data_1Y7N # _entry.id 1Y7N # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1Y7N pdb_00001y7n 10.2210/pdb1y7n/pdb RCSB RCSB031218 ? ? WWPDB D_1000031218 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1Y7N _pdbx_database_status.recvd_initial_deposition_date 2004-12-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Duquesne, A.E.' 1 'de Ruijter, M.' 2 'Brouwer, J.' 3 'Drijfhout, J.W.' 4 'Nabuurs, S.B.' 5 'Spronk, C.A.E.M.' 6 'Vuister, G.W.' 7 'Ubbink, M.' 8 'Canters, G.W.' 9 # _citation.id primary _citation.title ;Solution structure of the second PDZ domain of the neuronal adaptor X11alpha and its interaction with the C-terminal peptide of the human copper chaperone for superoxide dismutase ; _citation.journal_abbrev J.Biomol.Nmr _citation.journal_volume 32 _citation.page_first 209 _citation.page_last 218 _citation.year 2005 _citation.journal_id_ASTM JBNME9 _citation.country NE _citation.journal_id_ISSN 0925-2738 _citation.journal_id_CSD 0800 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16132821 _citation.pdbx_database_id_DOI 10.1007/s10858-005-7333-1 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Duquesne, A.E.' 1 ? primary 'de Ruijter, M.' 2 ? primary 'Brouwer, J.' 3 ? primary 'Drijfhout, J.W.' 4 ? primary 'Nabuurs, S.B.' 5 ? primary 'Spronk, C.A.E.M.' 6 ? primary 'Vuister, G.W.' 7 ? primary 'Ubbink, M.' 8 ? primary 'Canters, G.W.' 9 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Amyloid beta A4 precursor protein-binding family A member 1' _entity.formula_weight 9933.563 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'second PDZ domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Neuron-specific X11 protein, Neuronal Munc18-1-interacting protein 1, Mint-1, Adapter protein X11alpha' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;HHHHHLETMGNVTTVLIRRPDLRYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVG EIHMKTMPAA ; _entity_poly.pdbx_seq_one_letter_code_can ;HHHHHLETMGNVTTVLIRRPDLRYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVG EIHMKTMPAA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 LEU n 1 7 GLU n 1 8 THR n 1 9 MET n 1 10 GLY n 1 11 ASN n 1 12 VAL n 1 13 THR n 1 14 THR n 1 15 VAL n 1 16 LEU n 1 17 ILE n 1 18 ARG n 1 19 ARG n 1 20 PRO n 1 21 ASP n 1 22 LEU n 1 23 ARG n 1 24 TYR n 1 25 GLN n 1 26 LEU n 1 27 GLY n 1 28 PHE n 1 29 SER n 1 30 VAL n 1 31 GLN n 1 32 ASN n 1 33 GLY n 1 34 ILE n 1 35 ILE n 1 36 CYS n 1 37 SER n 1 38 LEU n 1 39 MET n 1 40 ARG n 1 41 GLY n 1 42 GLY n 1 43 ILE n 1 44 ALA n 1 45 GLU n 1 46 ARG n 1 47 GLY n 1 48 GLY n 1 49 VAL n 1 50 ARG n 1 51 VAL n 1 52 GLY n 1 53 HIS n 1 54 ARG n 1 55 ILE n 1 56 ILE n 1 57 GLU n 1 58 ILE n 1 59 ASN n 1 60 GLY n 1 61 GLN n 1 62 SER n 1 63 VAL n 1 64 VAL n 1 65 ALA n 1 66 THR n 1 67 PRO n 1 68 HIS n 1 69 GLU n 1 70 LYS n 1 71 ILE n 1 72 VAL n 1 73 HIS n 1 74 ILE n 1 75 LEU n 1 76 SER n 1 77 ASN n 1 78 ALA n 1 79 VAL n 1 80 GLY n 1 81 GLU n 1 82 ILE n 1 83 HIS n 1 84 MET n 1 85 LYS n 1 86 THR n 1 87 MET n 1 88 PRO n 1 89 ALA n 1 90 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene APBA1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue Brain _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3) *RP' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET3H _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code APBA1_HUMAN _struct_ref.pdbx_db_accession Q02410 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code VTTVLIRRPDLRYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPAA _struct_ref.pdbx_align_begin 745 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1Y7N _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 12 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 90 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q02410 _struct_ref_seq.db_align_beg 745 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 823 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 12 _struct_ref_seq.pdbx_auth_seq_align_end 90 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1Y7N HIS A 1 ? UNP Q02410 ? ? 'expression tag' 1 1 1 1Y7N HIS A 2 ? UNP Q02410 ? ? 'expression tag' 2 2 1 1Y7N HIS A 3 ? UNP Q02410 ? ? 'expression tag' 3 3 1 1Y7N HIS A 4 ? UNP Q02410 ? ? 'expression tag' 4 4 1 1Y7N HIS A 5 ? UNP Q02410 ? ? 'expression tag' 5 5 1 1Y7N LEU A 6 ? UNP Q02410 ? ? 'expression tag' 6 6 1 1Y7N GLU A 7 ? UNP Q02410 ? ? 'expression tag' 7 7 1 1Y7N THR A 8 ? UNP Q02410 ? ? 'expression tag' 8 8 1 1Y7N MET A 9 ? UNP Q02410 ? ? 'expression tag' 9 9 1 1Y7N GLY A 10 ? UNP Q02410 ? ? 'expression tag' 10 10 1 1Y7N ASN A 11 ? UNP Q02410 ? ? 'expression tag' 11 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_15N-separated_NOESY 2 1 1 3D_13C-separated_NOESY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 290 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.7 _pdbx_nmr_exptl_sample_conditions.ionic_strength 10mM _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.2mM PDZ2a U-15N,13C; 10mM sodium phosphate buffer; pH 6.7; 95% H2O; 5% D2O' _pdbx_nmr_sample_details.solvent_system '95% H2O/5% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.field_strength 800 # _pdbx_nmr_refine.entry_id 1Y7N _pdbx_nmr_refine.method 'simulated annealing, molecular dynamics simulation, torsion angle dynamics, distance and dihedral angle restraints' _pdbx_nmr_refine.details ;The final structure calculations with CYANA were started from 100 conformers with random torsion angle values. Simulated annealing with 10,000 time steps per conformer was done using the DYANA torsion angle dynamics algorithm. Using the FormatConverter, developed as part of the Collaborative Computing Project for the NMR Community (CCPN), the distance and dihedral angle restraints were converted to the X-PLOR restraint format. Subsequently the 100 generated structures were refined using a sh rt restrained molecular dynamics simulation in explicit solvent in the program XPLOR-NIH. Of these, the 20 lowest energy structures were selected to form the final ensemble. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1Y7N _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1Y7N _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal NMRPipe '2002 release' processing 'F. Delaglio, S. Grzesiek, G. W. Vuister, G. Zhu, J. Pfeifer and A. Bax' 1 CARA 1.1.8 'data analysis' 'R.L.J. Keller' 2 CYANA 1.0 'structure solution' 'P. Guntert' 3 X-PLOR 2.9.6 refinement ? 4 VNMR ? collection ? 5 # _exptl.entry_id 1Y7N _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1Y7N _struct.title 'Solution structure of the second PDZ domain of the human neuronal adaptor X11alpha' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1Y7N _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text 'copper chaperone for superoxide dismutase, neuronal adaptor, PROTEIN TRANSPORT' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 42 ? GLY A 48 ? GLY A 42 GLY A 48 1 ? 7 HELX_P HELX_P2 2 PRO A 67 ? ALA A 78 ? PRO A 67 ALA A 78 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 13 ? ARG A 19 ? THR A 13 ARG A 19 A 2 GLY A 80 ? MET A 87 ? GLY A 80 MET A 87 A 3 ARG A 54 ? ILE A 58 ? ARG A 54 ILE A 58 A 4 GLN A 61 ? SER A 62 ? GLN A 61 SER A 62 B 1 PHE A 28 ? GLN A 31 ? PHE A 28 GLN A 31 B 2 ILE A 34 ? LEU A 38 ? ILE A 34 LEU A 38 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 13 ? N THR A 13 O THR A 86 ? O THR A 86 A 2 3 O LYS A 85 ? O LYS A 85 N ILE A 56 ? N ILE A 56 A 3 4 N ILE A 58 ? N ILE A 58 O GLN A 61 ? O GLN A 61 B 1 2 N SER A 29 ? N SER A 29 O CYS A 36 ? O CYS A 36 # _database_PDB_matrix.entry_id 1Y7N _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1Y7N _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 1 ? ? ? A . n A 1 2 HIS 2 2 ? ? ? A . n A 1 3 HIS 3 3 ? ? ? A . n A 1 4 HIS 4 4 ? ? ? A . n A 1 5 HIS 5 5 ? ? ? A . n A 1 6 LEU 6 6 ? ? ? A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 MET 9 9 9 MET MET A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 PRO 20 20 20 PRO PRO A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 TYR 24 24 24 TYR TYR A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 ASN 32 32 32 ASN ASN A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 CYS 36 36 36 CYS CYS A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 MET 39 39 39 MET MET A . n A 1 40 ARG 40 40 40 ARG ARG A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 ARG 46 46 46 ARG ARG A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 ARG 50 50 50 ARG ARG A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 HIS 53 53 53 HIS HIS A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 THR 66 66 66 THR THR A . n A 1 67 PRO 67 67 67 PRO PRO A . n A 1 68 HIS 68 68 68 HIS HIS A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ILE 71 71 71 ILE ILE A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 HIS 73 73 73 HIS HIS A . n A 1 74 ILE 74 74 74 ILE ILE A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 SER 76 76 76 SER SER A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 VAL 79 79 79 VAL VAL A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 HIS 83 83 83 HIS HIS A . n A 1 84 MET 84 84 84 MET MET A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 MET 87 87 87 MET MET A . n A 1 88 PRO 88 88 88 PRO PRO A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 ALA 90 90 90 ALA ALA A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-22 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_assembly 3 4 'Structure model' pdbx_struct_oper_list 4 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 12 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 69 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 HZ2 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 LYS _pdbx_validate_close_contact.auth_seq_id_2 70 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.60 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 8 ? ? 61.22 77.13 2 1 PRO A 88 ? ? -70.27 28.71 3 2 PRO A 88 ? ? -74.71 31.31 4 3 ASP A 21 ? ? -171.71 -175.46 5 3 PRO A 88 ? ? -74.30 35.64 6 4 PRO A 88 ? ? -72.74 31.49 7 5 MET A 9 ? ? -173.95 -46.24 8 5 PRO A 88 ? ? -68.20 32.42 9 6 GLN A 25 ? ? -121.63 -168.42 10 6 PRO A 88 ? ? -71.04 29.50 11 6 ALA A 89 ? ? 71.00 -2.36 12 7 ASN A 32 ? ? 59.86 12.80 13 7 PRO A 88 ? ? -75.98 29.83 14 8 THR A 8 ? ? 83.29 93.69 15 8 ASN A 32 ? ? 64.20 -1.14 16 8 PRO A 88 ? ? -73.77 27.52 17 9 ASN A 11 ? ? 63.22 88.26 18 9 PRO A 88 ? ? -74.84 30.27 19 10 GLN A 25 ? ? 57.05 -164.46 20 10 PRO A 88 ? ? -69.71 26.26 21 10 ALA A 89 ? ? 74.86 -1.27 22 11 GLU A 81 ? ? -59.11 108.78 23 12 THR A 8 ? ? 64.93 140.11 24 12 ASN A 11 ? ? 62.19 92.09 25 12 ASP A 21 ? ? -176.73 -176.89 26 12 PRO A 88 ? ? -71.29 29.58 27 13 ASP A 21 ? ? -173.10 -170.49 28 13 PRO A 88 ? ? -70.79 38.76 29 14 ASN A 32 ? ? 59.39 11.97 30 14 PRO A 88 ? ? -71.42 24.33 31 15 GLN A 25 ? ? 54.09 -153.58 32 15 PRO A 88 ? ? -75.51 29.67 33 16 ASN A 11 ? ? 68.91 86.79 34 16 PRO A 88 ? ? -70.69 26.64 35 17 ASN A 59 ? ? 73.38 -21.18 36 17 PRO A 88 ? ? -72.94 22.33 37 18 GLN A 25 ? ? -97.07 -157.27 38 18 PRO A 88 ? ? -72.10 24.91 39 19 ASN A 59 ? ? 69.43 -2.72 40 19 PRO A 88 ? ? -78.33 29.68 41 20 ASN A 11 ? ? 63.48 89.88 42 20 ASN A 59 ? ? 70.84 -18.66 43 20 PRO A 88 ? ? -74.48 30.05 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 19 ? ? 0.078 'SIDE CHAIN' 2 3 ARG A 18 ? ? 0.091 'SIDE CHAIN' 3 5 ARG A 19 ? ? 0.073 'SIDE CHAIN' 4 5 ARG A 54 ? ? 0.077 'SIDE CHAIN' 5 8 ARG A 19 ? ? 0.106 'SIDE CHAIN' 6 9 ARG A 50 ? ? 0.083 'SIDE CHAIN' 7 10 ARG A 23 ? ? 0.128 'SIDE CHAIN' 8 11 ARG A 19 ? ? 0.094 'SIDE CHAIN' 9 12 ARG A 40 ? ? 0.084 'SIDE CHAIN' 10 13 ARG A 50 ? ? 0.083 'SIDE CHAIN' 11 13 ARG A 54 ? ? 0.111 'SIDE CHAIN' 12 14 ARG A 23 ? ? 0.079 'SIDE CHAIN' 13 14 ARG A 46 ? ? 0.092 'SIDE CHAIN' 14 15 ARG A 54 ? ? 0.083 'SIDE CHAIN' 15 16 ARG A 18 ? ? 0.115 'SIDE CHAIN' 16 17 ARG A 19 ? ? 0.074 'SIDE CHAIN' 17 18 ARG A 18 ? ? 0.084 'SIDE CHAIN' 18 19 ARG A 18 ? ? 0.078 'SIDE CHAIN' 19 19 ARG A 46 ? ? 0.102 'SIDE CHAIN' 20 20 ARG A 19 ? ? 0.088 'SIDE CHAIN' 21 20 ARG A 50 ? ? 0.089 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 1 ? A HIS 1 2 1 Y 1 A HIS 2 ? A HIS 2 3 1 Y 1 A HIS 3 ? A HIS 3 4 1 Y 1 A HIS 4 ? A HIS 4 5 1 Y 1 A HIS 5 ? A HIS 5 6 1 Y 1 A LEU 6 ? A LEU 6 7 2 Y 1 A HIS 1 ? A HIS 1 8 2 Y 1 A HIS 2 ? A HIS 2 9 2 Y 1 A HIS 3 ? A HIS 3 10 2 Y 1 A HIS 4 ? A HIS 4 11 2 Y 1 A HIS 5 ? A HIS 5 12 2 Y 1 A LEU 6 ? A LEU 6 13 3 Y 1 A HIS 1 ? A HIS 1 14 3 Y 1 A HIS 2 ? A HIS 2 15 3 Y 1 A HIS 3 ? A HIS 3 16 3 Y 1 A HIS 4 ? A HIS 4 17 3 Y 1 A HIS 5 ? A HIS 5 18 3 Y 1 A LEU 6 ? A LEU 6 19 4 Y 1 A HIS 1 ? A HIS 1 20 4 Y 1 A HIS 2 ? A HIS 2 21 4 Y 1 A HIS 3 ? A HIS 3 22 4 Y 1 A HIS 4 ? A HIS 4 23 4 Y 1 A HIS 5 ? A HIS 5 24 4 Y 1 A LEU 6 ? A LEU 6 25 5 Y 1 A HIS 1 ? A HIS 1 26 5 Y 1 A HIS 2 ? A HIS 2 27 5 Y 1 A HIS 3 ? A HIS 3 28 5 Y 1 A HIS 4 ? A HIS 4 29 5 Y 1 A HIS 5 ? A HIS 5 30 5 Y 1 A LEU 6 ? A LEU 6 31 6 Y 1 A HIS 1 ? A HIS 1 32 6 Y 1 A HIS 2 ? A HIS 2 33 6 Y 1 A HIS 3 ? A HIS 3 34 6 Y 1 A HIS 4 ? A HIS 4 35 6 Y 1 A HIS 5 ? A HIS 5 36 6 Y 1 A LEU 6 ? A LEU 6 37 7 Y 1 A HIS 1 ? A HIS 1 38 7 Y 1 A HIS 2 ? A HIS 2 39 7 Y 1 A HIS 3 ? A HIS 3 40 7 Y 1 A HIS 4 ? A HIS 4 41 7 Y 1 A HIS 5 ? A HIS 5 42 7 Y 1 A LEU 6 ? A LEU 6 43 8 Y 1 A HIS 1 ? A HIS 1 44 8 Y 1 A HIS 2 ? A HIS 2 45 8 Y 1 A HIS 3 ? A HIS 3 46 8 Y 1 A HIS 4 ? A HIS 4 47 8 Y 1 A HIS 5 ? A HIS 5 48 8 Y 1 A LEU 6 ? A LEU 6 49 9 Y 1 A HIS 1 ? A HIS 1 50 9 Y 1 A HIS 2 ? A HIS 2 51 9 Y 1 A HIS 3 ? A HIS 3 52 9 Y 1 A HIS 4 ? A HIS 4 53 9 Y 1 A HIS 5 ? A HIS 5 54 9 Y 1 A LEU 6 ? A LEU 6 55 10 Y 1 A HIS 1 ? A HIS 1 56 10 Y 1 A HIS 2 ? A HIS 2 57 10 Y 1 A HIS 3 ? A HIS 3 58 10 Y 1 A HIS 4 ? A HIS 4 59 10 Y 1 A HIS 5 ? A HIS 5 60 10 Y 1 A LEU 6 ? A LEU 6 61 11 Y 1 A HIS 1 ? A HIS 1 62 11 Y 1 A HIS 2 ? A HIS 2 63 11 Y 1 A HIS 3 ? A HIS 3 64 11 Y 1 A HIS 4 ? A HIS 4 65 11 Y 1 A HIS 5 ? A HIS 5 66 11 Y 1 A LEU 6 ? A LEU 6 67 12 Y 1 A HIS 1 ? A HIS 1 68 12 Y 1 A HIS 2 ? A HIS 2 69 12 Y 1 A HIS 3 ? A HIS 3 70 12 Y 1 A HIS 4 ? A HIS 4 71 12 Y 1 A HIS 5 ? A HIS 5 72 12 Y 1 A LEU 6 ? A LEU 6 73 13 Y 1 A HIS 1 ? A HIS 1 74 13 Y 1 A HIS 2 ? A HIS 2 75 13 Y 1 A HIS 3 ? A HIS 3 76 13 Y 1 A HIS 4 ? A HIS 4 77 13 Y 1 A HIS 5 ? A HIS 5 78 13 Y 1 A LEU 6 ? A LEU 6 79 14 Y 1 A HIS 1 ? A HIS 1 80 14 Y 1 A HIS 2 ? A HIS 2 81 14 Y 1 A HIS 3 ? A HIS 3 82 14 Y 1 A HIS 4 ? A HIS 4 83 14 Y 1 A HIS 5 ? A HIS 5 84 14 Y 1 A LEU 6 ? A LEU 6 85 15 Y 1 A HIS 1 ? A HIS 1 86 15 Y 1 A HIS 2 ? A HIS 2 87 15 Y 1 A HIS 3 ? A HIS 3 88 15 Y 1 A HIS 4 ? A HIS 4 89 15 Y 1 A HIS 5 ? A HIS 5 90 15 Y 1 A LEU 6 ? A LEU 6 91 16 Y 1 A HIS 1 ? A HIS 1 92 16 Y 1 A HIS 2 ? A HIS 2 93 16 Y 1 A HIS 3 ? A HIS 3 94 16 Y 1 A HIS 4 ? A HIS 4 95 16 Y 1 A HIS 5 ? A HIS 5 96 16 Y 1 A LEU 6 ? A LEU 6 97 17 Y 1 A HIS 1 ? A HIS 1 98 17 Y 1 A HIS 2 ? A HIS 2 99 17 Y 1 A HIS 3 ? A HIS 3 100 17 Y 1 A HIS 4 ? A HIS 4 101 17 Y 1 A HIS 5 ? A HIS 5 102 17 Y 1 A LEU 6 ? A LEU 6 103 18 Y 1 A HIS 1 ? A HIS 1 104 18 Y 1 A HIS 2 ? A HIS 2 105 18 Y 1 A HIS 3 ? A HIS 3 106 18 Y 1 A HIS 4 ? A HIS 4 107 18 Y 1 A HIS 5 ? A HIS 5 108 18 Y 1 A LEU 6 ? A LEU 6 109 19 Y 1 A HIS 1 ? A HIS 1 110 19 Y 1 A HIS 2 ? A HIS 2 111 19 Y 1 A HIS 3 ? A HIS 3 112 19 Y 1 A HIS 4 ? A HIS 4 113 19 Y 1 A HIS 5 ? A HIS 5 114 19 Y 1 A LEU 6 ? A LEU 6 115 20 Y 1 A HIS 1 ? A HIS 1 116 20 Y 1 A HIS 2 ? A HIS 2 117 20 Y 1 A HIS 3 ? A HIS 3 118 20 Y 1 A HIS 4 ? A HIS 4 119 20 Y 1 A HIS 5 ? A HIS 5 120 20 Y 1 A LEU 6 ? A LEU 6 #