data_1Y81 # _entry.id 1Y81 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1Y81 RCSB RCSB031232 WWPDB D_1000031232 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id Pfu-723267-001 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 1Y81 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2004-12-10 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhao, M.' 1 'Chang, J.' 2 'Habel, J.' 3 'Xu, H.' 4 'Chen, L.' 5 'Lee, D.' 6 'Nguyen, D.' 7 'Chang, S.-H.' 8 'Horanyi, P.' 9 'Florence, Q.' 10 'Tempel, W.' 11 'Zhou, W.' 12 'Lin, D.' 13 'Zhang, H.' 14 'Praissman, J.' 15 'Jenney Jr., F.E.' 16 'Adams, M.W.W.' 17 'Liu, Z.-J.' 18 'Rose, J.P.' 19 'Wang, B.-C.' 20 'Southeast Collaboratory for Structural Genomics (SECSG)' 21 # _citation.id primary _citation.title 'Conserved hypothetical protein Pfu-723267-001 from Pyrococcus furiosus' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Zhao, M.' 1 primary 'Chang, J.' 2 primary 'Habel, J.' 3 primary 'Xu, H.' 4 primary 'Chen, L.' 5 primary 'Lee, D.' 6 primary 'Nguyen, D.' 7 primary 'Chang, S.-H.' 8 primary 'Horanyi, P.' 9 primary 'Florence, Q.' 10 primary 'Tempel, W.' 11 primary 'Zhou, W.' 12 primary 'Lin, D.' 13 primary 'Zhang, H.' 14 primary 'Praissman, J.' 15 primary 'Jenney Jr., F.E.' 16 primary 'Adams, M.W.W.' 17 primary 'Liu, Z.-J.' 18 primary 'Rose, J.P.' 19 primary 'Wang, B.-C.' 20 # _cell.entry_id 1Y81 _cell.length_a 79.146 _cell.length_b 79.146 _cell.length_c 36.402 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1Y81 _symmetry.space_group_name_H-M 'P 62' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'conserved hypothetical protein' 15661.961 1 ? ? ? ? 2 non-polymer syn 'THIOCYANATE ION' 58.082 1 ? ? ? ? 3 non-polymer syn 'COENZYME A' 767.534 1 ? ? ? ? 4 non-polymer syn 'UNKNOWN ATOM OR ION' ? 8 ? ? ? ? 5 water nat water 18.015 23 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;AHHHHHHGSNSKEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVPPK VGLQVAKEAVEAGFKKLWFQPGAESEEIRRFLEKAGVEYSFGRCI(MSE)VETSNKKIFLEV ; _entity_poly.pdbx_seq_one_letter_code_can ;AHHHHHHGSNSKEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVPPK VGLQVAKEAVEAGFKKLWFQPGAESEEIRRFLEKAGVEYSFGRCIMVETSNKKIFLEV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier Pfu-723267-001 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 GLY n 1 9 SER n 1 10 ASN n 1 11 SER n 1 12 LYS n 1 13 GLU n 1 14 PHE n 1 15 ARG n 1 16 LYS n 1 17 ILE n 1 18 ALA n 1 19 LEU n 1 20 VAL n 1 21 GLY n 1 22 ALA n 1 23 SER n 1 24 LYS n 1 25 ASN n 1 26 PRO n 1 27 ALA n 1 28 LYS n 1 29 TYR n 1 30 GLY n 1 31 ASN n 1 32 ILE n 1 33 ILE n 1 34 LEU n 1 35 LYS n 1 36 ASP n 1 37 LEU n 1 38 LEU n 1 39 SER n 1 40 LYS n 1 41 GLY n 1 42 PHE n 1 43 GLU n 1 44 VAL n 1 45 LEU n 1 46 PRO n 1 47 VAL n 1 48 ASN n 1 49 PRO n 1 50 ASN n 1 51 TYR n 1 52 ASP n 1 53 GLU n 1 54 ILE n 1 55 GLU n 1 56 GLY n 1 57 LEU n 1 58 LYS n 1 59 CYS n 1 60 TYR n 1 61 ARG n 1 62 SER n 1 63 VAL n 1 64 ARG n 1 65 GLU n 1 66 LEU n 1 67 PRO n 1 68 LYS n 1 69 ASP n 1 70 VAL n 1 71 ASP n 1 72 VAL n 1 73 ILE n 1 74 VAL n 1 75 PHE n 1 76 VAL n 1 77 VAL n 1 78 PRO n 1 79 PRO n 1 80 LYS n 1 81 VAL n 1 82 GLY n 1 83 LEU n 1 84 GLN n 1 85 VAL n 1 86 ALA n 1 87 LYS n 1 88 GLU n 1 89 ALA n 1 90 VAL n 1 91 GLU n 1 92 ALA n 1 93 GLY n 1 94 PHE n 1 95 LYS n 1 96 LYS n 1 97 LEU n 1 98 TRP n 1 99 PHE n 1 100 GLN n 1 101 PRO n 1 102 GLY n 1 103 ALA n 1 104 GLU n 1 105 SER n 1 106 GLU n 1 107 GLU n 1 108 ILE n 1 109 ARG n 1 110 ARG n 1 111 PHE n 1 112 LEU n 1 113 GLU n 1 114 LYS n 1 115 ALA n 1 116 GLY n 1 117 VAL n 1 118 GLU n 1 119 TYR n 1 120 SER n 1 121 PHE n 1 122 GLY n 1 123 ARG n 1 124 CYS n 1 125 ILE n 1 126 MSE n 1 127 VAL n 1 128 GLU n 1 129 THR n 1 130 SER n 1 131 ASN n 1 132 LYS n 1 133 LYS n 1 134 ILE n 1 135 PHE n 1 136 LEU n 1 137 GLU n 1 138 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Pyrococcus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pyrococcus furiosus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2261 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8U2V3_PYRFU _struct_ref.pdbx_db_accession Q8U2V3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NSKEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVPPKVGLQVAKEA VEAGFKKLWFQPGAESEEIRRFLEKAGVEYSFGRCIMVETSNKKIFLEV ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1Y81 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 10 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 138 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8U2V3 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 130 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 130 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1Y81 ALA A 1 ? UNP Q8U2V3 ? ? 'CLONING ARTIFACT' -7 1 1 1Y81 HIS A 2 ? UNP Q8U2V3 ? ? 'CLONING ARTIFACT' -6 2 1 1Y81 HIS A 3 ? UNP Q8U2V3 ? ? 'CLONING ARTIFACT' -5 3 1 1Y81 HIS A 4 ? UNP Q8U2V3 ? ? 'CLONING ARTIFACT' -4 4 1 1Y81 HIS A 5 ? UNP Q8U2V3 ? ? 'CLONING ARTIFACT' -3 5 1 1Y81 HIS A 6 ? UNP Q8U2V3 ? ? 'CLONING ARTIFACT' -2 6 1 1Y81 HIS A 7 ? UNP Q8U2V3 ? ? 'CLONING ARTIFACT' -1 7 1 1Y81 GLY A 8 ? UNP Q8U2V3 ? ? 'CLONING ARTIFACT' 0 8 1 1Y81 SER A 9 ? UNP Q8U2V3 ? ? 'CLONING ARTIFACT' 1 9 1 1Y81 MSE A 126 ? UNP Q8U2V3 MET 118 'MODIFIED RESIDUE' 118 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 COA non-polymer . 'COENZYME A' ? 'C21 H36 N7 O16 P3 S' 767.534 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SCN non-polymer . 'THIOCYANATE ION' ? 'C N S -1' 58.082 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNX non-polymer . 'UNKNOWN ATOM OR ION' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 1Y81 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 41.44 _exptl_crystal.density_Matthews 2.10 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'modified microbatch' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.pdbx_details '0.3M sodium thiocyanate, 35% w/v PEG 3350, modified microbatch, temperature 291K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2004-11-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9791 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_wavelength_list 0.9791 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID # _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 1.59 _reflns.number_obs 14818 _reflns.percent_possible_obs 83.100 _reflns.pdbx_Rmerge_I_obs 0.054 _reflns.pdbx_chi_squared 1.424 _reflns.entry_id 1Y81 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_low _reflns_shell.d_res_high _reflns_shell.number_measured_all _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_chi_squared _reflns_shell.number_unique_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.percent_possible_obs _reflns_shell.pdbx_redundancy _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 1.65 1.59 354 20.100 0.371 0.997 ? ? ? ? ? ? ? ? 1 1.71 1.65 837 47.100 0.332 0.975 ? ? ? ? ? ? ? ? 2 1.79 1.71 1270 72.500 0.27 1.044 ? ? ? ? ? ? ? ? 3 1.89 1.79 1629 91.800 0.229 1.080 ? ? ? ? ? ? ? ? 4 2.00 1.89 1737 98.500 0.164 1.207 ? ? ? ? ? ? ? ? 5 2.16 2.00 1776 100.000 0.122 1.375 ? ? ? ? ? ? ? ? 6 2.38 2.16 1767 100.000 0.089 1.459 ? ? ? ? ? ? ? ? 7 2.72 2.38 1800 100.000 0.069 1.588 ? ? ? ? ? ? ? ? 8 3.43 2.72 1791 100.000 0.054 1.708 ? ? ? ? ? ? ? ? 9 50.00 3.43 1857 99.800 0.039 1.468 ? ? ? ? ? ? ? ? 10 # _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.B_iso_mean 24.266 _refine.aniso_B[1][1] -0.953 _refine.aniso_B[2][2] -0.953 _refine.aniso_B[3][3] 1.429 _refine.aniso_B[1][2] -0.476 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.ls_d_res_high 1.701 _refine.ls_d_res_low 68.519 _refine.ls_number_reflns_R_free 488 _refine.ls_number_reflns_obs 13777 _refine.ls_R_factor_R_work 0.2226 _refine.ls_R_factor_R_free 0.245 _refine.ls_R_factor_all 0.223 _refine.ls_wR_factor_R_work 0.230 _refine.ls_wR_factor_R_free 0.261 _refine.ls_percent_reflns_obs 94.942 _refine.ls_percent_reflns_R_free 3.542 _refine.correlation_coeff_Fo_to_Fc 0.947 _refine.correlation_coeff_Fo_to_Fc_free 0.935 _refine.pdbx_overall_ESU_R 0.125 _refine.pdbx_overall_ESU_R_Free 0.116 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.overall_SU_R_Cruickshank_DPI 0.125 _refine.overall_SU_ML 0.082 _refine.overall_SU_B 2.468 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.entry_id 1Y81 _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_obs 0.22334 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct SAS _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 886 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 59 _refine_hist.number_atoms_solvent 23 _refine_hist.number_atoms_total 968 _refine_hist.d_res_high 1.701 _refine_hist.d_res_low 68.519 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 957 0.015 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1301 1.325 2.044 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 115 5.277 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37 35.960 25.135 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 148 12.098 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 2 17.365 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 142 0.074 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 703 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 457 0.264 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 657 0.300 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 37 0.117 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 13 0.157 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 1 0.045 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 578 1.844 2.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 929 2.766 3.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 380 2.160 2.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 372 3.297 3.000 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_low _refine_ls_shell.d_res_high _refine_ls_shell.number_reflns_all _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free _refine_ls_shell.number_reflns_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.R_factor_all _refine_ls_shell.pdbx_refine_id 20 1.745 1.701 1079 64.319 664 0.34 30 0.442 . . . . . 'X-RAY DIFFRACTION' 20 1.792 1.745 1007 79.742 776 0.313 27 0.332 . . . . . 'X-RAY DIFFRACTION' 20 1.844 1.792 1024 90.039 884 0.279 38 0.261 . . . . . 'X-RAY DIFFRACTION' 20 1.901 1.844 969 96.904 909 0.263 30 0.274 . . . . . 'X-RAY DIFFRACTION' 20 1.963 1.901 943 98.834 901 0.245 31 0.234 . . . . . 'X-RAY DIFFRACTION' 20 2.032 1.963 939 100.000 906 0.23 33 0.292 . . . . . 'X-RAY DIFFRACTION' 20 2.109 2.032 883 100.000 851 0.232 32 0.201 . . . . . 'X-RAY DIFFRACTION' 20 2.195 2.109 850 100.000 820 0.225 30 0.282 . . . . . 'X-RAY DIFFRACTION' 20 2.292 2.195 829 100.000 799 0.231 30 0.272 . . . . . 'X-RAY DIFFRACTION' 20 2.404 2.292 783 100.000 749 0.229 34 0.239 . . . . . 'X-RAY DIFFRACTION' 20 2.534 2.404 747 100.000 727 0.234 20 0.313 . . . . . 'X-RAY DIFFRACTION' 20 2.688 2.534 711 100.000 689 0.249 22 0.275 . . . . . 'X-RAY DIFFRACTION' 20 2.873 2.688 668 100.000 646 0.24 22 0.239 . . . . . 'X-RAY DIFFRACTION' 20 3.102 2.873 620 100.000 599 0.244 21 0.236 . . . . . 'X-RAY DIFFRACTION' 20 3.398 3.102 569 100.000 542 0.219 27 0.186 . . . . . 'X-RAY DIFFRACTION' 20 3.798 3.398 532 100.000 513 0.185 19 0.245 . . . . . 'X-RAY DIFFRACTION' 20 4.383 3.798 468 100.000 452 0.173 16 0.199 . . . . . 'X-RAY DIFFRACTION' 20 5.363 4.383 396 100.000 388 0.164 8 0.195 . . . . . 'X-RAY DIFFRACTION' 20 7.561 5.363 309 100.000 298 0.262 11 0.285 . . . . . 'X-RAY DIFFRACTION' 20 68.519 7.561 185 98.919 176 0.218 7 0.241 . . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 1Y81 _struct.title 'Conserved hypothetical protein Pfu-723267-001 from Pyrococcus furiosus' _struct.pdbx_descriptor 'conserved hypothetical protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;conserved hypothetical protein, Pyrococcus furiosus, hyperthermophile, Structural Genomics, PSI, Protein Structure Initiative, Southeast Collaboratory for Structural Genomics, SECSG, unknown function ; _struct_keywords.entry_id 1Y81 _struct_keywords.pdbx_keywords 'structural genomics, unknown function' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 28 ? LYS A 40 ? LYS A 20 LYS A 32 1 ? 13 HELX_P HELX_P2 2 SER A 62 ? LEU A 66 ? SER A 54 LEU A 58 5 ? 5 HELX_P HELX_P3 3 PRO A 78 ? ALA A 92 ? PRO A 70 ALA A 84 1 ? 15 HELX_P HELX_P4 4 SER A 105 ? GLY A 116 ? SER A 97 GLY A 108 1 ? 12 HELX_P HELX_P5 5 CYS A 124 ? THR A 129 ? CYS A 116 THR A 121 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A CYS 124 SG ? ? ? 1_555 C COA . S1P ? ? A CYS 116 A COA 201 1_555 ? ? ? ? ? ? ? 2.050 ? covale2 covale ? ? A ILE 125 C ? ? ? 1_555 A MSE 126 N ? ? A ILE 117 A MSE 118 1_555 ? ? ? ? ? ? ? 1.342 ? covale3 covale ? ? A MSE 126 C ? ? ? 1_555 A VAL 127 N ? ? A MSE 118 A VAL 119 1_555 ? ? ? ? ? ? ? 1.332 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 43 ? VAL A 47 ? GLU A 35 VAL A 39 A 2 LYS A 16 ? VAL A 20 ? LYS A 8 VAL A 12 A 3 VAL A 72 ? PHE A 75 ? VAL A 64 PHE A 67 A 4 LYS A 96 ? PHE A 99 ? LYS A 88 PHE A 91 A 5 GLU A 118 ? SER A 120 ? GLU A 110 SER A 112 B 1 GLU A 53 ? ILE A 54 ? GLU A 45 ILE A 46 B 2 LEU A 57 ? LYS A 58 ? LEU A 49 LYS A 50 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 43 ? O GLU A 35 N ILE A 17 ? N ILE A 9 A 2 3 N ALA A 18 ? N ALA A 10 O VAL A 74 ? O VAL A 66 A 3 4 N PHE A 75 ? N PHE A 67 O TRP A 98 ? O TRP A 90 A 4 5 N PHE A 99 ? N PHE A 91 O SER A 120 ? O SER A 112 B 1 2 N ILE A 54 ? N ILE A 46 O LEU A 57 ? O LEU A 49 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SCN A 202' AC2 Software ? ? ? ? 26 'BINDING SITE FOR RESIDUE COA A 201' AC3 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE UNX A 402' AC4 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE UNX A 403' AC5 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE UNX A 404' AC6 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE UNX A 405' AC7 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE UNX A 406' AC8 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE UNX A 407' AC9 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE UNX A 408' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASN A 25 ? ASN A 17 . ? 2_654 ? 2 AC1 6 GLN A 100 ? GLN A 92 . ? 1_555 ? 3 AC1 6 CYS A 124 ? CYS A 116 . ? 1_555 ? 4 AC1 6 ILE A 125 ? ILE A 117 . ? 1_555 ? 5 AC1 6 MSE A 126 ? MSE A 118 . ? 1_555 ? 6 AC1 6 COA C . ? COA A 201 . ? 1_555 ? 7 AC2 26 GLY A 21 ? GLY A 13 . ? 1_555 ? 8 AC2 26 SER A 23 ? SER A 15 . ? 1_555 ? 9 AC2 26 LYS A 28 ? LYS A 20 . ? 1_555 ? 10 AC2 26 TYR A 29 ? TYR A 21 . ? 3_665 ? 11 AC2 26 TYR A 29 ? TYR A 21 . ? 1_555 ? 12 AC2 26 VAL A 47 ? VAL A 39 . ? 1_555 ? 13 AC2 26 ASN A 48 ? ASN A 40 . ? 1_555 ? 14 AC2 26 PRO A 49 ? PRO A 41 . ? 1_555 ? 15 AC2 26 ASN A 50 ? ASN A 42 . ? 1_555 ? 16 AC2 26 ASN A 50 ? ASN A 42 . ? 2_654 ? 17 AC2 26 TYR A 51 ? TYR A 43 . ? 1_555 ? 18 AC2 26 TYR A 51 ? TYR A 43 . ? 2_654 ? 19 AC2 26 VAL A 76 ? VAL A 68 . ? 1_555 ? 20 AC2 26 VAL A 77 ? VAL A 69 . ? 1_555 ? 21 AC2 26 PRO A 78 ? PRO A 70 . ? 1_555 ? 22 AC2 26 VAL A 81 ? VAL A 73 . ? 1_555 ? 23 AC2 26 GLN A 100 ? GLN A 92 . ? 1_555 ? 24 AC2 26 PRO A 101 ? PRO A 93 . ? 1_555 ? 25 AC2 26 GLY A 102 ? GLY A 94 . ? 1_555 ? 26 AC2 26 CYS A 124 ? CYS A 116 . ? 1_555 ? 27 AC2 26 SCN B . ? SCN A 202 . ? 1_555 ? 28 AC2 26 HOH L . ? HOH A 308 . ? 1_555 ? 29 AC2 26 HOH L . ? HOH A 310 . ? 1_555 ? 30 AC2 26 HOH L . ? HOH A 311 . ? 1_555 ? 31 AC2 26 HOH L . ? HOH A 312 . ? 1_555 ? 32 AC2 26 HOH L . ? HOH A 323 . ? 1_555 ? 33 AC3 1 ASN A 25 ? ASN A 17 . ? 2_654 ? 34 AC4 5 GLU A 43 ? GLU A 35 . ? 1_555 ? 35 AC4 5 GLU A 53 ? GLU A 45 . ? 4_655 ? 36 AC4 5 GLY A 56 ? GLY A 48 . ? 4_655 ? 37 AC4 5 HOH L . ? HOH A 304 . ? 1_555 ? 38 AC4 5 UNX G . ? UNX A 404 . ? 1_555 ? 39 AC5 5 GLU A 43 ? GLU A 35 . ? 1_555 ? 40 AC5 5 LEU A 45 ? LEU A 37 . ? 1_555 ? 41 AC5 5 GLY A 56 ? GLY A 48 . ? 4_655 ? 42 AC5 5 UNX F . ? UNX A 403 . ? 1_555 ? 43 AC5 5 UNX H . ? UNX A 405 . ? 1_555 ? 44 AC6 4 VAL A 44 ? VAL A 36 . ? 1_555 ? 45 AC6 4 LEU A 45 ? LEU A 37 . ? 1_555 ? 46 AC6 4 UNX G . ? UNX A 404 . ? 1_555 ? 47 AC6 4 UNX I . ? UNX A 406 . ? 1_555 ? 48 AC7 4 GLU A 43 ? GLU A 35 . ? 1_555 ? 49 AC7 4 VAL A 44 ? VAL A 36 . ? 1_555 ? 50 AC7 4 UNX H . ? UNX A 405 . ? 1_555 ? 51 AC7 4 UNX J . ? UNX A 407 . ? 1_555 ? 52 AC8 4 LEU A 38 ? LEU A 30 . ? 1_555 ? 53 AC8 4 HOH L . ? HOH A 321 . ? 1_555 ? 54 AC8 4 UNX I . ? UNX A 406 . ? 1_555 ? 55 AC8 4 UNX K . ? UNX A 408 . ? 1_555 ? 56 AC9 1 UNX J . ? UNX A 407 . ? 1_555 ? # _atom_sites.entry_id 1Y81 _atom_sites.fract_transf_matrix[1][1] 0.012635 _atom_sites.fract_transf_matrix[1][2] 0.007295 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014589 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027471 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S SE X # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 -7 ? ? ? A . n A 1 2 HIS 2 -6 ? ? ? A . n A 1 3 HIS 3 -5 ? ? ? A . n A 1 4 HIS 4 -4 ? ? ? A . n A 1 5 HIS 5 -3 ? ? ? A . n A 1 6 HIS 6 -2 ? ? ? A . n A 1 7 HIS 7 -1 ? ? ? A . n A 1 8 GLY 8 0 ? ? ? A . n A 1 9 SER 9 1 ? ? ? A . n A 1 10 ASN 10 2 ? ? ? A . n A 1 11 SER 11 3 ? ? ? A . n A 1 12 LYS 12 4 ? ? ? A . n A 1 13 GLU 13 5 ? ? ? A . n A 1 14 PHE 14 6 6 PHE PHE A . n A 1 15 ARG 15 7 7 ARG ARG A . n A 1 16 LYS 16 8 8 LYS LYS A . n A 1 17 ILE 17 9 9 ILE ILE A . n A 1 18 ALA 18 10 10 ALA ALA A . n A 1 19 LEU 19 11 11 LEU LEU A . n A 1 20 VAL 20 12 12 VAL VAL A . n A 1 21 GLY 21 13 13 GLY GLY A . n A 1 22 ALA 22 14 14 ALA ALA A . n A 1 23 SER 23 15 15 SER SER A . n A 1 24 LYS 24 16 16 LYS LYS A . n A 1 25 ASN 25 17 17 ASN ASN A . n A 1 26 PRO 26 18 18 PRO PRO A . n A 1 27 ALA 27 19 19 ALA ALA A . n A 1 28 LYS 28 20 20 LYS LYS A . n A 1 29 TYR 29 21 21 TYR TYR A . n A 1 30 GLY 30 22 22 GLY GLY A . n A 1 31 ASN 31 23 23 ASN ASN A . n A 1 32 ILE 32 24 24 ILE ILE A . n A 1 33 ILE 33 25 25 ILE ILE A . n A 1 34 LEU 34 26 26 LEU LEU A . n A 1 35 LYS 35 27 27 LYS LYS A . n A 1 36 ASP 36 28 28 ASP ASP A . n A 1 37 LEU 37 29 29 LEU LEU A . n A 1 38 LEU 38 30 30 LEU LEU A . n A 1 39 SER 39 31 31 SER SER A . n A 1 40 LYS 40 32 32 LYS LYS A . n A 1 41 GLY 41 33 33 GLY GLY A . n A 1 42 PHE 42 34 34 PHE PHE A . n A 1 43 GLU 43 35 35 GLU GLU A . n A 1 44 VAL 44 36 36 VAL VAL A . n A 1 45 LEU 45 37 37 LEU LEU A . n A 1 46 PRO 46 38 38 PRO PRO A . n A 1 47 VAL 47 39 39 VAL VAL A . n A 1 48 ASN 48 40 40 ASN ASN A . n A 1 49 PRO 49 41 41 PRO PRO A . n A 1 50 ASN 50 42 42 ASN ASN A . n A 1 51 TYR 51 43 43 TYR TYR A . n A 1 52 ASP 52 44 44 ASP ASP A . n A 1 53 GLU 53 45 45 GLU GLU A . n A 1 54 ILE 54 46 46 ILE ILE A . n A 1 55 GLU 55 47 47 GLU GLU A . n A 1 56 GLY 56 48 48 GLY GLY A . n A 1 57 LEU 57 49 49 LEU LEU A . n A 1 58 LYS 58 50 50 LYS LYS A . n A 1 59 CYS 59 51 51 CYS CYS A . n A 1 60 TYR 60 52 52 TYR TYR A . n A 1 61 ARG 61 53 53 ARG ARG A . n A 1 62 SER 62 54 54 SER SER A . n A 1 63 VAL 63 55 55 VAL VAL A . n A 1 64 ARG 64 56 56 ARG ARG A . n A 1 65 GLU 65 57 57 GLU GLU A . n A 1 66 LEU 66 58 58 LEU LEU A . n A 1 67 PRO 67 59 59 PRO PRO A . n A 1 68 LYS 68 60 60 LYS LYS A . n A 1 69 ASP 69 61 61 ASP ASP A . n A 1 70 VAL 70 62 62 VAL VAL A . n A 1 71 ASP 71 63 63 ASP ASP A . n A 1 72 VAL 72 64 64 VAL VAL A . n A 1 73 ILE 73 65 65 ILE ILE A . n A 1 74 VAL 74 66 66 VAL VAL A . n A 1 75 PHE 75 67 67 PHE PHE A . n A 1 76 VAL 76 68 68 VAL VAL A . n A 1 77 VAL 77 69 69 VAL VAL A . n A 1 78 PRO 78 70 70 PRO PRO A . n A 1 79 PRO 79 71 71 PRO PRO A . n A 1 80 LYS 80 72 72 LYS LYS A . n A 1 81 VAL 81 73 73 VAL VAL A . n A 1 82 GLY 82 74 74 GLY GLY A . n A 1 83 LEU 83 75 75 LEU LEU A . n A 1 84 GLN 84 76 76 GLN GLN A . n A 1 85 VAL 85 77 77 VAL VAL A . n A 1 86 ALA 86 78 78 ALA ALA A . n A 1 87 LYS 87 79 79 LYS LYS A . n A 1 88 GLU 88 80 80 GLU GLU A . n A 1 89 ALA 89 81 81 ALA ALA A . n A 1 90 VAL 90 82 82 VAL VAL A . n A 1 91 GLU 91 83 83 GLU GLU A . n A 1 92 ALA 92 84 84 ALA ALA A . n A 1 93 GLY 93 85 85 GLY GLY A . n A 1 94 PHE 94 86 86 PHE PHE A . n A 1 95 LYS 95 87 87 LYS LYS A . n A 1 96 LYS 96 88 88 LYS LYS A . n A 1 97 LEU 97 89 89 LEU LEU A . n A 1 98 TRP 98 90 90 TRP TRP A . n A 1 99 PHE 99 91 91 PHE PHE A . n A 1 100 GLN 100 92 92 GLN GLN A . n A 1 101 PRO 101 93 93 PRO PRO A . n A 1 102 GLY 102 94 94 GLY GLY A . n A 1 103 ALA 103 95 95 ALA ALA A . n A 1 104 GLU 104 96 96 GLU GLU A . n A 1 105 SER 105 97 97 SER SER A . n A 1 106 GLU 106 98 98 GLU GLU A . n A 1 107 GLU 107 99 99 GLU GLU A . n A 1 108 ILE 108 100 100 ILE ILE A . n A 1 109 ARG 109 101 101 ARG ARG A . n A 1 110 ARG 110 102 102 ARG ARG A . n A 1 111 PHE 111 103 103 PHE PHE A . n A 1 112 LEU 112 104 104 LEU LEU A . n A 1 113 GLU 113 105 105 GLU GLU A . n A 1 114 LYS 114 106 106 LYS LYS A . n A 1 115 ALA 115 107 107 ALA ALA A . n A 1 116 GLY 116 108 108 GLY GLY A . n A 1 117 VAL 117 109 109 VAL VAL A . n A 1 118 GLU 118 110 110 GLU GLU A . n A 1 119 TYR 119 111 111 TYR TYR A . n A 1 120 SER 120 112 112 SER SER A . n A 1 121 PHE 121 113 113 PHE PHE A . n A 1 122 GLY 122 114 114 GLY GLY A . n A 1 123 ARG 123 115 115 ARG ARG A . n A 1 124 CYS 124 116 116 CYS CYS A . n A 1 125 ILE 125 117 117 ILE ILE A . n A 1 126 MSE 126 118 118 MSE MSE A . n A 1 127 VAL 127 119 119 VAL VAL A . n A 1 128 GLU 128 120 120 GLU GLU A . n A 1 129 THR 129 121 121 THR THR A . n A 1 130 SER 130 122 ? ? ? A . n A 1 131 ASN 131 123 ? ? ? A . n A 1 132 LYS 132 124 ? ? ? A . n A 1 133 LYS 133 125 ? ? ? A . n A 1 134 ILE 134 126 ? ? ? A . n A 1 135 PHE 135 127 ? ? ? A . n A 1 136 LEU 136 128 ? ? ? A . n A 1 137 GLU 137 129 ? ? ? A . n A 1 138 VAL 138 130 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Southeast Collaboratory for Structural Genomics' _pdbx_SG_project.initial_of_center SECSG _pdbx_SG_project.id 1 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SCN 1 202 202 SCN SCN A . C 3 COA 1 201 201 COA COA A . D 4 UNX 1 401 401 UNX UNX A . E 4 UNX 1 402 402 UNX UNX A . F 4 UNX 1 403 403 UNX UNX A . G 4 UNX 1 404 404 UNX UNX A . H 4 UNX 1 405 405 UNX UNX A . I 4 UNX 1 406 406 UNX UNX A . J 4 UNX 1 407 407 UNX UNX A . K 4 UNX 1 408 408 UNX UNX A . L 5 HOH 1 301 301 HOH HOH A . L 5 HOH 2 302 302 HOH HOH A . L 5 HOH 3 303 303 HOH HOH A . L 5 HOH 4 304 304 HOH HOH A . L 5 HOH 5 305 305 HOH HOH A . L 5 HOH 6 306 306 HOH HOH A . L 5 HOH 7 307 307 HOH HOH A . L 5 HOH 8 308 308 HOH HOH A . L 5 HOH 9 309 309 HOH HOH A . L 5 HOH 10 310 310 HOH HOH A . L 5 HOH 11 311 311 HOH HOH A . L 5 HOH 12 312 312 HOH HOH A . L 5 HOH 13 313 313 HOH HOH A . L 5 HOH 14 314 314 HOH HOH A . L 5 HOH 15 315 315 HOH HOH A . L 5 HOH 16 316 316 HOH HOH A . L 5 HOH 17 317 317 HOH HOH A . L 5 HOH 18 318 318 HOH HOH A . L 5 HOH 19 319 319 HOH HOH A . L 5 HOH 20 320 320 HOH HOH A . L 5 HOH 21 321 321 HOH HOH A . L 5 HOH 22 322 322 HOH HOH A . L 5 HOH 23 323 323 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 126 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 118 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-01-25 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.contact_author' 3 4 'Structure model' '_software.contact_author_email' 4 4 'Structure model' '_software.date' 5 4 'Structure model' '_software.language' 6 4 'Structure model' '_software.location' 7 4 'Structure model' '_software.name' 8 4 'Structure model' '_software.type' 9 4 'Structure model' '_software.version' # loop_ _pdbx_phasing_MAD_shell.d_res_low _pdbx_phasing_MAD_shell.d_res_high _pdbx_phasing_MAD_shell.reflns _pdbx_phasing_MAD_shell.fom 20.000 7.62 349 0.44 7.62 4.91 569 0.45 4.91 3.87 716 0.43 3.87 3.30 835 0.45 3.30 2.92 937 0.46 2.92 2.64 1030 0.45 2.64 2.44 1109 0.42 2.44 2.27 1177 0.35 # _pdbx_phasing_dm.entry_id 1Y81 _pdbx_phasing_dm.fom_acentric 0.66 _pdbx_phasing_dm.fom_centric 0.71 _pdbx_phasing_dm.fom 0.66 _pdbx_phasing_dm.reflns_acentric 7127 _pdbx_phasing_dm.reflns_centric 638 _pdbx_phasing_dm.reflns 7765 # loop_ _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 19.787 6.0 0.91 0.82 0.91 272 73 345 6.0 3.8 0.92 0.85 0.91 927 123 1050 3.8 3.0 0.85 0.81 0.85 1184 113 1297 3.0 2.6 0.74 0.74 0.74 1210 98 1308 2.6 2.3 0.59 0.60 0.59 2171 148 2319 2.3 2.1 0.31 0.42 0.32 1363 83 1446 # _phasing.method sad # _phasing_MAD.pdbx_d_res_high 2.200 _phasing_MAD.pdbx_d_res_low 20.000 _phasing_MAD.pdbx_reflns 6722 _phasing_MAD.pdbx_fom 0.43 _phasing_MAD.entry_id 1Y81 # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 SOLVE 2.06 28-Dec-2003 program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 3 RESOLVE 2.06 02-Jan-2004 program 'Terwilliger, T. C' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 4 REFMAC refmac_5.2.0005 24/04/2001 program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 5 PDB_EXTRACT 1.0 02/20/2004 program H.Yang sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C/C++ ? 6 MAR345 . ? ? ? ? 'data collection' ? ? ? 7 ISAS . ? ? ? ? phasing ? ? ? 8 ARP/wARP . ? ? ? ? 'model building' ? ? ? 9 # _pdbx_database_remark.id 300 _pdbx_database_remark.text ;BIOMOLECULE: THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN. THE BIOLOGICAL UNIT IS UNKNOWN. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 7 ? ? -126.17 -54.03 2 1 ASN A 40 ? ? -170.73 117.36 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 7 ? CB ? A ARG 15 CB 2 1 Y 1 A ARG 7 ? CG ? A ARG 15 CG 3 1 Y 1 A ARG 7 ? CD ? A ARG 15 CD 4 1 Y 1 A ARG 7 ? NE ? A ARG 15 NE 5 1 Y 1 A ARG 7 ? CZ ? A ARG 15 CZ 6 1 Y 1 A ARG 7 ? NH1 ? A ARG 15 NH1 7 1 Y 1 A ARG 7 ? NH2 ? A ARG 15 NH2 8 1 Y 1 A ARG 53 ? CD ? A ARG 61 CD 9 1 Y 1 A ARG 53 ? NE ? A ARG 61 NE 10 1 Y 1 A ARG 53 ? CZ ? A ARG 61 CZ 11 1 Y 1 A ARG 53 ? NH1 ? A ARG 61 NH1 12 1 Y 1 A ARG 53 ? NH2 ? A ARG 61 NH2 13 1 Y 1 A ARG 56 ? CD ? A ARG 64 CD 14 1 Y 1 A ARG 56 ? NE ? A ARG 64 NE 15 1 Y 1 A ARG 56 ? CZ ? A ARG 64 CZ 16 1 Y 1 A ARG 56 ? NH1 ? A ARG 64 NH1 17 1 Y 1 A ARG 56 ? NH2 ? A ARG 64 NH2 18 1 Y 1 A LYS 72 ? CD ? A LYS 80 CD 19 1 Y 1 A LYS 72 ? CE ? A LYS 80 CE 20 1 Y 1 A LYS 72 ? NZ ? A LYS 80 NZ 21 1 Y 1 A LYS 79 ? CD ? A LYS 87 CD 22 1 Y 1 A LYS 79 ? CE ? A LYS 87 CE 23 1 Y 1 A LYS 79 ? NZ ? A LYS 87 NZ 24 1 Y 1 A LYS 87 ? CG ? A LYS 95 CG 25 1 Y 1 A LYS 87 ? CD ? A LYS 95 CD 26 1 Y 1 A LYS 87 ? CE ? A LYS 95 CE 27 1 Y 1 A LYS 87 ? NZ ? A LYS 95 NZ 28 1 Y 1 A LYS 88 ? CE ? A LYS 96 CE 29 1 Y 1 A LYS 88 ? NZ ? A LYS 96 NZ 30 1 Y 1 A ARG 102 ? CG ? A ARG 110 CG 31 1 Y 1 A LYS 106 ? CD ? A LYS 114 CD 32 1 Y 1 A LYS 106 ? CE ? A LYS 114 CE 33 1 Y 1 A LYS 106 ? NZ ? A LYS 114 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA -7 ? A ALA 1 2 1 Y 1 A HIS -6 ? A HIS 2 3 1 Y 1 A HIS -5 ? A HIS 3 4 1 Y 1 A HIS -4 ? A HIS 4 5 1 Y 1 A HIS -3 ? A HIS 5 6 1 Y 1 A HIS -2 ? A HIS 6 7 1 Y 1 A HIS -1 ? A HIS 7 8 1 Y 1 A GLY 0 ? A GLY 8 9 1 Y 1 A SER 1 ? A SER 9 10 1 Y 1 A ASN 2 ? A ASN 10 11 1 Y 1 A SER 3 ? A SER 11 12 1 Y 1 A LYS 4 ? A LYS 12 13 1 Y 1 A GLU 5 ? A GLU 13 14 1 Y 1 A SER 122 ? A SER 130 15 1 Y 1 A ASN 123 ? A ASN 131 16 1 Y 1 A LYS 124 ? A LYS 132 17 1 Y 1 A LYS 125 ? A LYS 133 18 1 Y 1 A ILE 126 ? A ILE 134 19 1 Y 1 A PHE 127 ? A PHE 135 20 1 Y 1 A LEU 128 ? A LEU 136 21 1 Y 1 A GLU 129 ? A GLU 137 22 1 Y 1 A VAL 130 ? A VAL 138 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'THIOCYANATE ION' SCN 3 'COENZYME A' COA 4 'UNKNOWN ATOM OR ION' UNX 5 water HOH #