B . n B 1 84 THR 84 85 85 THR THR B . n B 1 85 ASN 85 86 86 ASN ASN B . n B 1 86 GLU 86 87 87 GLU GLU B . n B 1 87 GLN 87 88 88 GLN GLN B . n B 1 88 THR 88 89 89 THR THR B . n B 1 89 ALA 89 90 90 ALA ALA B . n B 1 90 LEU 90 91 91 LEU LEU B . n B 1 91 VAL 91 92 92 VAL VAL B . n B 1 92 ILE 92 93 93 ILE ILE B . n B 1 93 ASN 93 94 94 ASN ASN B . n B 1 94 GLN 94 95 95 GLN GLN B . n B 1 95 GLU 95 96 96 GLU GLU B . n B 1 96 TYR 96 97 97 TYR TYR B . n B 1 97 TYR 97 98 98 TYR TYR B . n B 1 98 GLY 98 99 99 GLY GLY B . n B 1 99 VAL 99 100 100 VAL VAL B . n B 1 100 PRO 100 101 101 PRO PRO B . n B 1 101 ILE 101 102 102 ILE ILE B . n B 1 102 ARG 102 103 103 ARG ARG B . n B 1 103 ASP 103 104 104 ASP ASP B . n B 1 104 GLN 104 105 105 GLN GLN B . n B 1 105 ALA 105 106 106 ALA ALA B . n B 1 106 ARG 106 107 107 ARG ARG B . n B 1 107 GLU 107 108 108 GLU GLU B . n B 1 108 ASN 108 109 109 ASN ASN B . n B 1 109 GLN 109 110 110 GLN GLN B . n B 1 110 LEU 110 111 111 LEU LEU B . n B 1 111 THR 111 112 112 THR THR B . n B 1 112 SER 112 113 113 SER SER B . n B 1 113 TYR 113 114 114 TYR TYR B . n B 1 114 ASN 114 115 115 ASN ASN B . n B 1 115 VAL 115 116 116 VAL VAL B . n B 1 116 ALA 116 117 117 ALA ALA B . n B 1 117 ASN 117 118 118 ASN ASN B . n B 1 118 ALA 118 119 119 ALA ALA B . n B 1 119 LYS 119 120 120 LYS LYS B . n B 1 120 GLY 120 121 121 GLY GLY B . n B 1 121 ARG 121 122 122 ARG ARG B . n B 1 122 ARG 122 123 123 ARG ARG B . n B 1 123 PHE 123 124 124 PHE PHE B . n B 1 124 ALA 124 125 125 ALA ALA B . n B 1 125 ILE 125 126 126 ILE ILE B . n B 1 126 GLU 126 127 127 GLU GLU B . n B 1 127 TYR 127 128 128 TYR TYR B . n B 1 128 THR 128 129 129 THR THR B . n B 1 129 VAL 129 130 130 VAL VAL B . n B 1 130 THR 130 131 131 THR THR B . n B 1 131 GLU 131 132 132 GLU GLU B . n B 1 132 GLY 132 133 133 GLY GLY B . n B 1 133 ASP 133 134 134 ASP ASP B . n B 1 134 ASN 134 135 135 ASN ASN B . n B 1 135 LEU 135 136 136 LEU LEU B . n B 1 136 LYS 136 137 137 LYS LYS B . n B 1 137 ALA 137 138 138 ALA ALA B . n B 1 138 ASN 138 139 139 ASN ASN B . n B 1 139 LEU 139 140 140 LEU LEU B . n B 1 140 ILE 140 141 141 ILE ILE B . n B 1 141 ILE 141 142 142 ILE ILE B . n B 1 142 GLY 142 143 143 GLY GLY B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 144 1 HOH HOH A . C 2 HOH 2 145 2 HOH HOH A . C 2 HOH 3 146 3 HOH HOH A . C 2 HOH 4 147 5 HOH HOH A . C 2 HOH 5 148 6 HOH HOH A . C 2 HOH 6 149 8 HOH HOH A . C 2 HOH 7 150 9 HOH HOH A . C 2 HOH 8 151 10 HOH HOH A . C 2 HOH 9 152 11 HOH HOH A . C 2 HOH 10 153 15 HOH HOH A . C 2 HOH 11 154 16 HOH HOH A . C 2 HOH 12 155 19 HOH HOH A . C 2 HOH 13 156 20 HOH HOH A . C 2 HOH 14 157 21 HOH HOH A . C 2 HOH 15 158 22 HOH HOH A . C 2 HOH 16 159 26 HOH HOH A . C 2 HOH 17 160 27 HOH HOH A . C 2 HOH 18 161 29 HOH HOH A . C 2 HOH 19 162 34 HOH HOH A . C 2 HOH 20 163 35 HOH HOH A . C 2 HOH 21 164 37 HOH HOH A . C 2 HOH 22 165 38 HOH HOH A . C 2 HOH 23 166 39 HOH HOH A . C 2 HOH 24 167 43 HOH HOH A . C 2 HOH 25 168 45 HOH HOH A . C 2 HOH 26 169 47 HOH HOH A . C 2 HOH 27 170 48 HOH HOH A . C 2 HOH 28 171 50 HOH HOH A . C 2 HOH 29 172 53 HOH HOH A . C 2 HOH 30 173 55 HOH HOH A . C 2 HOH 31 174 56 HOH HOH A . C 2 HOH 32 175 60 HOH HOH A . C 2 HOH 33 176 62 HOH HOH A . C 2 HOH 34 177 65 HOH HOH A . C 2 HOH 35 178 66 HOH HOH A . C 2 HOH 36 179 67 HOH HOH A . C 2 HOH 37 180 68 HOH HOH A . C 2 HOH 38 181 69 HOH HOH A . C 2 HOH 39 182 71 HOH HOH A . C 2 HOH 40 183 72 HOH HOH A . C 2 HOH 41 184 73 HOH HOH A . C 2 HOH 42 185 74 HOH HOH A . C 2 HOH 43 186 76 HOH HOH A . C 2 HOH 44 187 77 HOH HOH A . C 2 HOH 45 188 78 HOH HOH A . C 2 HOH 46 189 79 HOH HOH A . C 2 HOH 47 190 81 HOH HOH A . C 2 HOH 48 191 82 HOH HOH A . C 2 HOH 49 192 84 HOH HOH A . C 2 HOH 50 193 86 HOH HOH A . C 2 HOH 51 194 90 HOH HOH A . C 2 HOH 52 195 91 HOH HOH A . C 2 HOH 53 196 92 HOH HOH A . C 2 HOH 54 197 95 HOH HOH A . C 2 HOH 55 198 96 HOH HOH A . C 2 HOH 56 199 97 HOH HOH A . C 2 HOH 57 200 98 HOH HOH A . C 2 HOH 58 201 103 HOH HOH A . C 2 HOH 59 202 104 HOH HOH A . C 2 HOH 60 203 107 HOH HOH A . C 2 HOH 61 204 108 HOH HOH A . C 2 HOH 62 205 114 HOH HOH A . C 2 HOH 63 206 115 HOH HOH A . C 2 HOH 64 207 117 HOH HOH A . C 2 HOH 65 208 118 HOH HOH A . C 2 HOH 66 209 119 HOH HOH A . C 2 HOH 67 210 120 HOH HOH A . C 2 HOH 68 211 121 HOH HOH A . C 2 HOH 69 212 122 HOH HOH A . C 2 HOH 70 213 123 HOH HOH A . C 2 HOH 71 214 124 HOH HOH A . C 2 HOH 72 215 125 HOH HOH A . C 2 HOH 73 216 126 HOH HOH A . C 2 HOH 74 217 131 HOH HOH A . C 2 HOH 75 218 132 HOH HOH A . C 2 HOH 76 219 133 HOH HOH A . C 2 HOH 77 220 135 HOH HOH A . C 2 HOH 78 221 137 HOH HOH A . C 2 HOH 79 222 139 HOH HOH A . C 2 HOH 80 223 144 HOH HOH A . C 2 HOH 81 224 149 HOH HOH A . C 2 HOH 82 225 151 HOH HOH A . C 2 HOH 83 226 155 HOH HOH A . C 2 HOH 84 227 156 HOH HOH A . C 2 HOH 85 228 157 HOH HOH A . C 2 HOH 86 229 159 HOH HOH A . C 2 HOH 87 230 161 HOH HOH A . C 2 HOH 88 231 162 HOH HOH A . C 2 HOH 89 232 165 HOH HOH A . C 2 HOH 90 233 167 HOH HOH A . C 2 HOH 91 234 168 HOH HOH A . D 2 HOH 1 144 4 HOH HOH B . D 2 HOH 2 145 7 HOH HOH B . D 2 HOH 3 146 12 HOH HOH B . D 2 HOH 4 147 13 HOH HOH B . D 2 HOH 5 148 14 HOH HOH B . D 2 HOH 6 149 17 HOH HOH B . D 2 HOH 7 150 18 HOH HOH B . D 2 HOH 8 151 23 HOH HOH B . D 2 HOH 9 152 24 HOH HOH B . D 2 HOH 10 153 25 HOH HOH B . D 2 HOH 11 154 28 HOH HOH B . D 2 HOH 12 155 30 HOH HOH B . D 2 HOH 13 156 31 HOH HOH B . D 2 HOH 14 157 32 HOH HOH B . D 2 HOH 15 158 33 HOH HOH B . D 2 HOH 16 159 36 HOH HOH B . D 2 HOH 17 160 40 HOH HOH B . D 2 HOH 18 161 41 HOH HOH B . D 2 HOH 19 162 42 HOH HOH B . D 2 HOH 20 163 44 HOH HOH B . D 2 HOH 21 164 46 HOH HOH B . D 2 HOH 22 165 49 HOH HOH B . D 2 HOH 23 166 51 HOH HOH B . D 2 HOH 24 167 52 HOH HOH B . D 2 HOH 25 168 54 HOH HOH B . D 2 HOH 26 169 57 HOH HOH B . D 2 HOH 27 170 58 HOH HOH B . D 2 HOH 28 171 59 HOH HOH B . D 2 HOH 29 172 61 HOH HOH B . D 2 HOH 30 173 63 HOH HOH B . D 2 HOH 31 174 64 HOH HOH B . D 2 HOH 32 175 70 HOH HOH B . D 2 HOH 33 176 75 HOH HOH B . D 2 HOH 34 177 80 HOH HOH B . D 2 HOH 35 178 83 HOH HOH B . D 2 HOH 36 179 85 HOH HOH B . D 2 HOH 37 180 87 HOH HOH B . D 2 HOH 38 181 88 HOH HOH B . D 2 HOH 39 182 89 HOH HOH B . D 2 HOH 40 183 93 HOH HOH B . D 2 HOH 41 184 94 HOH HOH B . D 2 HOH 42 185 99 HOH HOH B . D 2 HOH 43 186 100 HOH HOH B . D 2 HOH 44 187 101 HOH HOH B . D 2 HOH 45 188 102 HOH HOH B . D 2 HOH 46 189 105 HOH HOH B . D 2 HOH 47 190 106 HOH HOH B . D 2 HOH 48 191 109 HOH HOH B . D 2 HOH 49 192 110 HOH HOH B . D 2 HOH 50 193 111 HOH HOH B . D 2 HOH 51 194 112 HOH HOH B . D 2 HOH 52 195 113 HOH HOH B . D 2 HOH 53 196 116 HOH HOH B . D 2 HOH 54 197 127 HOH HOH B . D 2 HOH 55 198 128 HOH HOH B . D 2 HOH 56 199 129 HOH HOH B . D 2 HOH 57 200 130 HOH HOH B . D 2 HOH 58 201 134 HOH HOH B . D 2 HOH 59 202 136 HOH HOH B . D 2 HOH 60 203 138 HOH HOH B . D 2 HOH 61 204 140 HOH HOH B . D 2 HOH 62 205 141 HOH HOH B . D 2 HOH 63 206 142 HOH HOH B . D 2 HOH 64 207 143 HOH HOH B . D 2 HOH 65 208 145 HOH HOH B . D 2 HOH 66 209 146 HOH HOH B . D 2 HOH 67 210 147 HOH HOH B . D 2 HOH 68 211 148 HOH HOH B . D 2 HOH 69 212 150 HOH HOH B . D 2 HOH 70 213 152 HOH HOH B . D 2 HOH 71 214 153 HOH HOH B . D 2 HOH 72 215 154 HOH HOH B . D 2 HOH 73 216 158 HOH HOH B . D 2 HOH 74 217 160 HOH HOH B . D 2 HOH 75 218 163 HOH HOH B . D 2 HOH 76 219 164 HOH HOH B . D 2 HOH 77 220 166 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7560 ? 1 MORE -20 ? 1 'SSA (A^2)' 21340 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 91.9350000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 37.7150000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-12-21 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 MOSFLM 'data reduction' . ? 2 CCP4 'data scaling' '(SCALA)' ? 3 autoSHARP phasing . ? 4 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 62 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ASP _pdbx_validate_rmsd_angle.auth_seq_id_2 62 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OD2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ASP _pdbx_validate_rmsd_angle.auth_seq_id_3 62 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.71 _pdbx_validate_rmsd_angle.angle_target_value 118.30 _pdbx_validate_rmsd_angle.angle_deviation 5.41 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 82 ? ? -128.75 -168.14 2 1 PRO B 14 ? ? -76.03 48.47 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #