HEADER HYDROLASE 07-DEC-04 1Y6V TITLE STRUCTURE OF E. COLI ALKALINE PHOSPHATASE IN PRESENCE OF COBALT AT TITLE 2 1.60 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALKALINE PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: APASE; COMPND 5 EC: 3.1.3.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: PHOA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: SM547; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PEK154 KEYWDS METAL SPECIFICITY, HIGH-SPIN/LOW-SPIN CONFIGURATIONS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.WANG,K.STIEGLITZ,E.R.KANTROWITZ REVDAT 3 23-AUG-23 1Y6V 1 REMARK LINK REVDAT 2 24-FEB-09 1Y6V 1 VERSN REVDAT 1 21-JUN-05 1Y6V 0 JRNL AUTH J.WANG,K.A.STIEGLITZ,E.R.KANTROWITZ JRNL TITL METAL SPECIFICITY IS CORRELATED WITH TWO CRUCIAL ACTIVE SITE JRNL TITL 2 RESIDUES IN ESCHERICHIA COLI ALKALINE PHOSPHATASE(,). JRNL REF BIOCHEMISTRY V. 44 8378 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 15938627 JRNL DOI 10.1021/BI050155P REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 160083 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 16008 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6608 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 712 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Y6V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1000031190. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MONOCHROMATIC REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 160887 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 14.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.28800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1ED8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM COBALT CHLORIDE, 2.1 M AMMONIUM REMARK 280 SULFATE, PH 9.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.23750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 82.12850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 96.40950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.23750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 82.12850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 96.40950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.23750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 82.12850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 96.40950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.23750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 82.12850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 96.40950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS BIOLOGICALLY ACTIVE DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -133.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 990 O HOH A 1142 1.97 REMARK 500 O HOH B 1063 O HOH B 1103 2.11 REMARK 500 O1 SO4 A 858 O HOH A 859 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 322 CB GLU B 322 CG 0.145 REMARK 500 GLU B 322 CD GLU B 322 OE1 0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 209 CD - CE - NZ ANGL. DEV. = 14.5 DEGREES REMARK 500 ARG A 418 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 267 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASN B 293 N - CA - C ANGL. DEV. = 17.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 3 -59.56 -148.23 REMARK 500 ALA A 88 -163.22 -101.49 REMARK 500 ARG A 292 -84.54 -50.66 REMARK 500 ASN A 293 154.07 88.43 REMARK 500 THR A 367 -162.85 -161.41 REMARK 500 PRO B 2 104.60 -54.02 REMARK 500 ALA B 88 -167.26 -103.91 REMARK 500 ALA B 217 -160.85 -164.51 REMARK 500 GLN B 221 154.71 -49.58 REMARK 500 ASN B 244 32.92 -91.12 REMARK 500 ASN B 293 166.45 72.32 REMARK 500 THR B 367 -163.69 -162.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 851 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 51 OD1 REMARK 620 2 SER A 102 OG 116.2 REMARK 620 3 ASP A 369 OD1 93.7 86.0 REMARK 620 4 HIS A 370 NE2 114.7 129.1 89.5 REMARK 620 5 PO4 A 856 O3 100.9 72.4 157.6 99.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 852 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 51 OD2 REMARK 620 2 THR A 155 OG1 91.0 REMARK 620 3 GLU A 322 OE2 94.6 87.3 REMARK 620 4 HOH A 888 O 93.0 92.1 172.5 REMARK 620 5 HOH A1242 O 86.8 176.7 95.3 85.6 REMARK 620 6 HOH A1265 O 175.2 88.3 90.1 82.3 93.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 850 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 327 OD1 REMARK 620 2 ASP A 327 OD2 58.9 REMARK 620 3 HIS A 331 NE2 103.8 91.0 REMARK 620 4 HIS A 412 NE2 96.1 154.8 98.5 REMARK 620 5 PO4 A 856 O2 141.7 95.1 104.2 105.0 REMARK 620 6 PO4 A 856 O3 84.3 85.0 167.4 90.1 64.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 951 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 51 OD1 REMARK 620 2 SER B 102 OG 113.9 REMARK 620 3 ASP B 369 OD1 93.5 83.4 REMARK 620 4 HIS B 370 NE2 112.3 133.7 93.8 REMARK 620 5 PO4 B 956 O3 101.3 73.2 155.8 98.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 952 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 51 OD2 REMARK 620 2 THR B 155 OG1 92.8 REMARK 620 3 GLU B 322 OE2 100.3 91.5 REMARK 620 4 HOH B 970 O 84.4 177.2 89.0 REMARK 620 5 HOH B1022 O 91.7 90.8 167.7 89.4 REMARK 620 6 HOH B1262 O 175.9 87.6 83.7 95.2 84.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 950 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 327 OD2 REMARK 620 2 ASP B 327 OD1 56.6 REMARK 620 3 HIS B 331 NE2 92.0 96.8 REMARK 620 4 HIS B 412 NE2 156.2 100.7 98.2 REMARK 620 5 PO4 B 956 O2 94.0 143.3 106.4 103.5 REMARK 620 6 PO4 B 956 O3 84.1 87.6 171.3 88.3 66.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 850 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 851 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 852 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 856 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 858 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO B 950 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO B 951 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO B 952 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 956 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 958 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ED8 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH COBALT DBREF 1Y6V A 1 449 UNP P00634 PPB_ECOLI 23 471 DBREF 1Y6V B 1 449 UNP P00634 PPB_ECOLI 23 471 SEQRES 1 A 449 THR PRO GLU MET PRO VAL LEU GLU ASN ARG ALA ALA GLN SEQRES 2 A 449 GLY ASP ILE THR ALA PRO GLY GLY ALA ARG ARG LEU THR SEQRES 3 A 449 GLY ASP GLN THR ALA ALA LEU ARG ASP SER LEU SER ASP SEQRES 4 A 449 LYS PRO ALA LYS ASN ILE ILE LEU LEU ILE GLY ASP GLY SEQRES 5 A 449 MET GLY ASP SER GLU ILE THR ALA ALA ARG ASN TYR ALA SEQRES 6 A 449 GLU GLY ALA GLY GLY PHE PHE LYS GLY ILE ASP ALA LEU SEQRES 7 A 449 PRO LEU THR GLY GLN TYR THR HIS TYR ALA LEU ASN LYS SEQRES 8 A 449 LYS THR GLY LYS PRO ASP TYR VAL THR ASP SER ALA ALA SEQRES 9 A 449 SER ALA THR ALA TRP SER THR GLY VAL LYS THR TYR ASN SEQRES 10 A 449 GLY ALA LEU GLY VAL ASP ILE HIS GLU LYS ASP HIS PRO SEQRES 11 A 449 THR ILE LEU GLU MET ALA LYS ALA ALA GLY LEU ALA THR SEQRES 12 A 449 GLY ASN VAL SER THR ALA GLU LEU GLN ASP ALA THR PRO SEQRES 13 A 449 ALA ALA LEU VAL ALA HIS VAL THR SER ARG LYS CYS TYR SEQRES 14 A 449 GLY PRO SER ALA THR SER GLU LYS CYS PRO GLY ASN ALA SEQRES 15 A 449 LEU GLU LYS GLY GLY LYS GLY SER ILE THR GLU GLN LEU SEQRES 16 A 449 LEU ASN ALA ARG ALA ASP VAL THR LEU GLY GLY GLY ALA SEQRES 17 A 449 LYS THR PHE ALA GLU THR ALA THR ALA GLY GLU TRP GLN SEQRES 18 A 449 GLY LYS THR LEU ARG GLU GLN ALA GLN ALA ARG GLY TYR SEQRES 19 A 449 GLN LEU VAL SER ASP ALA ALA SER LEU ASN SER VAL THR SEQRES 20 A 449 GLU ALA ASN GLN GLN LYS PRO LEU LEU GLY LEU PHE ALA SEQRES 21 A 449 ASP GLY ASN MET PRO VAL ARG TRP LEU GLY PRO LYS ALA SEQRES 22 A 449 THR TYR HIS GLY ASN ILE ASP LYS PRO ALA VAL THR CYS SEQRES 23 A 449 THR PRO ASN PRO GLN ARG ASN ASP SER VAL PRO THR LEU SEQRES 24 A 449 ALA GLN MET THR ASP LYS ALA ILE GLU LEU LEU SER LYS SEQRES 25 A 449 ASN GLU LYS GLY PHE PHE LEU GLN VAL GLU GLY ALA SER SEQRES 26 A 449 ILE ASP LYS GLN ASP HIS ALA ALA ASN PRO CYS GLY GLN SEQRES 27 A 449 ILE GLY GLU THR VAL ASP LEU ASP GLU ALA VAL GLN ARG SEQRES 28 A 449 ALA LEU GLU PHE ALA LYS LYS GLU GLY ASN THR LEU VAL SEQRES 29 A 449 ILE VAL THR ALA ASP HIS ALA HIS ALA SER GLN ILE VAL SEQRES 30 A 449 ALA PRO ASP THR LYS ALA PRO GLY LEU THR GLN ALA LEU SEQRES 31 A 449 ASN THR LYS ASP GLY ALA VAL MET VAL MET SER TYR GLY SEQRES 32 A 449 ASN SER GLU GLU ASP SER GLN GLU HIS THR GLY SER GLN SEQRES 33 A 449 LEU ARG ILE ALA ALA TYR GLY PRO HIS ALA ALA ASN VAL SEQRES 34 A 449 VAL GLY LEU THR ASP GLN THR ASP LEU PHE TYR THR MET SEQRES 35 A 449 LYS ALA ALA LEU GLY LEU LYS SEQRES 1 B 449 THR PRO GLU MET PRO VAL LEU GLU ASN ARG ALA ALA GLN SEQRES 2 B 449 GLY ASP ILE THR ALA PRO GLY GLY ALA ARG ARG LEU THR SEQRES 3 B 449 GLY ASP GLN THR ALA ALA LEU ARG ASP SER LEU SER ASP SEQRES 4 B 449 LYS PRO ALA LYS ASN ILE ILE LEU LEU ILE GLY ASP GLY SEQRES 5 B 449 MET GLY ASP SER GLU ILE THR ALA ALA ARG ASN TYR ALA SEQRES 6 B 449 GLU GLY ALA GLY GLY PHE PHE LYS GLY ILE ASP ALA LEU SEQRES 7 B 449 PRO LEU THR GLY GLN TYR THR HIS TYR ALA LEU ASN LYS SEQRES 8 B 449 LYS THR GLY LYS PRO ASP TYR VAL THR ASP SER ALA ALA SEQRES 9 B 449 SER ALA THR ALA TRP SER THR GLY VAL LYS THR TYR ASN SEQRES 10 B 449 GLY ALA LEU GLY VAL ASP ILE HIS GLU LYS ASP HIS PRO SEQRES 11 B 449 THR ILE LEU GLU MET ALA LYS ALA ALA GLY LEU ALA THR SEQRES 12 B 449 GLY ASN VAL SER THR ALA GLU LEU GLN ASP ALA THR PRO SEQRES 13 B 449 ALA ALA LEU VAL ALA HIS VAL THR SER ARG LYS CYS TYR SEQRES 14 B 449 GLY PRO SER ALA THR SER GLU LYS CYS PRO GLY ASN ALA SEQRES 15 B 449 LEU GLU LYS GLY GLY LYS GLY SER ILE THR GLU GLN LEU SEQRES 16 B 449 LEU ASN ALA ARG ALA ASP VAL THR LEU GLY GLY GLY ALA SEQRES 17 B 449 LYS THR PHE ALA GLU THR ALA THR ALA GLY GLU TRP GLN SEQRES 18 B 449 GLY LYS THR LEU ARG GLU GLN ALA GLN ALA ARG GLY TYR SEQRES 19 B 449 GLN LEU VAL SER ASP ALA ALA SER LEU ASN SER VAL THR SEQRES 20 B 449 GLU ALA ASN GLN GLN LYS PRO LEU LEU GLY LEU PHE ALA SEQRES 21 B 449 ASP GLY ASN MET PRO VAL ARG TRP LEU GLY PRO LYS ALA SEQRES 22 B 449 THR TYR HIS GLY ASN ILE ASP LYS PRO ALA VAL THR CYS SEQRES 23 B 449 THR PRO ASN PRO GLN ARG ASN ASP SER VAL PRO THR LEU SEQRES 24 B 449 ALA GLN MET THR ASP LYS ALA ILE GLU LEU LEU SER LYS SEQRES 25 B 449 ASN GLU LYS GLY PHE PHE LEU GLN VAL GLU GLY ALA SER SEQRES 26 B 449 ILE ASP LYS GLN ASP HIS ALA ALA ASN PRO CYS GLY GLN SEQRES 27 B 449 ILE GLY GLU THR VAL ASP LEU ASP GLU ALA VAL GLN ARG SEQRES 28 B 449 ALA LEU GLU PHE ALA LYS LYS GLU GLY ASN THR LEU VAL SEQRES 29 B 449 ILE VAL THR ALA ASP HIS ALA HIS ALA SER GLN ILE VAL SEQRES 30 B 449 ALA PRO ASP THR LYS ALA PRO GLY LEU THR GLN ALA LEU SEQRES 31 B 449 ASN THR LYS ASP GLY ALA VAL MET VAL MET SER TYR GLY SEQRES 32 B 449 ASN SER GLU GLU ASP SER GLN GLU HIS THR GLY SER GLN SEQRES 33 B 449 LEU ARG ILE ALA ALA TYR GLY PRO HIS ALA ALA ASN VAL SEQRES 34 B 449 VAL GLY LEU THR ASP GLN THR ASP LEU PHE TYR THR MET SEQRES 35 B 449 LYS ALA ALA LEU GLY LEU LYS HET CO A 850 1 HET CO A 851 1 HET CO A 852 1 HET PO4 A 856 5 HET SO4 A 858 5 HET CO B 950 1 HET CO B 951 1 HET CO B 952 1 HET PO4 B 956 5 HET SO4 B 958 5 HETNAM CO COBALT (II) ION HETNAM PO4 PHOSPHATE ION HETNAM SO4 SULFATE ION FORMUL 3 CO 6(CO 2+) FORMUL 6 PO4 2(O4 P 3-) FORMUL 7 SO4 2(O4 S 2-) FORMUL 13 HOH *712(H2 O) HELIX 1 1 GLN A 29 SER A 36 1 8 HELIX 2 2 GLY A 54 GLU A 66 1 13 HELIX 3 3 GLY A 74 LEU A 78 5 5 HELIX 4 4 ASP A 101 GLY A 112 1 12 HELIX 5 5 THR A 131 ALA A 139 1 9 HELIX 6 6 ASP A 153 ALA A 158 1 6 HELIX 7 7 GLY A 170 CYS A 178 1 9 HELIX 8 8 ALA A 182 GLY A 186 5 5 HELIX 9 9 SER A 190 ARG A 199 1 10 HELIX 10 10 ALA A 208 GLU A 213 5 6 HELIX 11 11 THR A 224 ARG A 232 1 9 HELIX 12 12 ASP A 239 VAL A 246 1 8 HELIX 13 13 HIS A 276 LYS A 281 1 6 HELIX 14 14 THR A 298 SER A 311 1 14 HELIX 15 15 ALA A 324 ALA A 332 1 9 HELIX 16 16 ASN A 334 GLY A 360 1 27 HELIX 17 17 HIS A 425 VAL A 430 5 6 HELIX 18 18 GLN A 435 LEU A 446 1 12 HELIX 19 19 GLN B 29 LEU B 37 1 9 HELIX 20 20 GLY B 54 GLU B 66 1 13 HELIX 21 21 GLY B 74 LEU B 78 5 5 HELIX 22 22 ASP B 101 GLY B 112 1 12 HELIX 23 23 THR B 131 ALA B 139 1 9 HELIX 24 24 ASP B 153 ALA B 158 1 6 HELIX 25 25 GLY B 170 CYS B 178 1 9 HELIX 26 26 ALA B 182 GLY B 186 5 5 HELIX 27 27 SER B 190 ARG B 199 1 10 HELIX 28 28 GLY B 207 GLU B 213 5 7 HELIX 29 29 THR B 224 ARG B 232 1 9 HELIX 30 30 ASP B 239 ASN B 244 1 6 HELIX 31 31 HIS B 276 LYS B 281 1 6 HELIX 32 32 THR B 298 SER B 311 1 14 HELIX 33 33 ALA B 324 ALA B 332 1 9 HELIX 34 34 ASN B 334 GLY B 360 1 27 HELIX 35 35 HIS B 425 VAL B 430 5 6 HELIX 36 36 GLN B 435 GLY B 447 1 13 SHEET 1 A10 GLN A 235 VAL A 237 0 SHEET 2 A10 LEU A 255 LEU A 258 1 O LEU A 258 N VAL A 237 SHEET 3 A10 VAL A 202 GLY A 206 1 N THR A 203 O GLY A 257 SHEET 4 A10 ALA A 142 GLU A 150 1 N ALA A 149 O GLY A 206 SHEET 5 A10 PHE A 317 GLY A 323 1 O GLN A 320 N VAL A 146 SHEET 6 A10 ASN A 44 GLY A 50 1 N LEU A 47 O VAL A 321 SHEET 7 A10 THR A 362 THR A 367 1 O ILE A 365 N LEU A 48 SHEET 8 A10 LEU A 417 TYR A 422 -1 O ALA A 420 N VAL A 366 SHEET 9 A10 LEU A 80 THR A 85 -1 N LEU A 80 O ALA A 421 SHEET 10 A10 GLY A 431 ASP A 434 1 O GLY A 431 N GLN A 83 SHEET 1 B 2 ALA A 88 LEU A 89 0 SHEET 2 B 2 PRO A 96 ASP A 97 -1 O ASP A 97 N ALA A 88 SHEET 1 C 2 TRP A 268 LEU A 269 0 SHEET 2 C 2 THR A 287 PRO A 288 -1 O THR A 287 N LEU A 269 SHEET 1 D 4 THR A 274 TYR A 275 0 SHEET 2 D 4 LEU A 386 ASN A 391 -1 O THR A 387 N THR A 274 SHEET 3 D 4 VAL A 397 TYR A 402 -1 O TYR A 402 N LEU A 386 SHEET 4 D 4 GLN A 375 VAL A 377 -1 N GLN A 375 O SER A 401 SHEET 1 E10 GLN B 235 VAL B 237 0 SHEET 2 E10 LEU B 255 LEU B 258 1 O LEU B 256 N GLN B 235 SHEET 3 E10 VAL B 202 GLY B 206 1 N THR B 203 O GLY B 257 SHEET 4 E10 ALA B 142 GLU B 150 1 N SER B 147 O LEU B 204 SHEET 5 E10 PHE B 317 GLY B 323 1 O GLN B 320 N VAL B 146 SHEET 6 E10 ASN B 44 GLY B 50 1 N LEU B 47 O VAL B 321 SHEET 7 E10 THR B 362 ALA B 368 1 O ILE B 365 N LEU B 48 SHEET 8 E10 LEU B 417 TYR B 422 -1 O TYR B 422 N VAL B 364 SHEET 9 E10 LEU B 80 THR B 85 -1 N GLY B 82 O ILE B 419 SHEET 10 E10 GLY B 431 ASP B 434 1 O GLY B 431 N GLN B 83 SHEET 1 F 2 ALA B 88 LEU B 89 0 SHEET 2 F 2 PRO B 96 ASP B 97 -1 O ASP B 97 N ALA B 88 SHEET 1 G 2 TRP B 268 LEU B 269 0 SHEET 2 G 2 THR B 287 PRO B 288 -1 O THR B 287 N LEU B 269 SHEET 1 H 4 THR B 274 TYR B 275 0 SHEET 2 H 4 LEU B 386 ASN B 391 -1 O THR B 387 N THR B 274 SHEET 3 H 4 VAL B 397 TYR B 402 -1 O MET B 398 N LEU B 390 SHEET 4 H 4 GLN B 375 VAL B 377 -1 N GLN B 375 O SER B 401 SSBOND 1 CYS A 168 CYS A 178 1555 1555 2.05 SSBOND 2 CYS A 286 CYS A 336 1555 1555 2.07 SSBOND 3 CYS B 168 CYS B 178 1555 1555 2.08 SSBOND 4 CYS B 286 CYS B 336 1555 1555 2.08 LINK O2 SO4 A 858 NZ LYS B 449 1555 8566 1.89 LINK OD1 ASP A 51 CO CO A 851 1555 1555 1.87 LINK OD2 ASP A 51 CO CO A 852 1555 1555 1.85 LINK OG SER A 102 CO CO A 851 1555 1555 1.73 LINK OG1 THR A 155 CO CO A 852 1555 1555 2.15 LINK OE2 GLU A 322 CO CO A 852 1555 1555 1.97 LINK OD1 ASP A 327 CO CO A 850 1555 1555 1.97 LINK OD2 ASP A 327 CO CO A 850 1555 1555 2.41 LINK NE2 HIS A 331 CO CO A 850 1555 1555 2.00 LINK OD1 ASP A 369 CO CO A 851 1555 1555 2.05 LINK NE2 HIS A 370 CO CO A 851 1555 1555 1.93 LINK NE2 HIS A 412 CO CO A 850 1555 1555 2.06 LINK CO CO A 850 O2 PO4 A 856 1555 1555 2.23 LINK CO CO A 850 O3 PO4 A 856 1555 1555 2.26 LINK CO CO A 851 O3 PO4 A 856 1555 1555 2.07 LINK CO CO A 852 O HOH A 888 1555 1555 2.12 LINK CO CO A 852 O HOH A1242 1555 1555 2.17 LINK CO CO A 852 O HOH A1265 1555 1555 2.01 LINK OD1 ASP B 51 CO CO B 951 1555 1555 2.00 LINK OD2 ASP B 51 CO CO B 952 1555 1555 2.03 LINK OG SER B 102 CO CO B 951 1555 1555 2.08 LINK OG1 THR B 155 CO CO B 952 1555 1555 2.14 LINK OE2 GLU B 322 CO CO B 952 1555 1555 1.84 LINK OD2 ASP B 327 CO CO B 950 1555 1555 2.43 LINK OD1 ASP B 327 CO CO B 950 1555 1555 2.07 LINK NE2 HIS B 331 CO CO B 950 1555 1555 2.04 LINK OD1 ASP B 369 CO CO B 951 1555 1555 2.03 LINK NE2 HIS B 370 CO CO B 951 1555 1555 2.00 LINK NE2 HIS B 412 CO CO B 950 1555 1555 2.10 LINK CO CO B 950 O2 PO4 B 956 1555 1555 2.04 LINK CO CO B 950 O3 PO4 B 956 1555 1555 2.41 LINK CO CO B 951 O3 PO4 B 956 1555 1555 1.89 LINK CO CO B 952 O HOH B 970 1555 1555 2.11 LINK CO CO B 952 O HOH B1022 1555 1555 2.06 LINK CO CO B 952 O HOH B1262 1555 1555 2.05 SITE 1 AC1 4 ASP A 327 HIS A 331 HIS A 412 PO4 A 856 SITE 1 AC2 6 ASP A 51 SER A 102 ASP A 327 ASP A 369 SITE 2 AC2 6 HIS A 370 PO4 A 856 SITE 1 AC3 6 ASP A 51 THR A 155 GLU A 322 HOH A 888 SITE 2 AC3 6 HOH A1242 HOH A1265 SITE 1 AC4 13 ASP A 51 ASP A 101 SER A 102 ARG A 166 SITE 2 AC4 13 ASP A 327 HIS A 331 HIS A 370 HIS A 412 SITE 3 AC4 13 CO A 850 CO A 851 HOH A 888 HOH A 987 SITE 4 AC4 13 HOH A1228 SITE 1 AC5 7 ARG A 267 TRP A 268 ARG A 292 HOH A 859 SITE 2 AC5 7 HOH A 902 HOH A1218 LYS B 449 SITE 1 AC6 4 ASP B 327 HIS B 331 HIS B 412 PO4 B 956 SITE 1 AC7 5 ASP B 51 SER B 102 ASP B 369 HIS B 370 SITE 2 AC7 5 PO4 B 956 SITE 1 AC8 7 ASP B 51 ASP B 153 THR B 155 GLU B 322 SITE 2 AC8 7 HOH B 970 HOH B1022 HOH B1262 SITE 1 AC9 13 ASP B 51 ASP B 101 SER B 102 ARG B 166 SITE 2 AC9 13 ASP B 327 HIS B 331 HIS B 370 HIS B 412 SITE 3 AC9 13 CO B 950 CO B 951 HOH B1022 HOH B1024 SITE 4 AC9 13 HOH B1168 SITE 1 BC1 4 ARG B 267 TRP B 268 ARG B 292 HOH B1109 CRYST1 76.475 164.257 192.819 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013076 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006088 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005186 0.00000