HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 09-DEC-04 1Y7R TITLE 1.7 A CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION SA2161 FROM TITLE 2 METICILLIN-RESISTANT STAPHYLOCOCCUS AUREUS, PROBABLE TITLE 3 ACETYLTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN SA2161; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMGSC7 KEYWDS STRUCTURAL GENOMICS, HYPOTHETICAL PROTEIN, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, PSI, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.QIU,R.ZHANG,F.COLLART,D.HOLZLE,A.JOACHIMIAK,A.KOSSIAKOFF,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 20-OCT-21 1Y7R 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 1Y7R 1 VERSN REVDAT 3 16-JUN-09 1Y7R 1 REMARK REVDAT 2 24-FEB-09 1Y7R 1 VERSN REVDAT 1 25-JAN-05 1Y7R 0 JRNL AUTH Y.QIU,R.ZHANG,F.COLLART,D.HOLZLE,A.JOACHIMIAK,A.KOSSIAKOFF, JRNL AUTH 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) JRNL TITL 1.7A CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN SA2161 FROM JRNL TITL 2 METICILLIN-RESISTANT STAPHYLOCOCCUS AUREUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 24432 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1340 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1776 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.1730 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.2590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2070 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 246 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.34000 REMARK 3 B22 (A**2) : -0.13000 REMARK 3 B33 (A**2) : 0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.118 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.419 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2152 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2914 ; 1.625 ; 2.002 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 264 ; 7.136 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 82 ;29.261 ;24.146 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 376 ;14.635 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;29.713 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 324 ; 0.141 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1556 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1102 ; 0.238 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1521 ; 0.348 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 170 ; 0.209 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 108 ; 0.299 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 48 ; 0.317 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1347 ; 1.635 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2138 ; 1.676 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 910 ; 3.260 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 776 ; 4.383 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 6 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 509 B 632 REMARK 3 RESIDUE RANGE : A 507 A 628 REMARK 3 RESIDUE RANGE : B 501 B 508 REMARK 3 RESIDUE RANGE : A 503 A 506 REMARK 3 RESIDUE RANGE : B 1 B 133 REMARK 3 RESIDUE RANGE : A 1 A 133 REMARK 3 ORIGIN FOR THE GROUP (A): 1.4235 15.5235 54.3812 REMARK 3 T TENSOR REMARK 3 T11: -0.0090 T22: -0.0175 REMARK 3 T33: -0.0094 T12: -0.0001 REMARK 3 T13: 0.0002 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.2599 L22: 0.1049 REMARK 3 L33: 0.3273 L12: -0.0060 REMARK 3 L13: -0.1463 L23: 0.0048 REMARK 3 S TENSOR REMARK 3 S11: 0.0058 S12: 0.0035 S13: -0.0029 REMARK 3 S21: -0.0069 S22: -0.0069 S23: 0.0072 REMARK 3 S31: -0.0131 S32: -0.0054 S33: 0.0011 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1Y7R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1000031222. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97948, 0.97959 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25772 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MONO-AMMONIUM DIHYDROGEN PHOSPHATE, PH REMARK 280 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.08550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 553 O HOH B 614 1.85 REMARK 500 O HOH B 524 O HOH B 614 1.91 REMARK 500 O HOH A 550 O HOH A 589 1.96 REMARK 500 N MSE B 1 O HOH B 524 2.09 REMARK 500 O HOH B 525 O HOH B 595 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 546 O HOH B 614 2547 1.84 REMARK 500 O HOH A 546 O HOH B 602 2547 1.90 REMARK 500 O HOH B 588 O HOH B 609 2657 1.93 REMARK 500 O HOH B 604 O HOH B 610 2547 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 18 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 47 -115.89 54.31 REMARK 500 GLN A 78 25.20 -147.64 REMARK 500 ALA A 79 -4.70 101.42 REMARK 500 SER A 99 -7.68 88.85 REMARK 500 PRO A 109 -36.25 24.20 REMARK 500 LYS B 47 -114.70 55.65 REMARK 500 ALA B 79 -3.06 98.30 REMARK 500 SER B 99 -12.42 92.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 108 PRO A 109 -122.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 508 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC23655 RELATED DB: TARGETDB DBREF 1Y7R A 1 133 UNP Q99RQ6 Q99RQ6_STAAM 1 133 DBREF 1Y7R B 1 133 UNP Q99RQ6 Q99RQ6_STAAM 1 133 SEQADV 1Y7R LEU A 72 UNP Q99RQ6 SER 72 ENGINEERED MUTATION SEQADV 1Y7R ALA A 79 UNP Q99RQ6 ASP 79 ENGINEERED MUTATION SEQADV 1Y7R VAL A 100 UNP Q99RQ6 ALA 100 ENGINEERED MUTATION SEQADV 1Y7R VAL A 115 UNP Q99RQ6 ALA 115 ENGINEERED MUTATION SEQADV 1Y7R LEU B 72 UNP Q99RQ6 SER 72 ENGINEERED MUTATION SEQADV 1Y7R ALA B 79 UNP Q99RQ6 ASP 79 ENGINEERED MUTATION SEQADV 1Y7R VAL B 100 UNP Q99RQ6 ALA 100 ENGINEERED MUTATION SEQADV 1Y7R VAL B 115 UNP Q99RQ6 ALA 115 ENGINEERED MUTATION SEQRES 1 A 133 MSE VAL LYS VAL THR TYR ASP ILE PRO THR CYS GLU ASP SEQRES 2 A 133 TYR CYS ALA LEU ARG ILE ASN ALA GLY MSE SER PRO LYS SEQRES 3 A 133 THR ARG GLU ALA ALA GLU LYS GLY LEU PRO ASN ALA LEU SEQRES 4 A 133 PHE THR VAL THR LEU TYR ASP LYS ASP ARG LEU ILE GLY SEQRES 5 A 133 MSE GLY ARG VAL ILE GLY ASP GLY GLY THR VAL PHE GLN SEQRES 6 A 133 ILE VAL ASP ILE ALA VAL LEU LYS SER TYR GLN GLY GLN SEQRES 7 A 133 ALA TYR GLY SER LEU ILE MSE GLU HIS ILE MSE LYS TYR SEQRES 8 A 133 ILE LYS ASN VAL SER VAL GLU SER VAL TYR VAL SER LEU SEQRES 9 A 133 ILE ALA ASP TYR PRO ALA ASP LYS LEU TYR VAL LYS PHE SEQRES 10 A 133 GLY PHE MSE PRO THR GLU PRO ASP SER GLY GLY MSE TYR SEQRES 11 A 133 ILE LYS TYR SEQRES 1 B 133 MSE VAL LYS VAL THR TYR ASP ILE PRO THR CYS GLU ASP SEQRES 2 B 133 TYR CYS ALA LEU ARG ILE ASN ALA GLY MSE SER PRO LYS SEQRES 3 B 133 THR ARG GLU ALA ALA GLU LYS GLY LEU PRO ASN ALA LEU SEQRES 4 B 133 PHE THR VAL THR LEU TYR ASP LYS ASP ARG LEU ILE GLY SEQRES 5 B 133 MSE GLY ARG VAL ILE GLY ASP GLY GLY THR VAL PHE GLN SEQRES 6 B 133 ILE VAL ASP ILE ALA VAL LEU LYS SER TYR GLN GLY GLN SEQRES 7 B 133 ALA TYR GLY SER LEU ILE MSE GLU HIS ILE MSE LYS TYR SEQRES 8 B 133 ILE LYS ASN VAL SER VAL GLU SER VAL TYR VAL SER LEU SEQRES 9 B 133 ILE ALA ASP TYR PRO ALA ASP LYS LEU TYR VAL LYS PHE SEQRES 10 B 133 GLY PHE MSE PRO THR GLU PRO ASP SER GLY GLY MSE TYR SEQRES 11 B 133 ILE LYS TYR MODRES 1Y7R MSE A 1 MET SELENOMETHIONINE MODRES 1Y7R MSE A 23 MET SELENOMETHIONINE MODRES 1Y7R MSE A 53 MET SELENOMETHIONINE MODRES 1Y7R MSE A 85 MET SELENOMETHIONINE MODRES 1Y7R MSE A 89 MET SELENOMETHIONINE MODRES 1Y7R MSE A 120 MET SELENOMETHIONINE MODRES 1Y7R MSE A 129 MET SELENOMETHIONINE MODRES 1Y7R MSE B 1 MET SELENOMETHIONINE MODRES 1Y7R MSE B 23 MET SELENOMETHIONINE MODRES 1Y7R MSE B 53 MET SELENOMETHIONINE MODRES 1Y7R MSE B 85 MET SELENOMETHIONINE MODRES 1Y7R MSE B 89 MET SELENOMETHIONINE MODRES 1Y7R MSE B 120 MET SELENOMETHIONINE MODRES 1Y7R MSE B 129 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 23 8 HET MSE A 53 8 HET MSE A 85 8 HET MSE A 89 8 HET MSE A 120 8 HET MSE A 129 8 HET MSE B 1 8 HET MSE B 23 8 HET MSE B 53 8 HET MSE B 85 8 HET MSE B 89 8 HET MSE B 120 8 HET MSE B 129 8 HET PO4 A 503 5 HET PO4 A 504 5 HET PO4 A 505 5 HET PO4 A 506 5 HET PO4 B 501 5 HET PO4 B 502 5 HET PO4 B 507 5 HET PO4 B 508 5 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 PO4 8(O4 P 3-) FORMUL 11 HOH *246(H2 O) HELIX 1 1 THR A 10 ALA A 21 1 12 HELIX 2 2 THR A 27 LEU A 35 1 9 HELIX 3 3 PRO A 36 ALA A 38 5 3 HELIX 4 4 LYS A 73 GLN A 76 5 4 HELIX 5 5 ALA A 79 SER A 96 1 18 HELIX 6 6 PRO A 109 LYS A 116 1 8 HELIX 7 7 THR B 10 ALA B 21 1 12 HELIX 8 8 THR B 27 LEU B 35 1 9 HELIX 9 9 PRO B 36 ALA B 38 5 3 HELIX 10 10 LYS B 73 GLN B 76 5 4 HELIX 11 11 ALA B 79 SER B 96 1 18 HELIX 12 12 ALA B 110 PHE B 117 1 8 SHEET 1 A 7 LYS A 3 THR A 5 0 SHEET 2 A 7 PHE A 40 ASP A 46 -1 O THR A 43 N THR A 5 SHEET 3 A 7 ARG A 49 GLY A 58 -1 O ILE A 51 N LEU A 44 SHEET 4 A 7 VAL A 63 VAL A 71 -1 O GLN A 65 N ILE A 57 SHEET 5 A 7 TYR A 101 ASP A 107 1 O SER A 103 N PHE A 64 SHEET 6 A 7 SER B 126 LYS B 132 -1 O GLY B 127 N ALA A 106 SHEET 7 A 7 MSE A 120 PRO A 121 -1 N MSE A 120 O TYR B 130 SHEET 1 B 7 LYS B 3 THR B 5 0 SHEET 2 B 7 PHE B 40 ASP B 46 -1 O TYR B 45 N LYS B 3 SHEET 3 B 7 ARG B 49 GLY B 58 -1 O GLY B 52 N LEU B 44 SHEET 4 B 7 VAL B 63 VAL B 71 -1 O VAL B 67 N ARG B 55 SHEET 5 B 7 TYR B 101 ASP B 107 1 O SER B 103 N ILE B 66 SHEET 6 B 7 SER A 126 LYS A 132 -1 N GLY A 127 O ALA B 106 SHEET 7 B 7 MSE B 120 PRO B 121 -1 O MSE B 120 N TYR A 130 LINK C MSE A 1 N VAL A 2 1555 1555 1.32 LINK C GLY A 22 N MSE A 23 1555 1555 1.34 LINK C MSE A 23 N SER A 24 1555 1555 1.33 LINK C GLY A 52 N MSE A 53 1555 1555 1.33 LINK C MSE A 53 N GLY A 54 1555 1555 1.31 LINK C ILE A 84 N MSE A 85 1555 1555 1.32 LINK C MSE A 85 N GLU A 86 1555 1555 1.34 LINK C ILE A 88 N MSE A 89 1555 1555 1.33 LINK C MSE A 89 N LYS A 90 1555 1555 1.33 LINK C PHE A 119 N MSE A 120 1555 1555 1.33 LINK C MSE A 120 N PRO A 121 1555 1555 1.33 LINK C GLY A 128 N MSE A 129 1555 1555 1.34 LINK C MSE A 129 N TYR A 130 1555 1555 1.33 LINK C MSE B 1 N VAL B 2 1555 1555 1.32 LINK C GLY B 22 N MSE B 23 1555 1555 1.33 LINK C MSE B 23 N SER B 24 1555 1555 1.33 LINK C GLY B 52 N MSE B 53 1555 1555 1.32 LINK C MSE B 53 N GLY B 54 1555 1555 1.33 LINK C ILE B 84 N MSE B 85 1555 1555 1.33 LINK C MSE B 85 N GLU B 86 1555 1555 1.33 LINK C ILE B 88 N MSE B 89 1555 1555 1.33 LINK C MSE B 89 N LYS B 90 1555 1555 1.33 LINK C PHE B 119 N MSE B 120 1555 1555 1.34 LINK C MSE B 120 N PRO B 121 1555 1555 1.33 LINK C GLY B 128 N MSE B 129 1555 1555 1.33 LINK C MSE B 129 N TYR B 130 1555 1555 1.32 CISPEP 1 GLU A 123 PRO A 124 0 3.76 CISPEP 2 GLU B 123 PRO B 124 0 1.86 SITE 1 AC1 10 VAL B 71 GLN B 76 GLY B 77 TYR B 80 SITE 2 AC1 10 GLY B 81 PO4 B 502 HOH B 513 HOH B 563 SITE 3 AC1 10 HOH B 569 HOH B 586 SITE 1 AC2 8 GLN B 78 ALA B 79 TYR B 80 GLY B 81 SITE 2 AC2 8 SER B 82 LYS B 116 PO4 B 501 HOH B 620 SITE 1 AC3 7 GLN A 78 ALA A 79 TYR A 80 GLY A 81 SITE 2 AC3 7 SER A 82 LEU A 113 PO4 A 504 SITE 1 AC4 8 VAL A 71 GLN A 76 GLY A 77 GLY A 81 SITE 2 AC4 8 PO4 A 503 HOH A 513 HOH A 539 HOH A 586 SITE 1 AC5 1 PO4 A 506 SITE 1 AC6 5 GLU A 12 ALA A 16 PO4 A 505 HOH A 561 SITE 2 AC6 5 HOH A 595 SITE 1 AC7 1 PO4 B 508 SITE 1 AC8 1 PO4 B 507 CRYST1 38.168 44.171 71.408 90.00 100.73 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026200 0.000000 0.004963 0.00000 SCALE2 0.000000 0.022639 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014253 0.00000 HETATM 1 N MSE A 1 23.853 10.012 31.160 1.00 23.70 N HETATM 2 CA MSE A 1 23.026 9.483 32.282 1.00 25.23 C HETATM 3 C MSE A 1 22.942 10.490 33.410 1.00 21.25 C HETATM 4 O MSE A 1 23.901 11.186 33.729 1.00 19.65 O HETATM 5 CB MSE A 1 23.588 8.171 32.814 1.00 24.56 C HETATM 6 CG MSE A 1 23.304 7.034 31.887 1.00 27.52 C HETATM 7 SE MSE A 1 24.420 5.492 32.216 1.00 37.74 SE HETATM 8 CE MSE A 1 23.567 4.859 33.861 1.00 32.94 C