HEADER DNA BINDING PROTEIN 07-DEC-04 1Y6U TITLE THE STRUCTURE OF THE EXCISIONASE (XIS) PROTEIN FROM CONJUGATIVE TITLE 2 TRANSPOSON TN916 PROVIDES INSIGHTS INTO THE REGULATION OF TITLE 3 HETEROBIVALENT TYROSINE RECOMBINASES COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXCISIONASE FROM TRANSPOSON TN916; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: XIS; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 1351; SOURCE 4 GENE: XIS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: RJ3386 (BL21-DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTYB12 KEYWDS DNA ARCHITECTURAL PROTEIN, TYROSINE RECOMBINASE, EXCISIONASE, WINGED- KEYWDS 2 HELIX PROTEIN, CONJUGATIVE TRANSPOSON, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.ABBANI,M.IWAHARA,R.T.CLUBB REVDAT 4 22-MAY-24 1Y6U 1 REMARK REVDAT 3 02-MAR-22 1Y6U 1 REMARK SEQADV REVDAT 2 24-FEB-09 1Y6U 1 VERSN REVDAT 1 15-MAR-05 1Y6U 0 JRNL AUTH M.ABBANI,M.IWAHARA,R.T.CLUBB JRNL TITL THE STRUCTURE OF THE EXCISIONASE (XIS) PROTEIN FROM JRNL TITL 2 CONJUGATIVE TRANSPOSON TN916 PROVIDES INSIGHTS INTO THE JRNL TITL 3 REGULATION OF HETEROBIVALENT TYROSINE RECOMBINASES JRNL REF J.MOL.BIOL. V. 347 11 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15733914 JRNL DOI 10.1016/J.JMB.2005.01.019 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, XPLOR-NIH REMARK 3 AUTHORS : C.D.SCHWIETERS,J.J.KUSZEWSKI,N.TJANDRA,G.M.CLORE REMARK 3 (XPLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Y6U COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1000031189. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 60 MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM 15N/13C LABELED XIS, 30 MM REMARK 210 NAOAC, 60 MM NACL, 93% H2O, 7% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 4D_13C/15N- REMARK 210 SEPARATED_NOESY; HNCA-J; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.1, NMRPIPE SGI6X, PIPP REMARK 210 4.3.5 REMARK 210 METHOD USED : HYBRID DISTANCE GEOMETRY AND REMARK 210 SIMULATED ANNEALING CALCULATIONS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 ALA A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 GLN A 3 REMARK 465 THR A 4 REMARK 465 ASP A 5 REMARK 465 ASP A 65 REMARK 465 ALA A 66 REMARK 465 ILE A 67 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 14 H ILE A 52 1.38 REMARK 500 H LEU A 14 O ILE A 52 1.55 REMARK 500 O LEU A 33 H ASN A 37 1.56 REMARK 500 O ASN A 37 H ALA A 40 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 24 85.73 -42.75 REMARK 500 1 ASN A 37 60.22 -103.13 REMARK 500 1 ASN A 48 -29.07 -151.76 REMARK 500 1 GLU A 58 -30.23 -39.89 REMARK 500 1 ILE A 60 30.72 -95.94 REMARK 500 2 ARG A 24 86.03 -42.55 REMARK 500 2 ASN A 37 50.65 -99.54 REMARK 500 2 ASN A 48 -31.88 -152.08 REMARK 500 3 PRO A 7 109.84 -46.81 REMARK 500 3 ILE A 8 -41.31 -29.02 REMARK 500 3 ARG A 24 83.06 -45.88 REMARK 500 3 ASN A 37 64.96 -100.77 REMARK 500 3 ASN A 48 -14.92 -149.97 REMARK 500 3 ILE A 60 33.39 -96.36 REMARK 500 4 ARG A 24 87.67 -42.19 REMARK 500 4 LYS A 38 -19.28 -46.28 REMARK 500 4 ASN A 46 76.74 -153.32 REMARK 500 5 ILE A 8 -25.00 -36.00 REMARK 500 5 ARG A 24 86.02 -45.62 REMARK 500 5 ASN A 46 75.35 -150.18 REMARK 500 5 GLU A 58 -31.54 -39.32 REMARK 500 6 ARG A 24 78.69 -52.63 REMARK 500 6 ASN A 37 48.38 -99.49 REMARK 500 6 ASN A 48 11.12 -149.99 REMARK 500 6 LYS A 55 -66.00 -92.09 REMARK 500 7 ILE A 8 -22.88 -37.58 REMARK 500 7 ARG A 24 83.01 -53.01 REMARK 500 7 ASN A 37 61.34 -115.94 REMARK 500 7 LYS A 38 -16.27 -45.86 REMARK 500 7 ASN A 46 77.91 -106.47 REMARK 500 7 ASN A 48 -13.81 -149.96 REMARK 500 7 GLN A 56 -70.93 -54.81 REMARK 500 8 ARG A 24 87.28 -48.75 REMARK 500 8 ASN A 48 9.79 -150.87 REMARK 500 8 LYS A 55 -65.66 -91.86 REMARK 500 9 ARG A 24 86.75 -40.05 REMARK 500 9 ASN A 37 50.37 -98.39 REMARK 500 9 ASN A 46 75.48 -110.86 REMARK 500 9 ASN A 48 12.67 -149.50 REMARK 500 10 ILE A 8 -12.68 -48.40 REMARK 500 10 ARG A 24 86.81 -41.62 REMARK 500 10 ASN A 48 -8.97 -148.87 REMARK 500 11 ILE A 8 -39.46 -37.60 REMARK 500 11 ARG A 24 85.84 -41.28 REMARK 500 11 GLU A 35 -15.11 -47.71 REMARK 500 11 LYS A 38 -14.70 -48.02 REMARK 500 11 ASN A 48 -24.73 -150.19 REMARK 500 12 ILE A 8 -30.58 -37.86 REMARK 500 12 ARG A 24 87.75 -49.77 REMARK 500 12 ASN A 37 66.31 -103.88 REMARK 500 REMARK 500 THIS ENTRY HAS 91 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1Y6U A 1 67 UNP Q79DA1 Q79DA1_ENTFA 1 67 SEQADV 1Y6U ALA A -2 UNP Q79DA1 CLONING ARTIFACT SEQADV 1Y6U GLY A -1 UNP Q79DA1 CLONING ARTIFACT SEQADV 1Y6U HIS A 0 UNP Q79DA1 CLONING ARTIFACT SEQRES 1 A 70 ALA GLY HIS MET LYS GLN THR ASP ILE PRO ILE TRP GLU SEQRES 2 A 70 ARG TYR THR LEU THR ILE GLU GLU ALA SER LYS TYR PHE SEQRES 3 A 70 ARG ILE GLY GLU ASN LYS LEU ARG ARG LEU ALA GLU GLU SEQRES 4 A 70 ASN LYS ASN ALA ASN TRP LEU ILE MET ASN GLY ASN ARG SEQRES 5 A 70 ILE GLN ILE LYS ARG LYS GLN PHE GLU LYS ILE ILE ASP SEQRES 6 A 70 THR LEU ASP ALA ILE HELIX 1 1 ILE A 16 PHE A 23 1 8 HELIX 2 2 GLY A 26 ASN A 37 1 12 HELIX 3 3 ARG A 54 ILE A 60 1 7 SHEET 1 A 3 THR A 13 THR A 15 0 SHEET 2 A 3 ARG A 49 LYS A 53 -1 O ILE A 52 N LEU A 14 SHEET 3 A 3 LEU A 43 ASN A 46 -1 N ASN A 46 O ARG A 49 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1