data_1Y71 # _entry.id 1Y71 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1Y71 RCSB RCSB031196 WWPDB D_1000031196 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC25178 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 1Y71 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2004-12-07 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Osipiuk, J.' 1 'Zhou, M.' 2 'Moy, S.' 3 'Collart, F.' 4 'Joachimiak, A.' 5 'Midwest Center for Structural Genomics (MCSG)' 6 # _citation.id primary _citation.title 'X-ray crystal structure of kinase-associated protein B from Bacillus cereus' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Osipiuk, J.' 1 primary 'Zhou, M.' 2 primary 'Moy, S.' 3 primary 'Collart, F.' 4 primary 'Joachimiak, A.' 5 # _cell.length_a 27.197 _cell.length_b 99.403 _cell.length_c 101.755 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 1Y71 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 # _symmetry.Int_Tables_number 19 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 1Y71 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Kinase-associated protein B' 15057.543 2 ? ? ? ? 2 water nat water 18.015 108 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)RETFEIGEIVTGIYKTGKYIGEVTNSRPGSYVVKVLAVLKHPVQGDLHNVKQANVPFFHERRALAFREQTNI PEQ(MSE)VKKYEGEIPDYTESLKLALETQ(MSE)NSFSEDDSPFAERSLETLQQLKKDYKL ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMRETFEIGEIVTGIYKTGKYIGEVTNSRPGSYVVKVLAVLKHPVQGDLHNVKQANVPFFHERRALAFREQTNIPEQM VKKYEGEIPDYTESLKLALETQMNSFSEDDSPFAERSLETLQQLKKDYKL ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier APC25178 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 ARG n 1 6 GLU n 1 7 THR n 1 8 PHE n 1 9 GLU n 1 10 ILE n 1 11 GLY n 1 12 GLU n 1 13 ILE n 1 14 VAL n 1 15 THR n 1 16 GLY n 1 17 ILE n 1 18 TYR n 1 19 LYS n 1 20 THR n 1 21 GLY n 1 22 LYS n 1 23 TYR n 1 24 ILE n 1 25 GLY n 1 26 GLU n 1 27 VAL n 1 28 THR n 1 29 ASN n 1 30 SER n 1 31 ARG n 1 32 PRO n 1 33 GLY n 1 34 SER n 1 35 TYR n 1 36 VAL n 1 37 VAL n 1 38 LYS n 1 39 VAL n 1 40 LEU n 1 41 ALA n 1 42 VAL n 1 43 LEU n 1 44 LYS n 1 45 HIS n 1 46 PRO n 1 47 VAL n 1 48 GLN n 1 49 GLY n 1 50 ASP n 1 51 LEU n 1 52 HIS n 1 53 ASN n 1 54 VAL n 1 55 LYS n 1 56 GLN n 1 57 ALA n 1 58 ASN n 1 59 VAL n 1 60 PRO n 1 61 PHE n 1 62 PHE n 1 63 HIS n 1 64 GLU n 1 65 ARG n 1 66 ARG n 1 67 ALA n 1 68 LEU n 1 69 ALA n 1 70 PHE n 1 71 ARG n 1 72 GLU n 1 73 GLN n 1 74 THR n 1 75 ASN n 1 76 ILE n 1 77 PRO n 1 78 GLU n 1 79 GLN n 1 80 MSE n 1 81 VAL n 1 82 LYS n 1 83 LYS n 1 84 TYR n 1 85 GLU n 1 86 GLY n 1 87 GLU n 1 88 ILE n 1 89 PRO n 1 90 ASP n 1 91 TYR n 1 92 THR n 1 93 GLU n 1 94 SER n 1 95 LEU n 1 96 LYS n 1 97 LEU n 1 98 ALA n 1 99 LEU n 1 100 GLU n 1 101 THR n 1 102 GLN n 1 103 MSE n 1 104 ASN n 1 105 SER n 1 106 PHE n 1 107 SER n 1 108 GLU n 1 109 ASP n 1 110 ASP n 1 111 SER n 1 112 PRO n 1 113 PHE n 1 114 ALA n 1 115 GLU n 1 116 ARG n 1 117 SER n 1 118 LEU n 1 119 GLU n 1 120 THR n 1 121 LEU n 1 122 GLN n 1 123 GLN n 1 124 LEU n 1 125 LYS n 1 126 LYS n 1 127 ASP n 1 128 TYR n 1 129 LYS n 1 130 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Bacillus _entity_src_gen.pdbx_gene_src_gene BC4909 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus cereus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1396 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 14579 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q816F1_BACCR _struct_ref.pdbx_db_accession Q816F1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MRETFEIGEIVTGIYKTGKYIGEVTNSRPGSYVVKVLAVLKHPVQGDLHNVKQANVPFFHERRALAFREQTNIPEQMVKK YEGEIPDYTESLKLALETQMNSFSEDDSPFAERSLETLQQLKKDYKL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1Y71 A 4 ? 130 ? Q816F1 1 ? 127 ? 1 127 2 1 1Y71 B 4 ? 130 ? Q816F1 1 ? 127 ? 1 127 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1Y71 SER A 1 ? UNP Q816F1 ? ? 'CLONING ARTIFACT' -2 1 1 1Y71 ASN A 2 ? UNP Q816F1 ? ? 'CLONING ARTIFACT' -1 2 1 1Y71 ALA A 3 ? UNP Q816F1 ? ? 'CLONING ARTIFACT' 0 3 1 1Y71 MSE A 4 ? UNP Q816F1 MET 1 'MODIFIED RESIDUE' 1 4 1 1Y71 MSE A 80 ? UNP Q816F1 MET 77 'MODIFIED RESIDUE' 77 5 1 1Y71 MSE A 103 ? UNP Q816F1 MET 100 'MODIFIED RESIDUE' 100 6 2 1Y71 SER B 1 ? UNP Q816F1 ? ? 'CLONING ARTIFACT' -2 7 2 1Y71 ASN B 2 ? UNP Q816F1 ? ? 'CLONING ARTIFACT' -1 8 2 1Y71 ALA B 3 ? UNP Q816F1 ? ? 'CLONING ARTIFACT' 0 9 2 1Y71 MSE B 4 ? UNP Q816F1 MET 1 'MODIFIED RESIDUE' 1 10 2 1Y71 MSE B 80 ? UNP Q816F1 MET 77 'MODIFIED RESIDUE' 77 11 2 1Y71 MSE B 103 ? UNP Q816F1 MET 100 'MODIFIED RESIDUE' 100 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1Y71 _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 46.3 _exptl_crystal.density_Matthews 2.3 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.temp 287 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '100 mM Sodium Acetate, 20% PEG 3350, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 287K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type SBC-3 _diffrn_detector.pdbx_collection_date 2004-12-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979456 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.979456 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM # _reflns.d_resolution_low 40.00 _reflns.d_resolution_high 1.95 _reflns.number_obs 20380 _reflns.percent_possible_obs 97.2 _reflns.pdbx_Rmerge_I_obs 0.094 _reflns.pdbx_redundancy 7.90 _reflns.pdbx_chi_squared 1.126 _reflns.entry_id 1Y71 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 20967 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 19.7 _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_low 2.00 _reflns_shell.d_res_high 1.95 _reflns_shell.number_unique_all 998 _reflns_shell.percent_possible_all 75.7 _reflns_shell.Rmerge_I_obs 0.527 _reflns_shell.pdbx_redundancy 4.2 _reflns_shell.pdbx_chi_squared 0.694 _reflns_shell.number_unique_obs ? _reflns_shell.meanI_over_sigI_obs 1.46 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.ls_d_res_high 1.950 _refine.ls_d_res_low 40.000 _refine.pdbx_ls_sigma_F 0 _refine.ls_percent_reflns_obs 97.090 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details random _refine.ls_R_factor_all 0.216 _refine.ls_R_factor_R_work 0.214 _refine.B_iso_mean 29.708 _refine.aniso_B[1][1] 1.170 _refine.aniso_B[2][2] 0.190 _refine.aniso_B[3][3] -1.360 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.938 _refine.overall_SU_R_Cruickshank_DPI 0.164 _refine.overall_SU_ML 0.085 _refine.overall_SU_B 5.775 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.entry_id 1Y71 _refine.pdbx_ls_sigma_I 0 _refine.ls_number_reflns_all 20319 _refine.ls_number_reflns_obs 20319 _refine.ls_number_reflns_R_free 2025 _refine.ls_R_factor_obs 0.216 _refine.ls_R_factor_R_free 0.265 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ;All data were used in final round of refinement. R-factor-all corresponds to deposited file. R-factors, R-work and R-free, are taken from second to last round of refinement which used test data set. ; _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1787 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 108 _refine_hist.number_atoms_total 1895 _refine_hist.d_res_high 1.950 _refine_hist.d_res_low 40.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.weight _refine_ls_restr.dev_ideal_target _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1817 0.016 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2446 1.396 1.987 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 217 5.541 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 86 34.020 24.884 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 346 15.897 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 10 16.042 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 272 0.097 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1351 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 787 0.213 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1240 0.305 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 100 0.128 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 48 0.200 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 5 0.087 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1155 1.296 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1785 1.730 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 772 3.040 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 661 4.628 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.95 _refine_ls_shell.d_res_low 2.002 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 75.680 _refine_ls_shell.number_reflns_R_work 1105 _refine_ls_shell.R_factor_R_work 0.258 _refine_ls_shell.R_factor_R_free 0.349 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 114 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_obs 1105 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1Y71 _struct.title 'X-ray crystal structure of kinase-associated protein B from Bacillus cereus' _struct.pdbx_descriptor 'Kinase-associated protein B' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1Y71 _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;structural genomics, kinase-associated protein B, Midwest Center for Structural Genomics, MCSG, Protein Structure Initiative, PSI, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 90 ? SER A 105 ? ASP A 87 SER A 102 1 ? 16 HELX_P HELX_P2 2 SER A 111 ? TYR A 128 ? SER A 108 TYR A 125 1 ? 18 HELX_P HELX_P3 3 ASP B 90 ? SER B 105 ? ASP B 87 SER B 102 1 ? 16 HELX_P HELX_P4 4 SER B 111 ? TYR B 128 ? SER B 108 TYR B 125 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLN 79 C ? ? ? 1_555 A MSE 80 N ? ? A GLN 76 A MSE 77 1_555 ? ? ? ? ? ? ? 1.333 ? covale2 covale ? ? A MSE 80 C ? ? ? 1_555 A VAL 81 N ? ? A MSE 77 A VAL 78 1_555 ? ? ? ? ? ? ? 1.335 ? covale3 covale ? ? A GLN 102 C ? ? ? 1_555 A MSE 103 N ? ? A GLN 99 A MSE 100 1_555 ? ? ? ? ? ? ? 1.335 ? covale4 covale ? ? A MSE 103 C ? ? ? 1_555 A ASN 104 N ? ? A MSE 100 A ASN 101 1_555 ? ? ? ? ? ? ? 1.339 ? covale5 covale ? ? B GLN 79 C ? ? ? 1_555 B MSE 80 N ? ? B GLN 76 B MSE 77 1_555 ? ? ? ? ? ? ? 1.332 ? covale6 covale ? ? B MSE 80 C ? ? ? 1_555 B VAL 81 N ? ? B MSE 77 B VAL 78 1_555 ? ? ? ? ? ? ? 1.335 ? covale7 covale ? ? B GLN 102 C ? ? ? 1_555 B MSE 103 N ? ? B GLN 99 B MSE 100 1_555 ? ? ? ? ? ? ? 1.323 ? covale8 covale ? ? B MSE 103 C ? ? ? 1_555 B ASN 104 N ? ? B MSE 100 B ASN 101 1_555 ? ? ? ? ? ? ? 1.332 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 73 ? PRO A 77 ? GLN A 70 PRO A 74 A 2 SER A 34 ? LYS A 44 ? SER A 31 LYS A 41 A 3 GLY A 21 ? ARG A 31 ? GLY A 18 ARG A 28 A 4 ILE A 13 ? TYR A 18 ? ILE A 10 TYR A 15 A 5 VAL A 81 ? LYS A 83 ? VAL A 78 LYS A 80 B 1 GLN B 73 ? PRO B 77 ? GLN B 70 PRO B 74 B 2 SER B 34 ? LYS B 44 ? SER B 31 LYS B 41 B 3 GLY B 21 ? ARG B 31 ? GLY B 18 ARG B 28 B 4 ILE B 13 ? TYR B 18 ? ILE B 10 TYR B 15 B 5 VAL B 81 ? LYS B 83 ? VAL B 78 LYS B 80 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O THR A 74 ? O THR A 71 N VAL A 37 ? N VAL A 34 A 2 3 O LEU A 43 ? O LEU A 40 N LYS A 22 ? N LYS A 19 A 3 4 O GLY A 25 ? O GLY A 22 N VAL A 14 ? N VAL A 11 A 4 5 N THR A 15 ? N THR A 12 O LYS A 82 ? O LYS A 79 B 1 2 O ILE B 76 ? O ILE B 73 N TYR B 35 ? N TYR B 32 B 2 3 O LEU B 40 ? O LEU B 37 N ILE B 24 ? N ILE B 21 B 3 4 O TYR B 23 ? O TYR B 20 N GLY B 16 ? N GLY B 13 B 4 5 N THR B 15 ? N THR B 12 O LYS B 82 ? O LYS B 79 # _atom_sites.entry_id 1Y71 _atom_sites.fract_transf_matrix[1][1] 0.0368 _atom_sites.fract_transf_matrix[1][2] 0.0000 _atom_sites.fract_transf_matrix[1][3] 0.0000 _atom_sites.fract_transf_matrix[2][1] 0.0000 _atom_sites.fract_transf_matrix[2][2] 0.0101 _atom_sites.fract_transf_matrix[2][3] 0.0000 _atom_sites.fract_transf_matrix[3][1] 0.0000 _atom_sites.fract_transf_matrix[3][2] 0.0000 _atom_sites.fract_transf_matrix[3][3] 0.0098 _atom_sites.fract_transf_vector[1] 0.0000 _atom_sites.fract_transf_vector[2] 0.0000 _atom_sites.fract_transf_vector[3] 0.0000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MSE 4 1 ? ? ? A . n A 1 5 ARG 5 2 ? ? ? A . n A 1 6 GLU 6 3 ? ? ? A . n A 1 7 THR 7 4 4 THR THR A . n A 1 8 PHE 8 5 5 PHE PHE A . n A 1 9 GLU 9 6 6 GLU GLU A . n A 1 10 ILE 10 7 7 ILE ILE A . n A 1 11 GLY 11 8 8 GLY GLY A . n A 1 12 GLU 12 9 9 GLU GLU A . n A 1 13 ILE 13 10 10 ILE ILE A . n A 1 14 VAL 14 11 11 VAL VAL A . n A 1 15 THR 15 12 12 THR THR A . n A 1 16 GLY 16 13 13 GLY GLY A . n A 1 17 ILE 17 14 14 ILE ILE A . n A 1 18 TYR 18 15 15 TYR TYR A . n A 1 19 LYS 19 16 16 LYS LYS A . n A 1 20 THR 20 17 17 THR THR A . n A 1 21 GLY 21 18 18 GLY GLY A . n A 1 22 LYS 22 19 19 LYS LYS A . n A 1 23 TYR 23 20 20 TYR TYR A . n A 1 24 ILE 24 21 21 ILE ILE A . n A 1 25 GLY 25 22 22 GLY GLY A . n A 1 26 GLU 26 23 23 GLU GLU A . n A 1 27 VAL 27 24 24 VAL VAL A . n A 1 28 THR 28 25 25 THR THR A . n A 1 29 ASN 29 26 26 ASN ASN A . n A 1 30 SER 30 27 27 SER SER A . n A 1 31 ARG 31 28 28 ARG ARG A . n A 1 32 PRO 32 29 29 PRO PRO A . n A 1 33 GLY 33 30 30 GLY GLY A . n A 1 34 SER 34 31 31 SER SER A . n A 1 35 TYR 35 32 32 TYR TYR A . n A 1 36 VAL 36 33 33 VAL VAL A . n A 1 37 VAL 37 34 34 VAL VAL A . n A 1 38 LYS 38 35 35 LYS LYS A . n A 1 39 VAL 39 36 36 VAL VAL A . n A 1 40 LEU 40 37 37 LEU LEU A . n A 1 41 ALA 41 38 38 ALA ALA A . n A 1 42 VAL 42 39 39 VAL VAL A . n A 1 43 LEU 43 40 40 LEU LEU A . n A 1 44 LYS 44 41 41 LYS LYS A . n A 1 45 HIS 45 42 42 HIS HIS A . n A 1 46 PRO 46 43 43 PRO PRO A . n A 1 47 VAL 47 44 44 VAL VAL A . n A 1 48 GLN 48 45 45 GLN GLN A . n A 1 49 GLY 49 46 ? ? ? A . n A 1 50 ASP 50 47 ? ? ? A . n A 1 51 LEU 51 48 ? ? ? A . n A 1 52 HIS 52 49 ? ? ? A . n A 1 53 ASN 53 50 ? ? ? A . n A 1 54 VAL 54 51 ? ? ? A . n A 1 55 LYS 55 52 ? ? ? A . n A 1 56 GLN 56 53 ? ? ? A . n A 1 57 ALA 57 54 ? ? ? A . n A 1 58 ASN 58 55 ? ? ? A . n A 1 59 VAL 59 56 ? ? ? A . n A 1 60 PRO 60 57 ? ? ? A . n A 1 61 PHE 61 58 ? ? ? A . n A 1 62 PHE 62 59 ? ? ? A . n A 1 63 HIS 63 60 ? ? ? A . n A 1 64 GLU 64 61 61 GLU GLU A . n A 1 65 ARG 65 62 62 ARG ARG A . n A 1 66 ARG 66 63 63 ARG ARG A . n A 1 67 ALA 67 64 64 ALA ALA A . n A 1 68 LEU 68 65 65 LEU LEU A . n A 1 69 ALA 69 66 66 ALA ALA A . n A 1 70 PHE 70 67 67 PHE PHE A . n A 1 71 ARG 71 68 68 ARG ARG A . n A 1 72 GLU 72 69 69 GLU GLU A . n A 1 73 GLN 73 70 70 GLN GLN A . n A 1 74 THR 74 71 71 THR THR A . n A 1 75 ASN 75 72 72 ASN ASN A . n A 1 76 ILE 76 73 73 ILE ILE A . n A 1 77 PRO 77 74 74 PRO PRO A . n A 1 78 GLU 78 75 75 GLU GLU A . n A 1 79 GLN 79 76 76 GLN GLN A . n A 1 80 MSE 80 77 77 MSE MSE A . n A 1 81 VAL 81 78 78 VAL VAL A . n A 1 82 LYS 82 79 79 LYS LYS A . n A 1 83 LYS 83 80 80 LYS LYS A . n A 1 84 TYR 84 81 81 TYR TYR A . n A 1 85 GLU 85 82 82 GLU GLU A . n A 1 86 GLY 86 83 83 GLY GLY A . n A 1 87 GLU 87 84 84 GLU GLU A . n A 1 88 ILE 88 85 85 ILE ILE A . n A 1 89 PRO 89 86 86 PRO PRO A . n A 1 90 ASP 90 87 87 ASP ASP A . n A 1 91 TYR 91 88 88 TYR TYR A . n A 1 92 THR 92 89 89 THR THR A . n A 1 93 GLU 93 90 90 GLU GLU A . n A 1 94 SER 94 91 91 SER SER A . n A 1 95 LEU 95 92 92 LEU LEU A . n A 1 96 LYS 96 93 93 LYS LYS A . n A 1 97 LEU 97 94 94 LEU LEU A . n A 1 98 ALA 98 95 95 ALA ALA A . n A 1 99 LEU 99 96 96 LEU LEU A . n A 1 100 GLU 100 97 97 GLU GLU A . n A 1 101 THR 101 98 98 THR THR A . n A 1 102 GLN 102 99 99 GLN GLN A . n A 1 103 MSE 103 100 100 MSE MSE A . n A 1 104 ASN 104 101 101 ASN ASN A . n A 1 105 SER 105 102 102 SER SER A . n A 1 106 PHE 106 103 103 PHE PHE A . n A 1 107 SER 107 104 104 SER SER A . n A 1 108 GLU 108 105 105 GLU GLU A . n A 1 109 ASP 109 106 106 ASP ASP A . n A 1 110 ASP 110 107 107 ASP ASP A . n A 1 111 SER 111 108 108 SER SER A . n A 1 112 PRO 112 109 109 PRO PRO A . n A 1 113 PHE 113 110 110 PHE PHE A . n A 1 114 ALA 114 111 111 ALA ALA A . n A 1 115 GLU 115 112 112 GLU GLU A . n A 1 116 ARG 116 113 113 ARG ARG A . n A 1 117 SER 117 114 114 SER SER A . n A 1 118 LEU 118 115 115 LEU LEU A . n A 1 119 GLU 119 116 116 GLU GLU A . n A 1 120 THR 120 117 117 THR THR A . n A 1 121 LEU 121 118 118 LEU LEU A . n A 1 122 GLN 122 119 119 GLN GLN A . n A 1 123 GLN 123 120 120 GLN GLN A . n A 1 124 LEU 124 121 121 LEU LEU A . n A 1 125 LYS 125 122 122 LYS LYS A . n A 1 126 LYS 126 123 123 LYS LYS A . n A 1 127 ASP 127 124 124 ASP ASP A . n A 1 128 TYR 128 125 125 TYR TYR A . n A 1 129 LYS 129 126 126 LYS LYS A . n A 1 130 LEU 130 127 127 LEU LEU A . n B 1 1 SER 1 -2 ? ? ? B . n B 1 2 ASN 2 -1 ? ? ? B . n B 1 3 ALA 3 0 ? ? ? B . n B 1 4 MSE 4 1 ? ? ? B . n B 1 5 ARG 5 2 ? ? ? B . n B 1 6 GLU 6 3 ? ? ? B . n B 1 7 THR 7 4 4 THR THR B . n B 1 8 PHE 8 5 5 PHE PHE B . n B 1 9 GLU 9 6 6 GLU GLU B . n B 1 10 ILE 10 7 7 ILE ILE B . n B 1 11 GLY 11 8 8 GLY GLY B . n B 1 12 GLU 12 9 9 GLU GLU B . n B 1 13 ILE 13 10 10 ILE ILE B . n B 1 14 VAL 14 11 11 VAL VAL B . n B 1 15 THR 15 12 12 THR THR B . n B 1 16 GLY 16 13 13 GLY GLY B . n B 1 17 ILE 17 14 14 ILE ILE B . n B 1 18 TYR 18 15 15 TYR TYR B . n B 1 19 LYS 19 16 16 LYS LYS B . n B 1 20 THR 20 17 17 THR THR B . n B 1 21 GLY 21 18 18 GLY GLY B . n B 1 22 LYS 22 19 19 LYS LYS B . n B 1 23 TYR 23 20 20 TYR TYR B . n B 1 24 ILE 24 21 21 ILE ILE B . n B 1 25 GLY 25 22 22 GLY GLY B . n B 1 26 GLU 26 23 23 GLU GLU B . n B 1 27 VAL 27 24 24 VAL VAL B . n B 1 28 THR 28 25 25 THR THR B . n B 1 29 ASN 29 26 26 ASN ASN B . n B 1 30 SER 30 27 27 SER SER B . n B 1 31 ARG 31 28 28 ARG ARG B . n B 1 32 PRO 32 29 29 PRO PRO B . n B 1 33 GLY 33 30 30 GLY GLY B . n B 1 34 SER 34 31 31 SER SER B . n B 1 35 TYR 35 32 32 TYR TYR B . n B 1 36 VAL 36 33 33 VAL VAL B . n B 1 37 VAL 37 34 34 VAL VAL B . n B 1 38 LYS 38 35 35 LYS LYS B . n B 1 39 VAL 39 36 36 VAL VAL B . n B 1 40 LEU 40 37 37 LEU LEU B . n B 1 41 ALA 41 38 38 ALA ALA B . n B 1 42 VAL 42 39 39 VAL VAL B . n B 1 43 LEU 43 40 40 LEU LEU B . n B 1 44 LYS 44 41 41 LYS LYS B . n B 1 45 HIS 45 42 42 HIS HIS B . n B 1 46 PRO 46 43 43 PRO PRO B . n B 1 47 VAL 47 44 44 VAL VAL B . n B 1 48 GLN 48 45 45 GLN GLN B . n B 1 49 GLY 49 46 46 GLY GLY B . n B 1 50 ASP 50 47 ? ? ? B . n B 1 51 LEU 51 48 ? ? ? B . n B 1 52 HIS 52 49 ? ? ? B . n B 1 53 ASN 53 50 ? ? ? B . n B 1 54 VAL 54 51 ? ? ? B . n B 1 55 LYS 55 52 ? ? ? B . n B 1 56 GLN 56 53 ? ? ? B . n B 1 57 ALA 57 54 ? ? ? B . n B 1 58 ASN 58 55 ? ? ? B . n B 1 59 VAL 59 56 ? ? ? B . n B 1 60 PRO 60 57 ? ? ? B . n B 1 61 PHE 61 58 ? ? ? B . n B 1 62 PHE 62 59 59 PHE PHE B . n B 1 63 HIS 63 60 60 HIS HIS B . n B 1 64 GLU 64 61 61 GLU GLU B . n B 1 65 ARG 65 62 62 ARG ARG B . n B 1 66 ARG 66 63 63 ARG ARG B . n B 1 67 ALA 67 64 64 ALA ALA B . n B 1 68 LEU 68 65 65 LEU LEU B . n B 1 69 ALA 69 66 66 ALA ALA B . n B 1 70 PHE 70 67 67 PHE PHE B . n B 1 71 ARG 71 68 68 ARG ARG B . n B 1 72 GLU 72 69 69 GLU GLU B . n B 1 73 GLN 73 70 70 GLN GLN B . n B 1 74 THR 74 71 71 THR THR B . n B 1 75 ASN 75 72 72 ASN ASN B . n B 1 76 ILE 76 73 73 ILE ILE B . n B 1 77 PRO 77 74 74 PRO PRO B . n B 1 78 GLU 78 75 75 GLU GLU B . n B 1 79 GLN 79 76 76 GLN GLN B . n B 1 80 MSE 80 77 77 MSE MSE B . n B 1 81 VAL 81 78 78 VAL VAL B . n B 1 82 LYS 82 79 79 LYS LYS B . n B 1 83 LYS 83 80 80 LYS LYS B . n B 1 84 TYR 84 81 81 TYR TYR B . n B 1 85 GLU 85 82 82 GLU GLU B . n B 1 86 GLY 86 83 83 GLY GLY B . n B 1 87 GLU 87 84 84 GLU GLU B . n B 1 88 ILE 88 85 85 ILE ILE B . n B 1 89 PRO 89 86 86 PRO PRO B . n B 1 90 ASP 90 87 87 ASP ASP B . n B 1 91 TYR 91 88 88 TYR TYR B . n B 1 92 THR 92 89 89 THR THR B . n B 1 93 GLU 93 90 90 GLU GLU B . n B 1 94 SER 94 91 91 SER SER B . n B 1 95 LEU 95 92 92 LEU LEU B . n B 1 96 LYS 96 93 93 LYS LYS B . n B 1 97 LEU 97 94 94 LEU LEU B . n B 1 98 ALA 98 95 95 ALA ALA B . n B 1 99 LEU 99 96 96 LEU LEU B . n B 1 100 GLU 100 97 97 GLU GLU B . n B 1 101 THR 101 98 98 THR THR B . n B 1 102 GLN 102 99 99 GLN GLN B . n B 1 103 MSE 103 100 100 MSE MSE B . n B 1 104 ASN 104 101 101 ASN ASN B . n B 1 105 SER 105 102 102 SER SER B . n B 1 106 PHE 106 103 103 PHE PHE B . n B 1 107 SER 107 104 104 SER SER B . n B 1 108 GLU 108 105 105 GLU GLU B . n B 1 109 ASP 109 106 106 ASP ASP B . n B 1 110 ASP 110 107 107 ASP ASP B . n B 1 111 SER 111 108 108 SER SER B . n B 1 112 PRO 112 109 109 PRO PRO B . n B 1 113 PHE 113 110 110 PHE PHE B . n B 1 114 ALA 114 111 111 ALA ALA B . n B 1 115 GLU 115 112 112 GLU GLU B . n B 1 116 ARG 116 113 113 ARG ARG B . n B 1 117 SER 117 114 114 SER SER B . n B 1 118 LEU 118 115 115 LEU LEU B . n B 1 119 GLU 119 116 116 GLU GLU B . n B 1 120 THR 120 117 117 THR THR B . n B 1 121 LEU 121 118 118 LEU LEU B . n B 1 122 GLN 122 119 119 GLN GLN B . n B 1 123 GLN 123 120 120 GLN GLN B . n B 1 124 LEU 124 121 121 LEU LEU B . n B 1 125 LYS 125 122 122 LYS LYS B . n B 1 126 LYS 126 123 123 LYS LYS B . n B 1 127 ASP 127 124 124 ASP ASP B . n B 1 128 TYR 128 125 125 TYR TYR B . n B 1 129 LYS 129 126 126 LYS LYS B . n B 1 130 LEU 130 127 127 LEU LEU B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 128 4 HOH HOH A . C 2 HOH 2 129 7 HOH HOH A . C 2 HOH 3 130 8 HOH HOH A . C 2 HOH 4 131 9 HOH HOH A . C 2 HOH 5 132 10 HOH HOH A . C 2 HOH 6 133 11 HOH HOH A . C 2 HOH 7 134 13 HOH HOH A . C 2 HOH 8 135 14 HOH HOH A . C 2 HOH 9 136 15 HOH HOH A . C 2 HOH 10 137 19 HOH HOH A . C 2 HOH 11 138 20 HOH HOH A . C 2 HOH 12 139 22 HOH HOH A . C 2 HOH 13 140 23 HOH HOH A . C 2 HOH 14 141 26 HOH HOH A . C 2 HOH 15 142 27 HOH HOH A . C 2 HOH 16 143 29 HOH HOH A . C 2 HOH 17 144 32 HOH HOH A . C 2 HOH 18 145 34 HOH HOH A . C 2 HOH 19 146 38 HOH HOH A . C 2 HOH 20 147 39 HOH HOH A . C 2 HOH 21 148 40 HOH HOH A . C 2 HOH 22 149 41 HOH HOH A . C 2 HOH 23 150 43 HOH HOH A . C 2 HOH 24 151 45 HOH HOH A . C 2 HOH 25 152 47 HOH HOH A . C 2 HOH 26 153 48 HOH HOH A . C 2 HOH 27 154 49 HOH HOH A . C 2 HOH 28 155 50 HOH HOH A . C 2 HOH 29 156 52 HOH HOH A . C 2 HOH 30 157 56 HOH HOH A . C 2 HOH 31 158 59 HOH HOH A . C 2 HOH 32 159 61 HOH HOH A . C 2 HOH 33 160 62 HOH HOH A . C 2 HOH 34 161 63 HOH HOH A . C 2 HOH 35 162 64 HOH HOH A . C 2 HOH 36 163 66 HOH HOH A . C 2 HOH 37 164 70 HOH HOH A . C 2 HOH 38 165 72 HOH HOH A . C 2 HOH 39 166 73 HOH HOH A . C 2 HOH 40 167 74 HOH HOH A . C 2 HOH 41 168 79 HOH HOH A . C 2 HOH 42 169 80 HOH HOH A . C 2 HOH 43 170 82 HOH HOH A . C 2 HOH 44 171 83 HOH HOH A . C 2 HOH 45 172 85 HOH HOH A . C 2 HOH 46 173 86 HOH HOH A . C 2 HOH 47 174 87 HOH HOH A . C 2 HOH 48 175 89 HOH HOH A . C 2 HOH 49 176 90 HOH HOH A . C 2 HOH 50 177 91 HOH HOH A . C 2 HOH 51 178 94 HOH HOH A . C 2 HOH 52 179 97 HOH HOH A . C 2 HOH 53 180 98 HOH HOH A . C 2 HOH 54 181 99 HOH HOH A . C 2 HOH 55 182 100 HOH HOH A . C 2 HOH 56 183 101 HOH HOH A . C 2 HOH 57 184 102 HOH HOH A . C 2 HOH 58 185 103 HOH HOH A . C 2 HOH 59 186 108 HOH HOH A . D 2 HOH 1 128 1 HOH HOH B . D 2 HOH 2 129 2 HOH HOH B . D 2 HOH 3 130 3 HOH HOH B . D 2 HOH 4 131 5 HOH HOH B . D 2 HOH 5 132 6 HOH HOH B . D 2 HOH 6 133 12 HOH HOH B . D 2 HOH 7 134 16 HOH HOH B . D 2 HOH 8 135 17 HOH HOH B . D 2 HOH 9 136 18 HOH HOH B . D 2 HOH 10 137 21 HOH HOH B . D 2 HOH 11 138 24 HOH HOH B . D 2 HOH 12 139 25 HOH HOH B . D 2 HOH 13 140 28 HOH HOH B . D 2 HOH 14 141 30 HOH HOH B . D 2 HOH 15 142 31 HOH HOH B . D 2 HOH 16 143 33 HOH HOH B . D 2 HOH 17 144 35 HOH HOH B . D 2 HOH 18 145 36 HOH HOH B . D 2 HOH 19 146 37 HOH HOH B . D 2 HOH 20 147 42 HOH HOH B . D 2 HOH 21 148 44 HOH HOH B . D 2 HOH 22 149 46 HOH HOH B . D 2 HOH 23 150 51 HOH HOH B . D 2 HOH 24 151 53 HOH HOH B . D 2 HOH 25 152 54 HOH HOH B . D 2 HOH 26 153 55 HOH HOH B . D 2 HOH 27 154 57 HOH HOH B . D 2 HOH 28 155 58 HOH HOH B . D 2 HOH 29 156 60 HOH HOH B . D 2 HOH 30 157 65 HOH HOH B . D 2 HOH 31 158 67 HOH HOH B . D 2 HOH 32 159 68 HOH HOH B . D 2 HOH 33 160 69 HOH HOH B . D 2 HOH 34 161 71 HOH HOH B . D 2 HOH 35 162 75 HOH HOH B . D 2 HOH 36 163 76 HOH HOH B . D 2 HOH 37 164 77 HOH HOH B . D 2 HOH 38 165 78 HOH HOH B . D 2 HOH 39 166 81 HOH HOH B . D 2 HOH 40 167 84 HOH HOH B . D 2 HOH 41 168 88 HOH HOH B . D 2 HOH 42 169 92 HOH HOH B . D 2 HOH 43 170 93 HOH HOH B . D 2 HOH 44 171 95 HOH HOH B . D 2 HOH 45 172 96 HOH HOH B . D 2 HOH 46 173 104 HOH HOH B . D 2 HOH 47 174 105 HOH HOH B . D 2 HOH 48 175 106 HOH HOH B . D 2 HOH 49 176 107 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 80 A MSE 77 ? MET SELENOMETHIONINE 2 A MSE 103 A MSE 100 ? MET SELENOMETHIONINE 3 B MSE 80 B MSE 77 ? MET SELENOMETHIONINE 4 B MSE 103 B MSE 100 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-01-18 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.contact_author' 3 4 'Structure model' '_software.contact_author_email' 4 4 'Structure model' '_software.date' 5 4 'Structure model' '_software.language' 6 4 'Structure model' '_software.location' 7 4 'Structure model' '_software.name' 8 4 'Structure model' '_software.type' 9 4 'Structure model' '_software.version' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -3.1703 -12.1576 31.3438 0.0011 -0.0229 -0.0201 -0.0014 -0.0012 0.0203 0.3179 0.3721 1.7066 0.1405 0.2159 -0.0352 -0.0211 -0.0378 0.0590 -0.0190 0.0247 -0.0391 -0.0138 0.1170 0.1215 'X-RAY DIFFRACTION' 2 ? refined -16.6387 5.2826 13.2654 -0.0228 -0.0081 -0.0330 -0.0169 -0.0142 0.0158 0.4430 2.0456 0.6579 -0.4315 -0.0950 -0.0652 0.0013 0.0019 -0.0032 -0.0268 -0.0147 0.1025 -0.1193 0.0063 -0.0621 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 7 A 130 ALL A 4 A 127 'X-RAY DIFFRACTION' ? 2 2 B 7 B 130 ALL B 4 B 127 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 3 PDB_EXTRACT 1.401 'March 3, 2004' program H.Yang sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C/C++ ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 SHELXD . ? ? ? ? phasing ? ? ? 6 SOLVE . ? ? ? ? phasing ? ? ? 7 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 17 ? ? 75.41 -9.44 2 1 THR B 17 ? ? 75.12 -5.85 3 1 PRO B 29 ? ? -22.46 100.72 4 1 LYS B 126 ? ? 85.10 20.97 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A MSE 1 ? A MSE 4 5 1 Y 1 A ARG 2 ? A ARG 5 6 1 Y 1 A GLU 3 ? A GLU 6 7 1 Y 1 A GLY 46 ? A GLY 49 8 1 Y 1 A ASP 47 ? A ASP 50 9 1 Y 1 A LEU 48 ? A LEU 51 10 1 Y 1 A HIS 49 ? A HIS 52 11 1 Y 1 A ASN 50 ? A ASN 53 12 1 Y 1 A VAL 51 ? A VAL 54 13 1 Y 1 A LYS 52 ? A LYS 55 14 1 Y 1 A GLN 53 ? A GLN 56 15 1 Y 1 A ALA 54 ? A ALA 57 16 1 Y 1 A ASN 55 ? A ASN 58 17 1 Y 1 A VAL 56 ? A VAL 59 18 1 Y 1 A PRO 57 ? A PRO 60 19 1 Y 1 A PHE 58 ? A PHE 61 20 1 Y 1 A PHE 59 ? A PHE 62 21 1 Y 1 A HIS 60 ? A HIS 63 22 1 Y 1 B SER -2 ? B SER 1 23 1 Y 1 B ASN -1 ? B ASN 2 24 1 Y 1 B ALA 0 ? B ALA 3 25 1 Y 1 B MSE 1 ? B MSE 4 26 1 Y 1 B ARG 2 ? B ARG 5 27 1 Y 1 B GLU 3 ? B GLU 6 28 1 Y 1 B ASP 47 ? B ASP 50 29 1 Y 1 B LEU 48 ? B LEU 51 30 1 Y 1 B HIS 49 ? B HIS 52 31 1 Y 1 B ASN 50 ? B ASN 53 32 1 Y 1 B VAL 51 ? B VAL 54 33 1 Y 1 B LYS 52 ? B LYS 55 34 1 Y 1 B GLN 53 ? B GLN 56 35 1 Y 1 B ALA 54 ? B ALA 57 36 1 Y 1 B ASN 55 ? B ASN 58 37 1 Y 1 B VAL 56 ? B VAL 59 38 1 Y 1 B PRO 57 ? B PRO 60 39 1 Y 1 B PHE 58 ? B PHE 61 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #