HEADER CHAPERONE 01-DEC-04 1Y4S TITLE CONFORMATION REARRANGEMENT OF HEAT SHOCK PROTEIN 90 UPON ADP BINDING COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN HTPG; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-559; COMPND 5 SYNONYM: HEAT SHOCK PROTEIN HTPG, HIGH TEMPERATURE PROTEIN G, HEAT COMPND 6 SHOCK PROTEIN C62.5; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: HTPG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBJ935 KEYWDS HSP90, MOLECULAR CHAPERONE, HTPG, ATPASE, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR Q.HUAI,H.WANG,Y.LIU,H.KIM,D.TOFT,H.KE REVDAT 3 14-FEB-24 1Y4S 1 REMARK LINK REVDAT 2 24-FEB-09 1Y4S 1 VERSN REVDAT 1 19-APR-05 1Y4S 0 JRNL AUTH Q.HUAI,H.WANG,Y.LIU,H.Y.KIM,D.TOFT,H.KE JRNL TITL STRUCTURES OF THE N-TERMINAL AND MIDDLE DOMAINS OF E. COLI JRNL TITL 2 HSP90 AND CONFORMATION CHANGES UPON ADP BINDING. JRNL REF STRUCTURE V. 13 579 2005 JRNL REFN ISSN 0969-2126 JRNL PMID 15837196 JRNL DOI 10.1016/J.STR.2004.12.018 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 29165 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.269 REMARK 3 FREE R VALUE : 0.314 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7728 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.094 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Y4S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1000031115. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791, 0.9792, 0.94 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29771 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.23400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG3350, 0.1M HEPES, 10% GLYCEROL, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 36.25000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.09000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.25000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.09000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 109 REMARK 465 GLY A 110 REMARK 465 SER A 111 REMARK 465 ASP A 112 REMARK 465 GLN A 113 REMARK 465 ALA A 114 REMARK 465 LYS A 115 REMARK 465 ASP A 116 REMARK 465 SER A 484 REMARK 465 LYS A 485 REMARK 465 VAL A 486 REMARK 465 ASP A 487 REMARK 465 GLU A 488 REMARK 465 SER A 489 REMARK 465 LEU A 490 REMARK 465 GLU A 491 REMARK 465 LYS A 492 REMARK 465 LEU A 493 REMARK 465 ALA A 494 REMARK 465 ASP A 495 REMARK 465 GLU A 496 REMARK 465 VAL A 497 REMARK 465 ASP A 498 REMARK 465 GLU A 499 REMARK 465 SER A 500 REMARK 465 ALA A 501 REMARK 465 LYS A 502 REMARK 465 GLU A 503 REMARK 465 ALA A 504 REMARK 465 GLU A 505 REMARK 465 LYS A 506 REMARK 465 ALA A 507 REMARK 465 LEU A 508 REMARK 465 THR A 509 REMARK 465 PRO A 510 REMARK 465 PHE A 511 REMARK 465 ILE A 512 REMARK 465 ASP A 513 REMARK 465 ARG A 514 REMARK 465 VAL A 515 REMARK 465 LYS A 516 REMARK 465 ALA A 517 REMARK 465 LEU A 518 REMARK 465 LEU A 519 REMARK 465 GLY A 520 REMARK 465 GLU A 521 REMARK 465 ARG A 522 REMARK 465 VAL A 523 REMARK 465 LYS A 524 REMARK 465 ASP A 525 REMARK 465 VAL A 526 REMARK 465 ARG A 527 REMARK 465 LEU A 528 REMARK 465 THR A 529 REMARK 465 HIS A 530 REMARK 465 ARG A 531 REMARK 465 LEU A 532 REMARK 465 THR A 533 REMARK 465 ASP A 534 REMARK 465 THR A 535 REMARK 465 PRO A 536 REMARK 465 ALA A 537 REMARK 465 ILE A 538 REMARK 465 VAL A 539 REMARK 465 SER A 540 REMARK 465 THR A 541 REMARK 465 ASP A 542 REMARK 465 ALA A 543 REMARK 465 ASP A 544 REMARK 465 GLU A 545 REMARK 465 MET A 546 REMARK 465 SER A 547 REMARK 465 THR A 548 REMARK 465 GLN A 549 REMARK 465 MET A 550 REMARK 465 ALA A 551 REMARK 465 LYS A 552 REMARK 465 LEU A 553 REMARK 465 PHE A 554 REMARK 465 ALA A 555 REMARK 465 ALA A 556 REMARK 465 ALA A 557 REMARK 465 GLY A 558 REMARK 465 GLN A 559 REMARK 465 LEU B 109 REMARK 465 GLY B 110 REMARK 465 SER B 111 REMARK 465 ASP B 112 REMARK 465 GLN B 113 REMARK 465 ALA B 114 REMARK 465 LYS B 115 REMARK 465 ASP B 116 REMARK 465 SER B 484 REMARK 465 LYS B 485 REMARK 465 VAL B 486 REMARK 465 ASP B 487 REMARK 465 GLU B 488 REMARK 465 SER B 489 REMARK 465 LEU B 490 REMARK 465 GLU B 491 REMARK 465 LYS B 492 REMARK 465 LEU B 493 REMARK 465 ALA B 494 REMARK 465 ASP B 495 REMARK 465 GLU B 496 REMARK 465 VAL B 497 REMARK 465 ASP B 498 REMARK 465 GLU B 499 REMARK 465 SER B 500 REMARK 465 ALA B 501 REMARK 465 LYS B 502 REMARK 465 GLU B 503 REMARK 465 ALA B 504 REMARK 465 GLU B 505 REMARK 465 LYS B 506 REMARK 465 ALA B 507 REMARK 465 LEU B 508 REMARK 465 THR B 509 REMARK 465 PRO B 510 REMARK 465 PHE B 511 REMARK 465 ILE B 512 REMARK 465 ASP B 513 REMARK 465 ARG B 514 REMARK 465 VAL B 515 REMARK 465 LYS B 516 REMARK 465 ALA B 517 REMARK 465 LEU B 518 REMARK 465 LEU B 519 REMARK 465 GLY B 520 REMARK 465 GLU B 521 REMARK 465 ARG B 522 REMARK 465 VAL B 523 REMARK 465 LYS B 524 REMARK 465 ASP B 525 REMARK 465 VAL B 526 REMARK 465 ARG B 527 REMARK 465 LEU B 528 REMARK 465 THR B 529 REMARK 465 HIS B 530 REMARK 465 ARG B 531 REMARK 465 LEU B 532 REMARK 465 THR B 533 REMARK 465 ASP B 534 REMARK 465 THR B 535 REMARK 465 PRO B 536 REMARK 465 ALA B 537 REMARK 465 ILE B 538 REMARK 465 VAL B 539 REMARK 465 SER B 540 REMARK 465 THR B 541 REMARK 465 ASP B 542 REMARK 465 ALA B 543 REMARK 465 ASP B 544 REMARK 465 GLU B 545 REMARK 465 MET B 546 REMARK 465 SER B 547 REMARK 465 THR B 548 REMARK 465 GLN B 549 REMARK 465 MET B 550 REMARK 465 ALA B 551 REMARK 465 LYS B 552 REMARK 465 LEU B 553 REMARK 465 PHE B 554 REMARK 465 ALA B 555 REMARK 465 ALA B 556 REMARK 465 ALA B 557 REMARK 465 GLY B 558 REMARK 465 GLN B 559 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD1 ILE B 338 CD1 ILE B 338 2655 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 101 N - CA - C ANGL. DEV. = -22.0 DEGREES REMARK 500 PRO A 445 C - N - CA ANGL. DEV. = 13.6 DEGREES REMARK 500 GLY B 426 N - CA - C ANGL. DEV. = -15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 27 60.01 -111.45 REMARK 500 GLU A 29 -7.59 -52.71 REMARK 500 LEU A 51 -80.67 -56.00 REMARK 500 GLU A 58 80.02 -1.57 REMARK 500 ARG A 64 145.69 -175.55 REMARK 500 ASN A 81 50.91 -107.58 REMARK 500 ALA A 98 60.32 -152.12 REMARK 500 LYS A 99 85.11 -158.68 REMARK 500 LYS A 103 -105.34 -142.12 REMARK 500 GLU A 107 -167.26 -104.04 REMARK 500 GLN A 122 62.98 -153.11 REMARK 500 VAL A 125 -118.62 -84.43 REMARK 500 LYS A 136 127.99 -172.99 REMARK 500 ASP A 185 -7.12 -56.95 REMARK 500 GLU A 215 57.57 -109.30 REMARK 500 ASP A 217 92.46 55.97 REMARK 500 HIS A 252 -76.53 -54.22 REMARK 500 LEU A 277 91.18 -160.71 REMARK 500 GLN A 283 137.23 -171.66 REMARK 500 MET A 288 -90.67 -40.56 REMARK 500 TRP A 289 103.87 -48.26 REMARK 500 ASN A 290 92.48 165.49 REMARK 500 ARG A 291 82.34 -62.54 REMARK 500 ASP A 292 27.61 169.21 REMARK 500 ARG A 303 20.02 45.87 REMARK 500 ILE A 306 -51.53 -133.22 REMARK 500 ASP A 309 50.67 38.84 REMARK 500 LEU A 318 54.28 -141.36 REMARK 500 LEU A 332 19.05 -61.51 REMARK 500 GLU A 337 -72.75 -78.89 REMARK 500 THR A 345 -72.21 -61.72 REMARK 500 ASN A 350 -63.79 -93.29 REMARK 500 ALA A 364 19.03 -68.56 REMARK 500 ASP A 367 87.66 -161.54 REMARK 500 GLU A 384 3.97 -63.10 REMARK 500 PRO A 386 -8.73 -51.45 REMARK 500 GLU A 388 -30.16 -143.21 REMARK 500 LEU A 399 -73.20 -99.12 REMARK 500 LEU A 400 142.95 -36.75 REMARK 500 SER A 404 -150.16 -100.35 REMARK 500 GLU A 425 43.56 -59.85 REMARK 500 GLN A 427 -170.53 176.73 REMARK 500 ILE A 430 79.07 -162.93 REMARK 500 ALA A 435 -151.50 159.50 REMARK 500 ASP A 436 -126.52 -107.48 REMARK 500 SER A 437 171.28 -52.49 REMARK 500 ALA A 439 -93.87 -60.86 REMARK 500 ALA A 440 71.38 -63.89 REMARK 500 ALA A 441 -46.54 -172.24 REMARK 500 PRO A 445 154.87 -15.33 REMARK 500 REMARK 500 THIS ENTRY HAS 118 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 703 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 34 OE1 REMARK 620 2 ASN A 38 OD1 96.9 REMARK 620 3 ADP A 701 O1B 159.2 74.7 REMARK 620 4 ADP A 701 O3B 129.1 129.3 54.6 REMARK 620 5 ADP A 701 O1A 100.6 78.7 59.4 73.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 704 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 38 OD1 REMARK 620 2 ADP B 702 O1B 79.1 REMARK 620 3 ADP B 702 O3B 134.0 56.8 REMARK 620 4 ADP B 702 O1A 76.2 63.6 93.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 702 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Y4U RELATED DB: PDB DBREF 1Y4S A 1 559 UNP P0A6Z3 HTPG_ECOLI 1 559 DBREF 1Y4S B 1 559 UNP P0A6Z3 HTPG_ECOLI 1 559 SEQRES 1 A 559 MET LYS GLY GLN GLU THR ARG GLY PHE GLN SER GLU VAL SEQRES 2 A 559 LYS GLN LEU LEU HIS LEU MET ILE HIS SER LEU TYR SER SEQRES 3 A 559 ASN LYS GLU ILE PHE LEU ARG GLU LEU ILE SER ASN ALA SEQRES 4 A 559 SER ASP ALA ALA ASP LYS LEU ARG PHE ARG ALA LEU SER SEQRES 5 A 559 ASN PRO ASP LEU TYR GLU GLY ASP GLY GLU LEU ARG VAL SEQRES 6 A 559 ARG VAL SER PHE ASP LYS ASP LYS ARG THR LEU THR ILE SEQRES 7 A 559 SER ASP ASN GLY VAL GLY MET THR ARG ASP GLU VAL ILE SEQRES 8 A 559 ASP HIS LEU GLY THR ILE ALA LYS SER GLY THR LYS SER SEQRES 9 A 559 PHE LEU GLU SER LEU GLY SER ASP GLN ALA LYS ASP SER SEQRES 10 A 559 GLN LEU ILE GLY GLN PHE GLY VAL GLY PHE TYR SER ALA SEQRES 11 A 559 PHE ILE VAL ALA ASP LYS VAL THR VAL ARG THR ARG ALA SEQRES 12 A 559 ALA GLY GLU LYS PRO GLU ASN GLY VAL PHE TRP GLU SER SEQRES 13 A 559 ALA GLY GLU GLY GLU TYR THR VAL ALA ASP ILE THR LYS SEQRES 14 A 559 GLU ASP ARG GLY THR GLU ILE THR LEU HIS LEU ARG GLU SEQRES 15 A 559 GLY GLU ASP GLU PHE LEU ASP ASP TRP ARG VAL ARG SER SEQRES 16 A 559 ILE ILE SER LYS TYR SER ASP HIS ILE ALA LEU PRO VAL SEQRES 17 A 559 GLU ILE GLU LYS ARG GLU GLU LYS ASP GLY GLU THR VAL SEQRES 18 A 559 ILE SER TRP GLU LYS ILE ASN LYS ALA GLN ALA LEU TRP SEQRES 19 A 559 THR ARG ASN LYS SER GLU ILE THR ASP GLU GLU TYR LYS SEQRES 20 A 559 GLU PHE TYR LYS HIS ILE ALA HIS ASP PHE ASN ASP PRO SEQRES 21 A 559 LEU THR TRP SER HIS ASN ARG VAL GLU GLY LYS GLN GLU SEQRES 22 A 559 TYR THR SER LEU LEU TYR ILE PRO SER GLN ALA PRO TRP SEQRES 23 A 559 ASP MET TRP ASN ARG ASP HIS LYS HIS GLY LEU LYS LEU SEQRES 24 A 559 TYR VAL GLN ARG VAL PHE ILE MET ASP ASP ALA GLU GLN SEQRES 25 A 559 PHE MET PRO ASN TYR LEU ARG PHE VAL ARG GLY LEU ILE SEQRES 26 A 559 ASP SER SER ASP LEU PRO LEU ASN VAL SER ARG GLU ILE SEQRES 27 A 559 LEU GLN ASP SER THR VAL THR ARG ASN LEU ARG ASN ALA SEQRES 28 A 559 LEU THR LYS ARG VAL LEU GLN MET LEU GLU LYS LEU ALA SEQRES 29 A 559 LYS ASP ASP ALA GLU LYS TYR GLN THR PHE TRP GLN GLN SEQRES 30 A 559 PHE GLY LEU VAL LEU LYS GLU GLY PRO ALA GLU ASP PHE SEQRES 31 A 559 ALA ASN GLN GLU ALA ILE ALA LYS LEU LEU ARG PHE ALA SEQRES 32 A 559 SER THR HIS THR ASP SER SER ALA GLN THR VAL SER LEU SEQRES 33 A 559 GLU ASP TYR VAL SER ARG MET LYS GLU GLY GLN GLU LYS SEQRES 34 A 559 ILE TYR TYR ILE THR ALA ASP SER TYR ALA ALA ALA LYS SEQRES 35 A 559 SER SER PRO HIS LEU GLU LEU LEU ARG LYS LYS GLY ILE SEQRES 36 A 559 GLU VAL LEU LEU LEU SER ASP ARG ILE ASP GLU TRP MET SEQRES 37 A 559 MET ASN TYR LEU THR GLU PHE ASP GLY LYS PRO PHE GLN SEQRES 38 A 559 SER VAL SER LYS VAL ASP GLU SER LEU GLU LYS LEU ALA SEQRES 39 A 559 ASP GLU VAL ASP GLU SER ALA LYS GLU ALA GLU LYS ALA SEQRES 40 A 559 LEU THR PRO PHE ILE ASP ARG VAL LYS ALA LEU LEU GLY SEQRES 41 A 559 GLU ARG VAL LYS ASP VAL ARG LEU THR HIS ARG LEU THR SEQRES 42 A 559 ASP THR PRO ALA ILE VAL SER THR ASP ALA ASP GLU MET SEQRES 43 A 559 SER THR GLN MET ALA LYS LEU PHE ALA ALA ALA GLY GLN SEQRES 1 B 559 MET LYS GLY GLN GLU THR ARG GLY PHE GLN SER GLU VAL SEQRES 2 B 559 LYS GLN LEU LEU HIS LEU MET ILE HIS SER LEU TYR SER SEQRES 3 B 559 ASN LYS GLU ILE PHE LEU ARG GLU LEU ILE SER ASN ALA SEQRES 4 B 559 SER ASP ALA ALA ASP LYS LEU ARG PHE ARG ALA LEU SER SEQRES 5 B 559 ASN PRO ASP LEU TYR GLU GLY ASP GLY GLU LEU ARG VAL SEQRES 6 B 559 ARG VAL SER PHE ASP LYS ASP LYS ARG THR LEU THR ILE SEQRES 7 B 559 SER ASP ASN GLY VAL GLY MET THR ARG ASP GLU VAL ILE SEQRES 8 B 559 ASP HIS LEU GLY THR ILE ALA LYS SER GLY THR LYS SER SEQRES 9 B 559 PHE LEU GLU SER LEU GLY SER ASP GLN ALA LYS ASP SER SEQRES 10 B 559 GLN LEU ILE GLY GLN PHE GLY VAL GLY PHE TYR SER ALA SEQRES 11 B 559 PHE ILE VAL ALA ASP LYS VAL THR VAL ARG THR ARG ALA SEQRES 12 B 559 ALA GLY GLU LYS PRO GLU ASN GLY VAL PHE TRP GLU SER SEQRES 13 B 559 ALA GLY GLU GLY GLU TYR THR VAL ALA ASP ILE THR LYS SEQRES 14 B 559 GLU ASP ARG GLY THR GLU ILE THR LEU HIS LEU ARG GLU SEQRES 15 B 559 GLY GLU ASP GLU PHE LEU ASP ASP TRP ARG VAL ARG SER SEQRES 16 B 559 ILE ILE SER LYS TYR SER ASP HIS ILE ALA LEU PRO VAL SEQRES 17 B 559 GLU ILE GLU LYS ARG GLU GLU LYS ASP GLY GLU THR VAL SEQRES 18 B 559 ILE SER TRP GLU LYS ILE ASN LYS ALA GLN ALA LEU TRP SEQRES 19 B 559 THR ARG ASN LYS SER GLU ILE THR ASP GLU GLU TYR LYS SEQRES 20 B 559 GLU PHE TYR LYS HIS ILE ALA HIS ASP PHE ASN ASP PRO SEQRES 21 B 559 LEU THR TRP SER HIS ASN ARG VAL GLU GLY LYS GLN GLU SEQRES 22 B 559 TYR THR SER LEU LEU TYR ILE PRO SER GLN ALA PRO TRP SEQRES 23 B 559 ASP MET TRP ASN ARG ASP HIS LYS HIS GLY LEU LYS LEU SEQRES 24 B 559 TYR VAL GLN ARG VAL PHE ILE MET ASP ASP ALA GLU GLN SEQRES 25 B 559 PHE MET PRO ASN TYR LEU ARG PHE VAL ARG GLY LEU ILE SEQRES 26 B 559 ASP SER SER ASP LEU PRO LEU ASN VAL SER ARG GLU ILE SEQRES 27 B 559 LEU GLN ASP SER THR VAL THR ARG ASN LEU ARG ASN ALA SEQRES 28 B 559 LEU THR LYS ARG VAL LEU GLN MET LEU GLU LYS LEU ALA SEQRES 29 B 559 LYS ASP ASP ALA GLU LYS TYR GLN THR PHE TRP GLN GLN SEQRES 30 B 559 PHE GLY LEU VAL LEU LYS GLU GLY PRO ALA GLU ASP PHE SEQRES 31 B 559 ALA ASN GLN GLU ALA ILE ALA LYS LEU LEU ARG PHE ALA SEQRES 32 B 559 SER THR HIS THR ASP SER SER ALA GLN THR VAL SER LEU SEQRES 33 B 559 GLU ASP TYR VAL SER ARG MET LYS GLU GLY GLN GLU LYS SEQRES 34 B 559 ILE TYR TYR ILE THR ALA ASP SER TYR ALA ALA ALA LYS SEQRES 35 B 559 SER SER PRO HIS LEU GLU LEU LEU ARG LYS LYS GLY ILE SEQRES 36 B 559 GLU VAL LEU LEU LEU SER ASP ARG ILE ASP GLU TRP MET SEQRES 37 B 559 MET ASN TYR LEU THR GLU PHE ASP GLY LYS PRO PHE GLN SEQRES 38 B 559 SER VAL SER LYS VAL ASP GLU SER LEU GLU LYS LEU ALA SEQRES 39 B 559 ASP GLU VAL ASP GLU SER ALA LYS GLU ALA GLU LYS ALA SEQRES 40 B 559 LEU THR PRO PHE ILE ASP ARG VAL LYS ALA LEU LEU GLY SEQRES 41 B 559 GLU ARG VAL LYS ASP VAL ARG LEU THR HIS ARG LEU THR SEQRES 42 B 559 ASP THR PRO ALA ILE VAL SER THR ASP ALA ASP GLU MET SEQRES 43 B 559 SER THR GLN MET ALA LYS LEU PHE ALA ALA ALA GLY GLN HET MG A 703 1 HET ADP A 701 27 HET MG B 704 1 HET ADP B 702 27 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 ADP 2(C10 H15 N5 O10 P2) HELIX 1 1 GLU A 12 LEU A 24 1 13 HELIX 2 2 TYR A 25 LYS A 28 5 4 HELIX 3 3 GLU A 29 ASN A 53 1 25 HELIX 4 4 PRO A 54 GLU A 58 5 5 HELIX 5 5 THR A 86 GLY A 95 1 10 HELIX 6 6 GLY A 126 TYR A 128 5 3 HELIX 7 7 SER A 129 VAL A 133 1 5 HELIX 8 8 LYS A 147 ASN A 150 5 4 HELIX 9 9 GLU A 184 LEU A 188 5 5 HELIX 10 10 ASP A 189 ASP A 202 1 14 HELIX 11 11 ALA A 232 ARG A 236 5 5 HELIX 12 12 ASN A 237 ILE A 241 5 5 HELIX 13 13 THR A 242 HIS A 255 1 14 HELIX 14 14 GLU A 311 MET A 314 5 4 HELIX 15 15 PRO A 315 ARG A 319 5 5 HELIX 16 16 GLU A 337 ASP A 341 5 5 HELIX 17 17 SER A 342 ASP A 367 1 26 HELIX 18 18 ASP A 367 LYS A 383 1 17 HELIX 19 19 ASP A 389 ALA A 391 5 3 HELIX 20 20 ASN A 392 LYS A 398 1 7 HELIX 21 21 LEU A 447 LYS A 453 1 7 HELIX 22 22 ILE A 464 LEU A 472 1 9 HELIX 23 23 GLN B 10 TYR B 25 1 16 HELIX 24 24 SER B 26 LYS B 28 5 3 HELIX 25 25 GLU B 29 ASN B 53 1 25 HELIX 26 26 THR B 86 LEU B 94 1 9 HELIX 27 27 VAL B 125 ILE B 132 5 8 HELIX 28 28 GLU B 184 LEU B 188 5 5 HELIX 29 29 ASP B 189 TYR B 200 1 12 HELIX 30 30 ALA B 232 ARG B 236 5 5 HELIX 31 31 THR B 242 HIS B 255 1 14 HELIX 32 32 PRO B 315 ARG B 319 5 5 HELIX 33 33 SER B 335 ASP B 341 1 7 HELIX 34 34 SER B 342 ASP B 367 1 26 HELIX 35 35 ASP B 367 PHE B 378 1 12 HELIX 36 36 PHE B 378 GLU B 384 1 7 HELIX 37 37 GLY B 385 GLU B 388 5 4 HELIX 38 38 ASP B 389 ALA B 391 5 3 HELIX 39 39 ASN B 392 LEU B 399 1 8 HELIX 40 40 LEU B 416 SER B 421 1 6 HELIX 41 41 TYR B 438 SER B 443 1 6 HELIX 42 42 LEU B 447 LYS B 452 1 6 HELIX 43 43 ILE B 464 MET B 469 1 6 SHEET 1 A 9 GLU A 5 GLY A 8 0 SHEET 2 A 9 GLU A 161 ILE A 167 -1 O TYR A 162 N ARG A 7 SHEET 3 A 9 GLY A 151 SER A 156 -1 N PHE A 153 O ALA A 165 SHEET 4 A 9 ALA A 134 ARG A 142 -1 N THR A 141 O VAL A 152 SHEET 5 A 9 GLY A 173 LEU A 180 -1 O GLU A 175 N ARG A 140 SHEET 6 A 9 THR A 75 ASP A 80 -1 N ILE A 78 O ILE A 176 SHEET 7 A 9 VAL A 65 ASP A 70 -1 N SER A 68 O THR A 77 SHEET 8 A 9 VAL A 208 GLU A 214 1 O GLU A 209 N VAL A 65 SHEET 9 A 9 VAL A 221 LYS A 226 -1 O GLU A 225 N ILE A 210 SHEET 1 B 5 PRO A 260 ASN A 266 0 SHEET 2 B 5 TYR A 274 PRO A 281 -1 O ILE A 280 N LEU A 261 SHEET 3 B 5 ARG A 322 SER A 327 -1 O ARG A 322 N TYR A 279 SHEET 4 B 5 LEU A 297 VAL A 301 1 N LYS A 298 O GLY A 323 SHEET 5 B 5 VAL A 304 ALA A 310 -1 O MET A 307 N LEU A 299 SHEET 1 C 2 ARG A 401 PHE A 402 0 SHEET 2 C 2 VAL A 414 SER A 415 -1 O VAL A 414 N PHE A 402 SHEET 1 D 2 TYR A 432 ILE A 433 0 SHEET 2 D 2 LEU A 458 LEU A 459 1 O LEU A 458 N ILE A 433 SHEET 1 E 9 GLU B 5 GLY B 8 0 SHEET 2 E 9 GLU B 161 ILE B 167 -1 O VAL B 164 N GLU B 5 SHEET 3 E 9 GLY B 151 SER B 156 -1 N GLY B 151 O ILE B 167 SHEET 4 E 9 ALA B 134 ARG B 142 -1 N THR B 141 O VAL B 152 SHEET 5 E 9 GLY B 173 LEU B 180 -1 O THR B 177 N THR B 138 SHEET 6 E 9 THR B 75 ASP B 80 -1 N LEU B 76 O LEU B 178 SHEET 7 E 9 VAL B 65 ASP B 70 -1 N SER B 68 O THR B 77 SHEET 8 E 9 VAL B 208 GLU B 214 1 O GLU B 211 N VAL B 67 SHEET 9 E 9 VAL B 221 LYS B 226 -1 O VAL B 221 N GLU B 214 SHEET 1 F 5 THR B 262 HIS B 265 0 SHEET 2 F 5 SER B 276 ILE B 280 -1 O LEU B 278 N SER B 264 SHEET 3 F 5 ARG B 322 SER B 327 -1 O ARG B 322 N TYR B 279 SHEET 4 F 5 LEU B 297 VAL B 301 1 N LYS B 298 O GLY B 323 SHEET 5 F 5 VAL B 304 ALA B 310 -1 O VAL B 304 N VAL B 301 SHEET 1 G 2 ARG B 401 PHE B 402 0 SHEET 2 G 2 VAL B 414 SER B 415 -1 O VAL B 414 N PHE B 402 SHEET 1 H 3 VAL B 457 LEU B 460 0 SHEET 2 H 3 ILE B 430 THR B 434 1 N TYR B 431 O LEU B 458 SHEET 3 H 3 PHE B 480 GLN B 481 1 O GLN B 481 N ILE B 430 LINK OE1 GLU A 34 MG MG A 703 1555 1555 3.15 LINK OD1 ASN A 38 MG MG A 703 1555 1555 2.35 LINK O1B ADP A 701 MG MG A 703 1555 1555 2.63 LINK O3B ADP A 701 MG MG A 703 1555 1555 2.68 LINK O1A ADP A 701 MG MG A 703 1555 1555 2.24 LINK OD1 ASN B 38 MG MG B 704 1555 1555 2.49 LINK O1B ADP B 702 MG MG B 704 1555 1555 2.45 LINK O3B ADP B 702 MG MG B 704 1555 1555 2.63 LINK O1A ADP B 702 MG MG B 704 1555 1555 2.50 SITE 1 AC1 3 GLU A 34 ASN A 38 ADP A 701 SITE 1 AC2 4 GLU B 34 ASN B 38 HIS B 255 ADP B 702 SITE 1 AC3 9 ASN A 38 ASP A 80 MET A 85 HIS A 93 SITE 2 AC3 9 GLY A 126 PHE A 127 THR A 174 HIS A 255 SITE 3 AC3 9 MG A 703 SITE 1 AC4 8 ASN B 38 ALA B 42 ASP B 80 HIS B 93 SITE 2 AC4 8 PHE B 127 THR B 174 HIS B 255 MG B 704 CRYST1 72.500 84.180 212.886 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013793 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011879 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004697 0.00000