HEADER TRANSFERASE 03-DEC-04 1Y5X TITLE TRNA-GUANINE TRANSGLYCOSYLASE (TGT) IN COMPLEX WITH 6-AMINO-4-[2-(4- TITLE 2 METHOXYPHENYL)ETHYL]-1,7-DIHYDRO-8H-IMIDAZO[4,5-G]QUINAZOLIN-8-ONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUEUINE TRNA-RIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: TRNA-GUANINE TRANSGLYCOSYLASE, GUANINE INSERTION ENZYME; COMPND 5 EC: 2.4.2.29; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZYMOMONAS MOBILIS; SOURCE 3 ORGANISM_TAXID: 542; SOURCE 4 GENE: TGT; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET9D KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.STENGL,E.A.MEYER,A.HEINE,R.BRENK,F.DIEDERICH,G.KLEBE REVDAT 6 25-OCT-23 1Y5X 1 REMARK REVDAT 5 26-AUG-20 1Y5X 1 REMARK LINK REVDAT 4 13-JUL-11 1Y5X 1 VERSN REVDAT 3 05-MAY-09 1Y5X 1 JRNL REVDAT 2 24-FEB-09 1Y5X 1 VERSN REVDAT 1 13-DEC-05 1Y5X 0 JRNL AUTH B.STENGL,E.A.MEYER,A.HEINE,R.BRENK,F.DIEDERICH,G.KLEBE JRNL TITL CRYSTAL STRUCTURES OF TRNA-GUANINE TRANSGLYCOSYLASE (TGT) IN JRNL TITL 2 COMPLEX WITH NOVEL AND POTENT INHIBITORS UNRAVEL PRONOUNCED JRNL TITL 3 INDUCED-FIT ADAPTATIONS AND SUGGEST DIMER FORMATION UPON JRNL TITL 4 SUBSTRATE BINDING JRNL REF J.MOL.BIOL. V. 370 492 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17524419 JRNL DOI 10.1016/J.JMB.2007.04.008 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.A.MEYER,N.DONATI,M.GUILLOT,B.SCHWEIZER,F.DIEDERICH, REMARK 1 AUTH 2 B.STENGL,A.HEINE,R.BRENK,G.KLEBE REMARK 1 TITL SYNTHESIS, BIOLOGICAL EVALUATION AND CRYSTALLOGRAPHIC REMARK 1 TITL 2 STUDIES OF EXTENDED GUANINE-BASED (LIN-BENZOGUANINE) REMARK 1 TITL 3 INHIBITORS FOR TRNA-GUANINE TRANSGLYCOSYLASE (TGT) REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 530934.800 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 42047 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2118 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.17 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3754 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 199 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5568 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 243 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.08000 REMARK 3 B22 (A**2) : 1.44000 REMARK 3 B33 (A**2) : 3.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.23 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.30 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.760 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.370 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.160 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.060 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.850 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 53.22 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : E89.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Y5X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1000031156. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44873 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.35700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1P0D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8000, MES, DMSO, DTT, PH 5.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -7.84512 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 87.72993 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 GLN A 7 REMARK 465 GLU A 8 REMARK 465 THR A 9 REMARK 465 ASP A 10 REMARK 465 HIS A 127 REMARK 465 LEU A 128 REMARK 465 ASP A 129 REMARK 465 GLY A 130 REMARK 465 SER A 131 REMARK 465 ALA A 383 REMARK 465 ARG A 384 REMARK 465 ASN A 385 REMARK 465 SER A 386 REMARK 465 VAL D 1002 REMARK 465 GLU D 1003 REMARK 465 ALA D 1004 REMARK 465 THR D 1005 REMARK 465 ALA D 1006 REMARK 465 GLN D 1007 REMARK 465 GLU D 1008 REMARK 465 THR D 1009 REMARK 465 ASP D 1010 REMARK 465 ALA D 1048 REMARK 465 ALA D 1049 REMARK 465 THR D 1050 REMARK 465 VAL D 1051 REMARK 465 LYS D 1052 REMARK 465 ALA D 1053 REMARK 465 LEU D 1054 REMARK 465 LYS D 1055 REMARK 465 PRO D 1056 REMARK 465 GLU D 1057 REMARK 465 THR D 1058 REMARK 465 VAL D 1059 REMARK 465 ARG D 1060 REMARK 465 ALA D 1061 REMARK 465 THR D 1062 REMARK 465 HIS D 1127 REMARK 465 LEU D 1128 REMARK 465 ASP D 1129 REMARK 465 GLY D 1130 REMARK 465 SER D 1131 REMARK 465 ALA D 1383 REMARK 465 ARG D 1384 REMARK 465 ASN D 1385 REMARK 465 SER D 1386 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 73 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 GLN A 324 CG CD OE1 NE2 REMARK 470 LEU D1076 CG CD1 CD2 REMARK 470 ARG D1077 CG CD NE CZ NH1 NH2 REMARK 470 ARG D1132 CG CD NE CZ NH1 NH2 REMARK 470 ARG D1306 CG CD NE CZ NH1 NH2 REMARK 470 GLN D1324 CG CD OE1 NE2 REMARK 470 LYS D1325 CG CD CE NZ REMARK 470 GLU D1348 CG CD OE1 OE2 REMARK 470 GLN D1375 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 48 58.09 -109.88 REMARK 500 LYS A 52 116.16 -29.84 REMARK 500 MET A 109 1.92 -69.74 REMARK 500 SER A 110 -79.92 -111.34 REMARK 500 LEU A 111 39.31 -86.96 REMARK 500 SER A 113 -85.65 -55.82 REMARK 500 GLN A 203 -161.86 -129.01 REMARK 500 SER A 205 -137.46 52.58 REMARK 500 SER D1015 119.57 -166.45 REMARK 500 GLU D1022 106.03 -164.67 REMARK 500 MET D1109 -35.92 -39.89 REMARK 500 SER D1110 -97.45 -72.23 REMARK 500 SER D1118 156.72 173.56 REMARK 500 SER D1205 -136.87 50.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 318 SG REMARK 620 2 CYS A 320 SG 101.7 REMARK 620 3 CYS A 323 SG 116.4 119.4 REMARK 620 4 HIS A 349 ND1 101.1 117.8 99.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D1400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D1318 SG REMARK 620 2 CYS D1320 SG 104.1 REMARK 620 3 CYS D1323 SG 115.0 119.0 REMARK 620 4 HIS D1349 ND1 106.2 114.0 98.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE E89 A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 1400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE E89 D 1500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Q4W RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TGT IN COMPLEX WITH 2,6-DIAMINO-3H- QUINAZOLIN- REMARK 900 4-ONE REMARK 900 RELATED ID: 1R5Y RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TGT IN COMPLEX WITH 2,6-DIAMINO-3H- QUINAZOLIN- REMARK 900 4-ONE CRYSTALLIZED AT PH 5.5 REMARK 900 RELATED ID: 1S38 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TGT IN COMPLEX WITH 2-AMINO-8- REMARK 900 METHYLQUINAZOLIN-4(3H)-ONE REMARK 900 RELATED ID: 1Q63 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TGT IN COMPLEX WITH 2,6-DIAMINO-8-(1H- REMARK 900 IMIDAZOL-2-YLSULFANYLMETHYL)-3H-QUINAZOLINE-4-ONE CRYSTALLIZED AT REMARK 900 PH 5.5 REMARK 900 RELATED ID: 1Q65 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TGT IN COMPLEX WITH 2,6-DIAMINO-8-(2- REMARK 900 DIMETHYLAMINOETHYLSULFANYLMETHYL)-3H-QUINAZOLIN-4-ONE CRYSTALLIZED REMARK 900 AT PH 5.5 REMARK 900 RELATED ID: 1Q66 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TGT IN COMPLEX WITH 2-AMINO-6- AMINOMETHYL-8- REMARK 900 PHENYLSULFANYLMETHYL-3H-QUINAZOLIN-4-ONE CRYSTALLIZED AT PH 5.5 REMARK 900 RELATED ID: 1Y5V RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH NE8 REMARK 900 RELATED ID: 1Y5W RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH NEZ DBREF 1Y5X A 2 386 UNP P28720 TGT_ZYMMO 1 385 DBREF 1Y5X D 1002 1386 UNP P28720 TGT_ZYMMO 1 385 SEQRES 1 A 385 VAL GLU ALA THR ALA GLN GLU THR ASP ARG PRO ARG PHE SEQRES 2 A 385 SER PHE SER ILE ALA ALA ARG GLU GLY LYS ALA ARG THR SEQRES 3 A 385 GLY THR ILE GLU MET LYS ARG GLY VAL ILE ARG THR PRO SEQRES 4 A 385 ALA PHE MET PRO VAL GLY THR ALA ALA THR VAL LYS ALA SEQRES 5 A 385 LEU LYS PRO GLU THR VAL ARG ALA THR GLY ALA ASP ILE SEQRES 6 A 385 ILE LEU GLY ASN THR TYR HIS LEU MET LEU ARG PRO GLY SEQRES 7 A 385 ALA GLU ARG ILE ALA LYS LEU GLY GLY LEU HIS SER PHE SEQRES 8 A 385 MET GLY TRP ASP ARG PRO ILE LEU THR ASP SER GLY GLY SEQRES 9 A 385 TYR GLN VAL MET SER LEU SER SER LEU THR LYS GLN SER SEQRES 10 A 385 GLU GLU GLY VAL THR PHE LYS SER HIS LEU ASP GLY SER SEQRES 11 A 385 ARG HIS MET LEU SER PRO GLU ARG SER ILE GLU ILE GLN SEQRES 12 A 385 HIS LEU LEU GLY SER ASP ILE VAL MET ALA PHE ASP GLU SEQRES 13 A 385 CYS THR PRO TYR PRO ALA THR PRO SER ARG ALA ALA SER SEQRES 14 A 385 SER MET GLU ARG SER MET ARG TRP ALA LYS ARG SER ARG SEQRES 15 A 385 ASP ALA PHE ASP SER ARG LYS GLU GLN ALA GLU ASN ALA SEQRES 16 A 385 ALA LEU PHE GLY ILE GLN GLN GLY SER VAL PHE GLU ASN SEQRES 17 A 385 LEU ARG GLN GLN SER ALA ASP ALA LEU ALA GLU ILE GLY SEQRES 18 A 385 PHE ASP GLY TYR ALA VAL GLY GLY LEU ALA VAL GLY GLU SEQRES 19 A 385 GLY GLN ASP GLU MET PHE ARG VAL LEU ASP PHE SER VAL SEQRES 20 A 385 PRO MET LEU PRO ASP ASP LYS PRO HIS TYR LEU MET GLY SEQRES 21 A 385 VAL GLY LYS PRO ASP ASP ILE VAL GLY ALA VAL GLU ARG SEQRES 22 A 385 GLY ILE ASP MET PHE ASP CYS VAL LEU PRO THR ARG SER SEQRES 23 A 385 GLY ARG ASN GLY GLN ALA PHE THR TRP ASP GLY PRO ILE SEQRES 24 A 385 ASN ILE ARG ASN ALA ARG PHE SER GLU ASP LEU LYS PRO SEQRES 25 A 385 LEU ASP SER GLU CYS HIS CYS ALA VAL CYS GLN LYS TRP SEQRES 26 A 385 SER ARG ALA TYR ILE HIS HIS LEU ILE ARG ALA GLY GLU SEQRES 27 A 385 ILE LEU GLY ALA MET LEU MET THR GLU HIS ASN ILE ALA SEQRES 28 A 385 PHE TYR GLN GLN LEU MET GLN LYS ILE ARG ASP SER ILE SEQRES 29 A 385 SER GLU GLY ARG PHE SER GLN PHE ALA GLN ASP PHE ARG SEQRES 30 A 385 ALA ARG TYR PHE ALA ARG ASN SER SEQRES 1 D 385 VAL GLU ALA THR ALA GLN GLU THR ASP ARG PRO ARG PHE SEQRES 2 D 385 SER PHE SER ILE ALA ALA ARG GLU GLY LYS ALA ARG THR SEQRES 3 D 385 GLY THR ILE GLU MET LYS ARG GLY VAL ILE ARG THR PRO SEQRES 4 D 385 ALA PHE MET PRO VAL GLY THR ALA ALA THR VAL LYS ALA SEQRES 5 D 385 LEU LYS PRO GLU THR VAL ARG ALA THR GLY ALA ASP ILE SEQRES 6 D 385 ILE LEU GLY ASN THR TYR HIS LEU MET LEU ARG PRO GLY SEQRES 7 D 385 ALA GLU ARG ILE ALA LYS LEU GLY GLY LEU HIS SER PHE SEQRES 8 D 385 MET GLY TRP ASP ARG PRO ILE LEU THR ASP SER GLY GLY SEQRES 9 D 385 TYR GLN VAL MET SER LEU SER SER LEU THR LYS GLN SER SEQRES 10 D 385 GLU GLU GLY VAL THR PHE LYS SER HIS LEU ASP GLY SER SEQRES 11 D 385 ARG HIS MET LEU SER PRO GLU ARG SER ILE GLU ILE GLN SEQRES 12 D 385 HIS LEU LEU GLY SER ASP ILE VAL MET ALA PHE ASP GLU SEQRES 13 D 385 CYS THR PRO TYR PRO ALA THR PRO SER ARG ALA ALA SER SEQRES 14 D 385 SER MET GLU ARG SER MET ARG TRP ALA LYS ARG SER ARG SEQRES 15 D 385 ASP ALA PHE ASP SER ARG LYS GLU GLN ALA GLU ASN ALA SEQRES 16 D 385 ALA LEU PHE GLY ILE GLN GLN GLY SER VAL PHE GLU ASN SEQRES 17 D 385 LEU ARG GLN GLN SER ALA ASP ALA LEU ALA GLU ILE GLY SEQRES 18 D 385 PHE ASP GLY TYR ALA VAL GLY GLY LEU ALA VAL GLY GLU SEQRES 19 D 385 GLY GLN ASP GLU MET PHE ARG VAL LEU ASP PHE SER VAL SEQRES 20 D 385 PRO MET LEU PRO ASP ASP LYS PRO HIS TYR LEU MET GLY SEQRES 21 D 385 VAL GLY LYS PRO ASP ASP ILE VAL GLY ALA VAL GLU ARG SEQRES 22 D 385 GLY ILE ASP MET PHE ASP CYS VAL LEU PRO THR ARG SER SEQRES 23 D 385 GLY ARG ASN GLY GLN ALA PHE THR TRP ASP GLY PRO ILE SEQRES 24 D 385 ASN ILE ARG ASN ALA ARG PHE SER GLU ASP LEU LYS PRO SEQRES 25 D 385 LEU ASP SER GLU CYS HIS CYS ALA VAL CYS GLN LYS TRP SEQRES 26 D 385 SER ARG ALA TYR ILE HIS HIS LEU ILE ARG ALA GLY GLU SEQRES 27 D 385 ILE LEU GLY ALA MET LEU MET THR GLU HIS ASN ILE ALA SEQRES 28 D 385 PHE TYR GLN GLN LEU MET GLN LYS ILE ARG ASP SER ILE SEQRES 29 D 385 SER GLU GLY ARG PHE SER GLN PHE ALA GLN ASP PHE ARG SEQRES 30 D 385 ALA ARG TYR PHE ALA ARG ASN SER HET ZN A 400 1 HET E89 A 500 25 HET ZN D1400 1 HET E89 D1500 25 HETNAM ZN ZINC ION HETNAM E89 6-AMINO-4-[2-(4-METHOXYPHENYL)ETHYL]-1,7-DIHYDRO-8H- HETNAM 2 E89 IMIDAZO[4,5-G]QUINAZOLIN-8-ONE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 E89 2(C18 H17 N5 O2) FORMUL 7 HOH *243(H2 O) HELIX 1 1 LYS A 55 THR A 62 1 8 HELIX 2 2 ASN A 70 ARG A 77 1 8 HELIX 3 3 GLY A 79 LEU A 86 1 8 HELIX 4 4 GLY A 88 GLY A 94 1 7 HELIX 5 5 GLY A 104 MET A 109 1 6 HELIX 6 6 SER A 136 GLY A 148 1 13 HELIX 7 7 THR A 164 SER A 188 1 25 HELIX 8 8 ARG A 189 ALA A 196 1 8 HELIX 9 9 PHE A 207 GLY A 222 1 16 HELIX 10 10 GLU A 235 VAL A 248 1 14 HELIX 11 11 PRO A 249 LEU A 251 5 3 HELIX 12 12 LYS A 264 GLU A 273 1 10 HELIX 13 13 VAL A 282 GLY A 291 1 10 HELIX 14 14 ASN A 304 SER A 308 5 5 HELIX 15 15 CYS A 320 TRP A 326 1 7 HELIX 16 16 SER A 327 ALA A 337 1 11 HELIX 17 17 GLU A 339 GLU A 367 1 29 HELIX 18 18 ARG A 369 PHE A 382 1 14 HELIX 19 19 ASN D 1070 ARG D 1077 1 8 HELIX 20 20 GLY D 1079 LEU D 1086 1 8 HELIX 21 21 GLY D 1088 GLY D 1094 1 7 HELIX 22 22 GLY D 1104 SER D 1112 1 9 HELIX 23 23 SER D 1136 GLY D 1148 1 13 HELIX 24 24 THR D 1164 ARG D 1189 1 26 HELIX 25 25 ARG D 1189 ALA D 1196 1 8 HELIX 26 26 PHE D 1207 GLY D 1222 1 16 HELIX 27 27 GLY D 1236 VAL D 1248 1 13 HELIX 28 28 PRO D 1249 LEU D 1251 5 3 HELIX 29 29 LYS D 1264 ARG D 1274 1 11 HELIX 30 30 VAL D 1282 GLY D 1288 1 7 HELIX 31 31 ASN D 1304 SER D 1308 5 5 HELIX 32 32 CYS D 1320 TRP D 1326 1 7 HELIX 33 33 SER D 1327 ALA D 1337 1 11 HELIX 34 34 GLU D 1339 GLU D 1367 1 29 HELIX 35 35 ARG D 1369 PHE D 1382 1 14 SHEET 1 A 3 SER A 15 GLU A 22 0 SHEET 2 A 3 ALA A 25 MET A 32 -1 O GLU A 31 N SER A 15 SHEET 3 A 3 GLY A 35 THR A 39 -1 O ILE A 37 N ILE A 30 SHEET 1 B 9 ALA A 41 GLY A 46 0 SHEET 2 B 9 ILE A 67 GLY A 69 1 O LEU A 68 N PRO A 44 SHEET 3 B 9 ILE A 99 THR A 101 1 O LEU A 100 N GLY A 69 SHEET 4 B 9 ILE A 151 MET A 153 1 O ILE A 151 N THR A 101 SHEET 5 B 9 ALA A 197 GLN A 202 1 O ALA A 197 N VAL A 152 SHEET 6 B 9 GLY A 225 VAL A 228 1 O ALA A 227 N GLY A 200 SHEET 7 B 9 HIS A 257 LEU A 259 1 O TYR A 258 N VAL A 228 SHEET 8 B 9 MET A 278 CYS A 281 1 O MET A 278 N LEU A 259 SHEET 9 B 9 ALA A 41 GLY A 46 1 N MET A 43 O PHE A 279 SHEET 1 C 3 THR A 115 SER A 118 0 SHEET 2 C 3 GLY A 121 PHE A 124 -1 O THR A 123 N LYS A 116 SHEET 3 C 3 HIS A 133 LEU A 135 -1 O LEU A 135 N VAL A 122 SHEET 1 D 2 GLN A 292 ALA A 293 0 SHEET 2 D 2 ILE A 300 ASN A 301 -1 O ILE A 300 N ALA A 293 SHEET 1 E 3 PHE D1014 GLU D1022 0 SHEET 2 E 3 ALA D1025 MET D1032 -1 O GLU D1031 N SER D1015 SHEET 3 E 3 GLY D1035 THR D1039 -1 O ILE D1037 N ILE D1030 SHEET 1 F 8 ALA D1041 MET D1043 0 SHEET 2 F 8 MET D1278 ASP D1280 1 O PHE D1279 N MET D1043 SHEET 3 F 8 HIS D1257 LEU D1259 1 N LEU D1259 O MET D1278 SHEET 4 F 8 GLY D1225 VAL D1228 1 N VAL D1228 O TYR D1258 SHEET 5 F 8 ALA D1197 GLN D1202 1 N GLY D1200 O ALA D1227 SHEET 6 F 8 ILE D1151 MET D1153 1 N VAL D1152 O ALA D1197 SHEET 7 F 8 ILE D1099 THR D1101 1 N THR D1101 O ILE D1151 SHEET 8 F 8 ILE D1067 GLY D1069 1 N ILE D1067 O LEU D1100 SHEET 1 G 3 LYS D1116 SER D1118 0 SHEET 2 G 3 GLY D1121 PHE D1124 -1 O THR D1123 N LYS D1116 SHEET 3 G 3 HIS D1133 LEU D1135 -1 O HIS D1133 N PHE D1124 SHEET 1 H 2 GLN D1292 THR D1295 0 SHEET 2 H 2 GLY D1298 ASN D1301 -1 O ILE D1300 N ALA D1293 LINK SG CYS A 318 ZN ZN A 400 1555 1555 2.37 LINK SG CYS A 320 ZN ZN A 400 1555 1555 2.26 LINK SG CYS A 323 ZN ZN A 400 1555 1555 2.33 LINK ND1 HIS A 349 ZN ZN A 400 1555 1555 2.22 LINK SG CYS D1318 ZN ZN D1400 1555 1555 2.38 LINK SG CYS D1320 ZN ZN D1400 1555 1555 2.39 LINK SG CYS D1323 ZN ZN D1400 1555 1555 2.29 LINK ND1 HIS D1349 ZN ZN D1400 1555 1555 2.21 CISPEP 1 THR A 39 PRO A 40 0 -0.21 CISPEP 2 ARG A 77 PRO A 78 0 0.16 CISPEP 3 TYR A 161 PRO A 162 0 -0.16 CISPEP 4 THR D 1039 PRO D 1040 0 -0.05 CISPEP 5 ARG D 1077 PRO D 1078 0 -0.01 CISPEP 6 TYR D 1161 PRO D 1162 0 -0.21 SITE 1 AC1 4 CYS A 318 CYS A 320 CYS A 323 HIS A 349 SITE 1 AC2 17 VAL A 45 LEU A 68 ASN A 70 ASP A 102 SITE 2 AC2 17 SER A 103 TYR A 106 GLN A 107 ASP A 156 SITE 3 AC2 17 CYS A 158 GLN A 203 GLY A 229 GLY A 230 SITE 4 AC2 17 LEU A 231 ALA A 232 MET A 260 GLY A 261 SITE 5 AC2 17 HOH A2218 SITE 1 AC3 4 CYS D1318 CYS D1320 CYS D1323 HIS D1349 SITE 1 AC4 18 LEU D1068 GLY D1069 ASP D1102 SER D1103 SITE 2 AC4 18 TYR D1106 ASP D1156 CYS D1158 ILE D1201 SITE 3 AC4 18 GLN D1203 GLY D1229 GLY D1230 LEU D1231 SITE 4 AC4 18 ALA D1232 TYR D1258 MET D1260 GLY D1261 SITE 5 AC4 18 ASP D1280 HOH D2123 CRYST1 71.110 64.210 88.080 90.00 95.11 90.00 P 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014063 0.000000 0.001258 0.00000 SCALE2 0.000000 0.015573 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011399 0.00000