HEADER HYDROLASE 30-NOV-04 1Y44 TITLE CRYSTAL STRUCTURE OF RNASE Z COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE Z; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RNASE Z, TRNA 3 ENDONUCLEASE, ZIPD, 3'TRNASE, ELAC; COMPND 5 EC: 3.1.26.11; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: RNZ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 LAMBDADE3 PRIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ZINC-DEPENDENT METAL HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR I.L.DE LA SIERRA-GALLAY,O.PELLEGRINI,C.CONDON REVDAT 6 06-NOV-24 1Y44 1 REMARK REVDAT 5 20-OCT-21 1Y44 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 1Y44 1 VERSN REVDAT 3 24-FEB-09 1Y44 1 VERSN REVDAT 2 08-FEB-05 1Y44 1 JRNL REVDAT 1 25-JAN-05 1Y44 0 JRNL AUTH I.L.DE LA SIERRA-GALLAY,O.PELLEGRINI,C.CONDON JRNL TITL STRUCTURAL BASIS FOR SUBSTRATE BINDING, CLEAVAGE AND JRNL TITL 2 ALLOSTERY IN THE TRNA MATURASE RNASE Z. JRNL REF NATURE V. 433 657 2005 JRNL REFN ISSN 0028-0836 JRNL PMID 15654328 JRNL DOI 10.1038/NATURE03284 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH O.PELLEGRINI,J.NEZZAR,A.MARCHFELDER,H.PUTZER,C.CONDON REMARK 1 TITL ENDONUCLEOLYTIC PROCESSING OF CCA-LESS TRNA PRECURSORS BY REMARK 1 TITL 2 RNASE Z IN BACILLUS SUBTILIS REMARK 1 REF EMBO J. V. 22 4534 2003 REMARK 1 REFN ISSN 0261-4189 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2976258.970 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.1 REMARK 3 NUMBER OF REFLECTIONS : 72532 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 7097 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9969 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1053 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4401 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 176 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.60000 REMARK 3 B22 (A**2) : 6.26000 REMARK 3 B33 (A**2) : -10.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.28 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.33 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.800 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.450 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.360 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.370 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.440 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 53.50 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : LIGAND_XPLOR_PAR.TXT REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : LIGAND_XPLOR_TOP.TXT REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Y44 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1000031091. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9766, 0.9796, 0.9797 REMARK 200 MONOCHROMATOR : 2 SILICON CRYSTALS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85742 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 2.320 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.41500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.490 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS 1.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG MME 2000, AMMONIUM SULFATE, SODIUM REMARK 280 -MES, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K, PH 6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.95500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.95500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 21.49000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 94.16500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 21.49000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 94.16500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 88.95500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 21.49000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 94.16500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 88.95500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 21.49000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 94.16500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -105.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 159 REMARK 465 ALA A 160 REMARK 465 ASP A 161 REMARK 465 VAL A 162 REMARK 465 LEU A 163 REMARK 465 LYS A 164 REMARK 465 GLU A 165 REMARK 465 MSE A 166 REMARK 465 ASN A 167 REMARK 465 ILE A 168 REMARK 465 PRO A 169 REMARK 465 PRO A 170 REMARK 465 GLY A 171 REMARK 465 PRO A 172 REMARK 465 VAL A 173 REMARK 465 TYR A 174 REMARK 465 GLN A 175 REMARK 465 LYS A 176 REMARK 465 ILE A 177 REMARK 465 LYS A 178 REMARK 465 LYS A 179 REMARK 465 GLY A 180 REMARK 465 GLU A 181 REMARK 465 THR A 182 REMARK 465 VAL A 183 REMARK 465 THR A 184 REMARK 465 LEU A 185 REMARK 465 GLU A 186 REMARK 465 ASP A 187 REMARK 465 GLY A 188 REMARK 465 ARG A 189 REMARK 465 ILE A 190 REMARK 465 ILE A 191 REMARK 465 ASN A 192 REMARK 465 GLY A 193 REMARK 465 ASN A 194 REMARK 465 ASP A 195 REMARK 465 PHE A 196 REMARK 465 LYS A 308 REMARK 465 LEU A 309 REMARK 465 ALA A 310 REMARK 465 ALA A 311 REMARK 465 ALA A 312 REMARK 465 LEU A 313 REMARK 465 GLU A 314 REMARK 465 HIS A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 465 GLU B 237 REMARK 465 ASP B 238 REMARK 465 ARG B 239 REMARK 465 LYS B 240 REMARK 465 LEU B 241 REMARK 465 ALA B 242 REMARK 465 TYR B 243 REMARK 465 ASP B 244 REMARK 465 TYR B 245 REMARK 465 TYR B 246 REMARK 465 LYS B 308 REMARK 465 LEU B 309 REMARK 465 ALA B 310 REMARK 465 ALA B 311 REMARK 465 ALA B 312 REMARK 465 LEU B 313 REMARK 465 GLU B 314 REMARK 465 HIS B 315 REMARK 465 HIS B 316 REMARK 465 HIS B 317 REMARK 465 HIS B 318 REMARK 465 HIS B 319 REMARK 465 HIS B 320 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 236 CG CD CE NZ REMARK 470 HIS B 247 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 21 123.97 -179.93 REMARK 500 ASP A 37 155.89 72.56 REMARK 500 CYS A 38 79.20 -152.32 REMARK 500 VAL A 138 -169.25 -110.76 REMARK 500 HIS A 140 14.06 -143.56 REMARK 500 THR A 212 161.24 178.95 REMARK 500 ASP A 238 44.60 -108.08 REMARK 500 ALA A 272 -3.20 -57.53 REMARK 500 SER B 21 128.13 179.49 REMARK 500 ASP B 37 159.02 74.04 REMARK 500 CYS B 38 74.07 -156.13 REMARK 500 TYR B 70 -7.62 -59.54 REMARK 500 HIS B 140 -68.36 -25.23 REMARK 500 GLU B 143 42.73 -87.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 63 NE2 REMARK 620 2 HIS A 65 ND1 90.7 REMARK 620 3 HIS A 140 NE2 94.7 82.3 REMARK 620 4 ASP A 211 OD2 89.8 176.7 100.8 REMARK 620 5 PO4 A 945 O2 170.7 95.2 93.2 83.9 REMARK 620 6 HOH A1007 O 92.0 90.3 170.1 86.5 80.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 67 OD2 REMARK 620 2 HIS A 68 NE2 87.9 REMARK 620 3 ASP A 211 OD2 166.5 96.6 REMARK 620 4 HIS A 269 NE2 94.0 107.3 96.8 REMARK 620 5 PO4 A 945 O3 80.7 162.0 91.6 87.6 REMARK 620 6 HOH A1007 O 88.4 96.2 78.4 156.4 69.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 945 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 603 DBREF 1Y44 A 1 307 UNP P54548 RNZ_BACSU 1 307 DBREF 1Y44 B 1 307 UNP P54548 RNZ_BACSU 1 307 SEQADV 1Y44 MSE A 1 UNP P54548 MET 1 MODIFIED RESIDUE SEQADV 1Y44 MSE A 46 UNP P54548 ILE 46 ENGINEERED MUTATION SEQADV 1Y44 MSE A 64 UNP P54548 MET 64 MODIFIED RESIDUE SEQADV 1Y44 MSE A 166 UNP P54548 MET 166 MODIFIED RESIDUE SEQADV 1Y44 MSE A 228 UNP P54548 LEU 228 ENGINEERED MUTATION SEQADV 1Y44 LYS A 308 UNP P54548 CLONING ARTIFACT SEQADV 1Y44 LEU A 309 UNP P54548 CLONING ARTIFACT SEQADV 1Y44 ALA A 310 UNP P54548 CLONING ARTIFACT SEQADV 1Y44 ALA A 311 UNP P54548 CLONING ARTIFACT SEQADV 1Y44 ALA A 312 UNP P54548 CLONING ARTIFACT SEQADV 1Y44 LEU A 313 UNP P54548 CLONING ARTIFACT SEQADV 1Y44 GLU A 314 UNP P54548 CLONING ARTIFACT SEQADV 1Y44 HIS A 315 UNP P54548 CLONING ARTIFACT SEQADV 1Y44 HIS A 316 UNP P54548 CLONING ARTIFACT SEQADV 1Y44 HIS A 317 UNP P54548 CLONING ARTIFACT SEQADV 1Y44 HIS A 318 UNP P54548 CLONING ARTIFACT SEQADV 1Y44 HIS A 319 UNP P54548 CLONING ARTIFACT SEQADV 1Y44 HIS A 320 UNP P54548 CLONING ARTIFACT SEQADV 1Y44 MSE B 1 UNP P54548 MET 1 MODIFIED RESIDUE SEQADV 1Y44 MSE B 46 UNP P54548 ILE 46 ENGINEERED MUTATION SEQADV 1Y44 MSE B 64 UNP P54548 MET 64 MODIFIED RESIDUE SEQADV 1Y44 MSE B 166 UNP P54548 MET 166 MODIFIED RESIDUE SEQADV 1Y44 MSE B 228 UNP P54548 LEU 228 ENGINEERED MUTATION SEQADV 1Y44 LYS B 308 UNP P54548 CLONING ARTIFACT SEQADV 1Y44 LEU B 309 UNP P54548 CLONING ARTIFACT SEQADV 1Y44 ALA B 310 UNP P54548 CLONING ARTIFACT SEQADV 1Y44 ALA B 311 UNP P54548 CLONING ARTIFACT SEQADV 1Y44 ALA B 312 UNP P54548 CLONING ARTIFACT SEQADV 1Y44 LEU B 313 UNP P54548 CLONING ARTIFACT SEQADV 1Y44 GLU B 314 UNP P54548 CLONING ARTIFACT SEQADV 1Y44 HIS B 315 UNP P54548 CLONING ARTIFACT SEQADV 1Y44 HIS B 316 UNP P54548 CLONING ARTIFACT SEQADV 1Y44 HIS B 317 UNP P54548 CLONING ARTIFACT SEQADV 1Y44 HIS B 318 UNP P54548 CLONING ARTIFACT SEQADV 1Y44 HIS B 319 UNP P54548 CLONING ARTIFACT SEQADV 1Y44 HIS B 320 UNP P54548 CLONING ARTIFACT SEQRES 1 A 320 MSE GLU LEU LEU PHE LEU GLY THR GLY ALA GLY ILE PRO SEQRES 2 A 320 ALA LYS ALA ARG ASN VAL THR SER VAL ALA LEU LYS LEU SEQRES 3 A 320 LEU GLU GLU ARG ARG SER VAL TRP LEU PHE ASP CYS GLY SEQRES 4 A 320 GLU ALA THR GLN HIS GLN MSE LEU HIS THR THR ILE LYS SEQRES 5 A 320 PRO ARG LYS ILE GLU LYS ILE PHE ILE THR HIS MSE HIS SEQRES 6 A 320 GLY ASP HIS VAL TYR GLY LEU PRO GLY LEU LEU GLY SER SEQRES 7 A 320 ARG SER PHE GLN GLY GLY GLU ASP GLU LEU THR VAL TYR SEQRES 8 A 320 GLY PRO LYS GLY ILE LYS ALA PHE ILE GLU THR SER LEU SEQRES 9 A 320 ALA VAL THR LYS THR HIS LEU THR TYR PRO LEU ALA ILE SEQRES 10 A 320 GLN GLU ILE GLU GLU GLY ILE VAL PHE GLU ASP ASP GLN SEQRES 11 A 320 PHE ILE VAL THR ALA VAL SER VAL ILE HIS GLY VAL GLU SEQRES 12 A 320 ALA PHE GLY TYR ARG VAL GLN GLU LYS ASP VAL PRO GLY SEQRES 13 A 320 SER LEU LYS ALA ASP VAL LEU LYS GLU MSE ASN ILE PRO SEQRES 14 A 320 PRO GLY PRO VAL TYR GLN LYS ILE LYS LYS GLY GLU THR SEQRES 15 A 320 VAL THR LEU GLU ASP GLY ARG ILE ILE ASN GLY ASN ASP SEQRES 16 A 320 PHE LEU GLU PRO PRO LYS LYS GLY ARG SER VAL VAL PHE SEQRES 17 A 320 SER GLY ASP THR ARG VAL SER ASP LYS LEU LYS GLU LEU SEQRES 18 A 320 ALA ARG ASP CYS ASP VAL MSE VAL HIS GLU ALA THR PHE SEQRES 19 A 320 ALA LYS GLU ASP ARG LYS LEU ALA TYR ASP TYR TYR HIS SEQRES 20 A 320 SER THR THR GLU GLN ALA ALA VAL THR ALA LYS GLU ALA SEQRES 21 A 320 ARG ALA LYS GLN LEU ILE LEU THR HIS ILE SER ALA ARG SEQRES 22 A 320 TYR GLN GLY ASP ALA SER LEU GLU LEU GLN LYS GLU ALA SEQRES 23 A 320 VAL ASP VAL PHE PRO ASN SER VAL ALA ALA TYR ASP PHE SEQRES 24 A 320 LEU GLU VAL ASN VAL PRO ARG GLY LYS LEU ALA ALA ALA SEQRES 25 A 320 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 320 MSE GLU LEU LEU PHE LEU GLY THR GLY ALA GLY ILE PRO SEQRES 2 B 320 ALA LYS ALA ARG ASN VAL THR SER VAL ALA LEU LYS LEU SEQRES 3 B 320 LEU GLU GLU ARG ARG SER VAL TRP LEU PHE ASP CYS GLY SEQRES 4 B 320 GLU ALA THR GLN HIS GLN MSE LEU HIS THR THR ILE LYS SEQRES 5 B 320 PRO ARG LYS ILE GLU LYS ILE PHE ILE THR HIS MSE HIS SEQRES 6 B 320 GLY ASP HIS VAL TYR GLY LEU PRO GLY LEU LEU GLY SER SEQRES 7 B 320 ARG SER PHE GLN GLY GLY GLU ASP GLU LEU THR VAL TYR SEQRES 8 B 320 GLY PRO LYS GLY ILE LYS ALA PHE ILE GLU THR SER LEU SEQRES 9 B 320 ALA VAL THR LYS THR HIS LEU THR TYR PRO LEU ALA ILE SEQRES 10 B 320 GLN GLU ILE GLU GLU GLY ILE VAL PHE GLU ASP ASP GLN SEQRES 11 B 320 PHE ILE VAL THR ALA VAL SER VAL ILE HIS GLY VAL GLU SEQRES 12 B 320 ALA PHE GLY TYR ARG VAL GLN GLU LYS ASP VAL PRO GLY SEQRES 13 B 320 SER LEU LYS ALA ASP VAL LEU LYS GLU MSE ASN ILE PRO SEQRES 14 B 320 PRO GLY PRO VAL TYR GLN LYS ILE LYS LYS GLY GLU THR SEQRES 15 B 320 VAL THR LEU GLU ASP GLY ARG ILE ILE ASN GLY ASN ASP SEQRES 16 B 320 PHE LEU GLU PRO PRO LYS LYS GLY ARG SER VAL VAL PHE SEQRES 17 B 320 SER GLY ASP THR ARG VAL SER ASP LYS LEU LYS GLU LEU SEQRES 18 B 320 ALA ARG ASP CYS ASP VAL MSE VAL HIS GLU ALA THR PHE SEQRES 19 B 320 ALA LYS GLU ASP ARG LYS LEU ALA TYR ASP TYR TYR HIS SEQRES 20 B 320 SER THR THR GLU GLN ALA ALA VAL THR ALA LYS GLU ALA SEQRES 21 B 320 ARG ALA LYS GLN LEU ILE LEU THR HIS ILE SER ALA ARG SEQRES 22 B 320 TYR GLN GLY ASP ALA SER LEU GLU LEU GLN LYS GLU ALA SEQRES 23 B 320 VAL ASP VAL PHE PRO ASN SER VAL ALA ALA TYR ASP PHE SEQRES 24 B 320 LEU GLU VAL ASN VAL PRO ARG GLY LYS LEU ALA ALA ALA SEQRES 25 B 320 LEU GLU HIS HIS HIS HIS HIS HIS MODRES 1Y44 MSE A 1 MET SELENOMETHIONINE MODRES 1Y44 MSE A 46 MET SELENOMETHIONINE MODRES 1Y44 MSE A 64 MET SELENOMETHIONINE MODRES 1Y44 MSE A 228 MET SELENOMETHIONINE MODRES 1Y44 MSE B 1 MET SELENOMETHIONINE MODRES 1Y44 MSE B 46 MET SELENOMETHIONINE MODRES 1Y44 MSE B 64 MET SELENOMETHIONINE MODRES 1Y44 MSE B 166 MET SELENOMETHIONINE MODRES 1Y44 MSE B 228 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 46 8 HET MSE A 64 8 HET MSE A 228 8 HET MSE B 1 8 HET MSE B 46 8 HET MSE B 64 8 HET MSE B 166 8 HET MSE B 228 8 HET ZN A 400 1 HET ZN A 401 1 HET PO4 A 945 5 HET GOL A 602 6 HET GOL A 603 6 HET MES B 801 12 HET GOL B 601 6 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 3 ZN 2(ZN 2+) FORMUL 5 PO4 O4 P 3- FORMUL 6 GOL 3(C3 H8 O3) FORMUL 8 MES C6 H13 N O4 S FORMUL 10 HOH *176(H2 O) HELIX 1 1 ALA A 41 LEU A 47 1 7 HELIX 2 2 LYS A 52 ARG A 54 5 3 HELIX 3 3 HIS A 65 VAL A 69 5 5 HELIX 4 4 GLY A 71 GLN A 82 1 12 HELIX 5 5 GLY A 95 THR A 107 1 13 HELIX 6 6 SER A 215 ALA A 222 1 8 HELIX 7 7 ASP A 238 TYR A 245 1 8 HELIX 8 8 THR A 249 ARG A 261 1 13 HELIX 9 9 ASP A 277 PHE A 290 1 14 HELIX 10 10 LEU B 27 ARG B 31 1 5 HELIX 11 11 ALA B 41 LEU B 47 1 7 HELIX 12 12 LYS B 52 ARG B 54 5 3 HELIX 13 13 HIS B 65 TYR B 70 1 6 HELIX 14 14 GLY B 71 GLN B 82 1 12 HELIX 15 15 GLY B 95 THR B 107 1 13 HELIX 16 16 LYS B 159 MSE B 166 1 8 HELIX 17 17 GLY B 171 LYS B 179 1 9 HELIX 18 18 ASN B 194 LEU B 197 5 4 HELIX 19 19 SER B 215 ALA B 222 1 8 HELIX 20 20 SER B 248 ARG B 261 1 14 HELIX 21 21 GLY B 276 ASP B 288 1 13 SHEET 1 A 7 LEU A 115 GLU A 119 0 SHEET 2 A 7 LEU A 88 GLY A 92 1 N VAL A 90 O GLN A 118 SHEET 3 A 7 ILE A 56 PHE A 60 1 N ILE A 59 O TYR A 91 SHEET 4 A 7 VAL A 33 PHE A 36 1 N LEU A 35 O PHE A 60 SHEET 5 A 7 SER A 21 LYS A 25 -1 N LEU A 24 O TRP A 34 SHEET 6 A 7 GLU A 2 GLY A 7 -1 N LEU A 4 O ALA A 23 SHEET 7 A 7 GLU A 301 ASN A 303 -1 O VAL A 302 N LEU A 3 SHEET 1 B 7 GLY A 123 GLU A 127 0 SHEET 2 B 7 PHE A 131 SER A 137 -1 O ALA A 135 N GLY A 123 SHEET 3 B 7 PHE A 145 GLU A 151 -1 O GLY A 146 N VAL A 136 SHEET 4 B 7 SER A 205 PHE A 208 -1 O VAL A 206 N VAL A 149 SHEET 5 B 7 VAL A 227 GLU A 231 1 O VAL A 229 N VAL A 207 SHEET 6 B 7 GLN A 264 THR A 268 1 O ILE A 266 N MSE A 228 SHEET 7 B 7 SER A 293 ALA A 295 1 O VAL A 294 N LEU A 267 SHEET 1 C 7 LEU B 115 GLU B 119 0 SHEET 2 C 7 LEU B 88 GLY B 92 1 N VAL B 90 O GLN B 118 SHEET 3 C 7 ILE B 56 PHE B 60 1 N ILE B 59 O TYR B 91 SHEET 4 C 7 SER B 32 PHE B 36 1 N LEU B 35 O PHE B 60 SHEET 5 C 7 SER B 21 LEU B 26 -1 N LEU B 24 O TRP B 34 SHEET 6 C 7 GLU B 2 GLY B 7 -1 N LEU B 4 O ALA B 23 SHEET 7 C 7 GLU B 301 ASN B 303 -1 O VAL B 302 N LEU B 3 SHEET 1 D 7 GLY B 123 GLU B 127 0 SHEET 2 D 7 PHE B 131 SER B 137 -1 O VAL B 133 N PHE B 126 SHEET 3 D 7 PHE B 145 GLU B 151 -1 O GLY B 146 N VAL B 136 SHEET 4 D 7 SER B 205 PHE B 208 -1 O PHE B 208 N TYR B 147 SHEET 5 D 7 VAL B 227 GLU B 231 1 O VAL B 229 N VAL B 207 SHEET 6 D 7 GLN B 264 THR B 268 1 O THR B 268 N HIS B 230 SHEET 7 D 7 SER B 293 ALA B 295 1 O VAL B 294 N LEU B 267 SHEET 1 E 2 THR B 182 THR B 184 0 SHEET 2 E 2 ILE B 190 ASN B 192 -1 O ILE B 191 N VAL B 183 LINK C MSE A 1 N GLU A 2 1555 1555 1.33 LINK C GLN A 45 N MSE A 46 1555 1555 1.33 LINK C MSE A 46 N LEU A 47 1555 1555 1.33 LINK C HIS A 63 N MSE A 64 1555 1555 1.33 LINK C MSE A 64 N HIS A 65 1555 1555 1.33 LINK C VAL A 227 N MSE A 228 1555 1555 1.33 LINK C MSE A 228 N VAL A 229 1555 1555 1.33 LINK C MSE B 1 N GLU B 2 1555 1555 1.33 LINK C GLN B 45 N MSE B 46 1555 1555 1.33 LINK C MSE B 46 N LEU B 47 1555 1555 1.33 LINK C HIS B 63 N MSE B 64 1555 1555 1.33 LINK C MSE B 64 N HIS B 65 1555 1555 1.32 LINK C GLU B 165 N MSE B 166 1555 1555 1.33 LINK C MSE B 166 N ASN B 167 1555 1555 1.33 LINK C VAL B 227 N MSE B 228 1555 1555 1.33 LINK C MSE B 228 N VAL B 229 1555 1555 1.33 LINK NE2 HIS A 63 ZN ZN A 400 1555 1555 2.37 LINK ND1 HIS A 65 ZN ZN A 400 1555 1555 2.25 LINK OD2 ASP A 67 ZN ZN A 401 1555 1555 2.46 LINK NE2 HIS A 68 ZN ZN A 401 1555 1555 2.26 LINK NE2 HIS A 140 ZN ZN A 400 1555 1555 2.26 LINK OD2 ASP A 211 ZN ZN A 400 1555 1555 2.24 LINK OD2 ASP A 211 ZN ZN A 401 1555 1555 2.24 LINK NE2 HIS A 269 ZN ZN A 401 1555 1555 2.29 LINK ZN ZN A 400 O2 PO4 A 945 1555 1555 2.27 LINK ZN ZN A 400 O HOH A1007 1555 1555 1.96 LINK ZN ZN A 401 O3 PO4 A 945 1555 1555 2.46 LINK ZN ZN A 401 O HOH A1007 1555 1555 2.32 SITE 1 AC1 7 HIS A 63 HIS A 65 HIS A 140 ASP A 211 SITE 2 AC1 7 ZN A 401 PO4 A 945 HOH A1007 SITE 1 AC2 7 ASP A 67 HIS A 68 ASP A 211 HIS A 269 SITE 2 AC2 7 ZN A 400 PO4 A 945 HOH A1007 SITE 1 AC3 11 GLY A 11 HIS A 65 ASP A 67 HIS A 140 SITE 2 AC3 11 ASP A 211 HIS A 247 HIS A 269 ZN A 400 SITE 3 AC3 11 ZN A 401 HOH A 948 HOH A1007 SITE 1 AC4 6 ARG B 31 ARG B 54 LYS B 55 GLU B 57 SITE 2 AC4 6 ASP B 86 HOH B 859 SITE 1 AC5 6 LYS B 176 VAL B 183 THR B 184 PRO B 291 SITE 2 AC5 6 ASN B 292 HOH B 861 SITE 1 AC6 2 HIS A 48 PHE A 299 SITE 1 AC7 9 ARG A 31 ARG A 54 LYS A 55 ILE A 56 SITE 2 AC7 9 GLU A 57 ARG A 79 ASP A 86 GLU A 87 SITE 3 AC7 9 HOH A 983 CRYST1 42.980 188.330 177.910 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023267 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005310 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005621 0.00000 HETATM 1 N MSE A 1 9.927 7.782 36.060 1.00 41.77 N HETATM 2 CA MSE A 1 9.026 7.634 34.879 1.00 42.15 C HETATM 3 C MSE A 1 9.804 7.178 33.652 1.00 41.66 C HETATM 4 O MSE A 1 10.690 7.885 33.174 1.00 41.22 O HETATM 5 CB MSE A 1 8.332 8.960 34.567 1.00 44.52 C HETATM 6 CG MSE A 1 7.296 8.868 33.455 1.00 47.88 C HETATM 7 SE MSE A 1 6.611 10.600 32.874 1.00 54.46 SE HETATM 8 CE MSE A 1 5.439 10.983 34.365 1.00 50.09 C