data_1Y84
# 
_entry.id   1Y84 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.376 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   1Y84         pdb_00001y84 10.2210/pdb1y84/pdb 
NDB   AD0037       ?            ?                   
RCSB  RCSB031235   ?            ?                   
WWPDB D_1000031235 ?            ?                   
# 
loop_
_pdbx_database_related.db_name 
_pdbx_database_related.db_id 
_pdbx_database_related.details 
_pdbx_database_related.content_type 
PDB 1Y7F 
;Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-[hydroxy(methyleneamino)oxy]ethyl] Thymidine (T*)
;
unspecified 
PDB 1Y86 
;Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(fluoro)ethyl] Thymidine (T*)
;
unspecified 
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        1Y84 
_pdbx_database_status.recvd_initial_deposition_date   2004-12-10 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.SG_entry                        . 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Egli, M.'      1  
'Minasov, G.'   2  
'Tereshko, V.'  3  
'Pallan, P.S.'  4  
'Teplova, M.'   5  
'Inamati, G.B.' 6  
'Lesnik, E.A.'  7  
'Owens, S.R.'   8  
'Ross, B.S.'    9  
'Prakash, T.P.' 10 
'Manoharan, M.' 11 
# 
_citation.id                        primary 
_citation.title                     
;Probing the Influence of Stereoelectronic Effects on the Biophysical Properties of Oligonucleotides: Comprehensive Analysis of the RNA Affinity, Nuclease Resistance, and Crystal Structure of Ten 2'-O-Ribonucleic Acid Modifications.
;
_citation.journal_abbrev            Biochemistry 
_citation.journal_volume            44 
_citation.page_first                9045 
_citation.page_last                 9057 
_citation.year                      2005 
_citation.journal_id_ASTM           BICHAW 
_citation.country                   US 
_citation.journal_id_ISSN           0006-2960 
_citation.journal_id_CSD            0033 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   15966728 
_citation.pdbx_database_id_DOI      10.1021/bi050574m 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Egli, M.'      1  ? 
primary 'Minasov, G.'   2  ? 
primary 'Tereshko, V.'  3  ? 
primary 'Pallan, P.S.'  4  ? 
primary 'Teplova, M.'   5  ? 
primary 'Inamati, G.B.' 6  ? 
primary 'Lesnik, E.A.'  7  ? 
primary 'Owens, S.R.'   8  ? 
primary 'Ross, B.S.'    9  ? 
primary 'Prakash, T.P.' 10 ? 
primary 'Manoharan, M.' 11 ? 
# 
_cell.entry_id           1Y84 
_cell.length_a           24.097 
_cell.length_b           43.071 
_cell.length_c           46.260 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         1Y84 
_symmetry.space_group_name_H-M             'P 21 21 21' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                19 
_symmetry.space_group_name_Hall            ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn "5'-D(*GP*CP*GP*TP*AP*(EIT)P*AP*CP*GP*C)-3'" 3155.119 2   ? ? ? ? 
2 non-polymer syn 'MAGNESIUM ION'                              24.305   1   ? ? ? ? 
3 non-polymer syn SPERMINE                                     202.340  1   ? ? ? ? 
4 water       nat water                                        18.015   114 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   yes 
_entity_poly.pdbx_seq_one_letter_code       '(DG)(DC)(DG)(DT)(DA)(EIT)(DA)(DC)(DG)(DC)' 
_entity_poly.pdbx_seq_one_letter_code_can   GCGTATACGC 
_entity_poly.pdbx_strand_id                 A,B 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  DG  n 
1 2  DC  n 
1 3  DG  n 
1 4  DT  n 
1 5  DA  n 
1 6  EIT n 
1 7  DA  n 
1 8  DC  n 
1 9  DG  n 
1 10 DC  n 
# 
_struct_ref.id                         1 
_struct_ref.entity_id                  1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    1Y84 
_struct_ref.pdbx_db_accession          1Y84 
_struct_ref.pdbx_db_isoform            ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 1Y84 A 1 ? 10 ? 1Y84 1  ? 10 ? 1  10 
2 1 1Y84 B 1 ? 10 ? 1Y84 11 ? 20 ? 11 20 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
DA  'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ?                                                        
'C10 H14 N5 O6 P' 331.222 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ?                                                        'C9 H14 N3 O7 P'  
307.197 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ?                                                        
'C10 H14 N5 O7 P' 347.221 
DT  'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ?                                                        'C10 H15 N2 O8 P' 
322.208 
EIT 'RNA linking' n 
;((3R,4R,5R)-4-(2-(1H-IMIDAZOL-1-YL)ETHOXY)-3-HYDROXY-5-(5-METHYL-2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-TETRAHYDROFURAN-2-YL)METHYL DIHYDROGEN PHOSPHATE
;
;2'-O-[1-ETHYL-1H-IMIDAZOL)] THYMIDINE-5'-MONOPHOSPHATE
;
'C15 H21 N4 O9 P' 432.322 
HOH non-polymer   . WATER ?                                                        'H2 O'            18.015  
MG  non-polymer   . 'MAGNESIUM ION' ?                                                        'Mg 2'            24.305  
SPM non-polymer   . SPERMINE ?                                                        'C10 H26 N4'      202.340 
# 
_exptl.entry_id          1Y84 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      1.90 
_exptl_crystal.density_percent_sol   35.34 
_exptl_crystal.description           ? 
_exptl_crystal.F_000                 ? 
_exptl_crystal.preparation           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, HANGING DROP' 
_exptl_crystal_grow.temp            295 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              6.0 
_exptl_crystal_grow.pdbx_details    
;10%MPD, 40mM Na-Cacodilate, 12 mM Spermine, 80mM NaCL, 12mM KCL, 20mM MgCL2, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
;
_exptl_crystal_grow.pdbx_pH_range   . 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.details 
1 1  1 MPD             ? ? ? 
1 2  1 'Na Cacodilate' ? ? ? 
1 3  1 Spermine        ? ? ? 
1 4  1 NaCL            ? ? ? 
1 5  1 KCL             ? ? ? 
1 6  1 MgCL2           ? ? ? 
1 7  1 H2O             ? ? ? 
1 8  2 MPD             ? ? ? 
1 9  2 'Na Cacodilate' ? ? ? 
1 10 2 NaCL            ? ? ? 
1 11 2 KCL             ? ? ? 
1 12 2 MgCL2           ? ? ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           110 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               'IMAGE PLATE' 
_diffrn_detector.type                   'RIGAKU RAXIS IIC' 
_diffrn_detector.pdbx_collection_date   1999-07-06 
_diffrn_detector.details                Mirrors 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   1.5418 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      'ROTATING ANODE' 
_diffrn_source.type                        'RIGAKU RU200' 
_diffrn_source.pdbx_synchrotron_site       ? 
_diffrn_source.pdbx_synchrotron_beamline   ? 
_diffrn_source.pdbx_wavelength             1.5418 
_diffrn_source.pdbx_wavelength_list        ? 
# 
_reflns.entry_id                     1Y84 
_reflns.observed_criterion_sigma_F   ? 
_reflns.observed_criterion_sigma_I   -3.0 
_reflns.d_resolution_high            1.60 
_reflns.d_resolution_low             25.0 
_reflns.number_all                   6710 
_reflns.number_obs                   6710 
_reflns.percent_possible_obs         99.2 
_reflns.pdbx_Rmerge_I_obs            0.096 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        12.8 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              4.2 
_reflns.R_free_details               ? 
_reflns.pdbx_chi_squared             ? 
_reflns.pdbx_scaling_rejects         ? 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
# 
_reflns_shell.d_res_high             1.60 
_reflns_shell.d_res_low              1.66 
_reflns_shell.percent_possible_all   95.5 
_reflns_shell.Rmerge_I_obs           0.376 
_reflns_shell.pdbx_Rsym_value        ? 
_reflns_shell.meanI_over_sigI_obs    2.9 
_reflns_shell.pdbx_redundancy        2.3 
_reflns_shell.percent_possible_obs   ? 
_reflns_shell.number_unique_all      619 
_reflns_shell.number_measured_all    ? 
_reflns_shell.number_measured_obs    ? 
_reflns_shell.number_unique_obs      ? 
_reflns_shell.pdbx_chi_squared       ? 
_reflns_shell.pdbx_diffrn_id         ? 
_reflns_shell.pdbx_ordinal           1 
# 
_refine.entry_id                                 1Y84 
_refine.ls_d_res_high                            1.60 
_refine.ls_d_res_low                             20.0 
_refine.pdbx_ls_sigma_F                          0.0 
_refine.pdbx_ls_sigma_I                          0.0 
_refine.ls_number_reflns_all                     6507 
_refine.ls_number_reflns_obs                     6507 
_refine.ls_number_reflns_R_free                  676 
_refine.ls_percent_reflns_obs                    96.5 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_obs                          ? 
_refine.ls_R_factor_R_work                       0.1648 
_refine.ls_R_factor_R_free                       0.1885 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.ls_percent_reflns_R_free                 ? 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.pdbx_method_to_determine_struct          'MOLECULAR REPLACEMENT' 
_refine.pdbx_starting_model                      'PDB entry 410D' 
_refine.pdbx_ls_cross_valid_method               THROUGHOUT 
_refine.pdbx_R_Free_selection_details            Random 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_stereochemistry_target_values       ? 
_refine.solvent_model_details                    ? 
_refine.solvent_model_param_bsol                 ? 
_refine.solvent_model_param_ksol                 ? 
_refine.occupancy_max                            ? 
_refine.occupancy_min                            ? 
_refine.pdbx_isotropic_thermal_model             Isotropic 
_refine.B_iso_mean                               21.3 
_refine.aniso_B[1][1]                            -5.987 
_refine.aniso_B[1][2]                            0.000 
_refine.aniso_B[1][3]                            0.000 
_refine.aniso_B[2][2]                            4.329 
_refine.aniso_B[2][3]                            0.000 
_refine.aniso_B[3][3]                            1.658 
_refine.details                                  'Conjugate gradient refinement using maximum likelihood target for amplitudes' 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.overall_SU_R_free                        ? 
_refine.overall_SU_B                             ? 
_refine.overall_SU_ML                            ? 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_wR_factor_R_work                      ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.overall_FOM_work_R_set                   ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   426 
_refine_hist.pdbx_number_atoms_ligand         15 
_refine_hist.number_atoms_solvent             120 
_refine_hist.number_atoms_total               561 
_refine_hist.d_res_high                       1.60 
_refine_hist.d_res_low                        20.0 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
c_angle_d   0.0082 ? ? ? 'X-RAY DIFFRACTION' ? 
c_angle_deg 1.37   ? ? ? 'X-RAY DIFFRACTION' ? 
# 
_refine_ls_shell.pdbx_total_number_of_bins_used   ? 
_refine_ls_shell.d_res_high                       1.60 
_refine_ls_shell.d_res_low                        1.64 
_refine_ls_shell.number_reflns_R_work             ? 
_refine_ls_shell.R_factor_R_work                  0.2571 
_refine_ls_shell.percent_reflns_obs               94.3 
_refine_ls_shell.R_factor_R_free                  0.2854 
_refine_ls_shell.R_factor_R_free_error            ? 
_refine_ls_shell.percent_reflns_R_free            ? 
_refine_ls_shell.number_reflns_R_free             43 
_refine_ls_shell.redundancy_reflns_obs            ? 
_refine_ls_shell.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_ls_shell.number_reflns_all                ? 
_refine_ls_shell.R_factor_all                     ? 
# 
_struct.entry_id                  1Y84 
_struct.title                     
;Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(imidazolyl)ethyl] Thymidine (T*)
;
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        1Y84 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            
;A-DNA, O2'-modification, decamer., DNA
;
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 2 ? 
D N N 3 ? 
E N N 4 ? 
F N N 4 ? 
# 
_struct_biol.id                    1 
_struct_biol.details               'Chains A and B form duplex' 
_struct_biol.pdbx_parent_biol_id   ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
covale1  covale both ? A DA  5  "O3'" ? ? ? 1_555 A EIT 6  P  ? ? A DA  5   A EIT 6   1_555 ? ? ? ? ? ? ?            1.605 ? ? 
covale2  covale both ? A EIT 6  "O3'" ? ? ? 1_555 A DA  7  P  ? ? A EIT 6   A DA  7   1_555 ? ? ? ? ? ? ?            1.599 ? ? 
covale3  covale both ? B DA  5  "O3'" ? ? ? 1_555 B EIT 6  P  ? ? B DA  15  B EIT 16  1_555 ? ? ? ? ? ? ?            1.606 ? ? 
covale4  covale both ? B EIT 6  "O3'" ? ? ? 1_555 B DA  7  P  ? ? B EIT 16  B DA  17  1_555 ? ? ? ? ? ? ?            1.606 ? ? 
metalc1  metalc ?    ? C MG  .  MG    ? ? ? 1_555 E HOH .  O  ? ? A MG  101 A HOH 102 1_555 ? ? ? ? ? ? ?            2.130 ? ? 
metalc2  metalc ?    ? C MG  .  MG    ? ? ? 1_555 E HOH .  O  ? ? A MG  101 A HOH 103 1_555 ? ? ? ? ? ? ?            2.048 ? ? 
metalc3  metalc ?    ? C MG  .  MG    ? ? ? 1_555 E HOH .  O  ? ? A MG  101 A HOH 104 1_555 ? ? ? ? ? ? ?            2.017 ? ? 
metalc4  metalc ?    ? C MG  .  MG    ? ? ? 1_555 E HOH .  O  ? ? A MG  101 A HOH 106 1_555 ? ? ? ? ? ? ?            2.052 ? ? 
metalc5  metalc ?    ? C MG  .  MG    ? ? ? 1_555 F HOH .  O  ? ? A MG  101 B HOH 105 1_555 ? ? ? ? ? ? ?            2.269 ? ? 
metalc6  metalc ?    ? C MG  .  MG    ? ? ? 1_555 F HOH .  O  ? ? A MG  101 B HOH 107 1_555 ? ? ? ? ? ? ?            1.956 ? ? 
hydrog1  hydrog ?    ? A DG  1  N1    ? ? ? 1_555 B DC  10 N3 ? ? A DG  1   B DC  20  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog2  hydrog ?    ? A DG  1  N2    ? ? ? 1_555 B DC  10 O2 ? ? A DG  1   B DC  20  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ?    ? A DG  1  O6    ? ? ? 1_555 B DC  10 N4 ? ? A DG  1   B DC  20  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ?    ? A DC  2  N3    ? ? ? 1_555 B DG  9  N1 ? ? A DC  2   B DG  19  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ?    ? A DC  2  N4    ? ? ? 1_555 B DG  9  O6 ? ? A DC  2   B DG  19  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ?    ? A DC  2  O2    ? ? ? 1_555 B DG  9  N2 ? ? A DC  2   B DG  19  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ?    ? A DG  3  N1    ? ? ? 1_555 B DC  8  N3 ? ? A DG  3   B DC  18  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ?    ? A DG  3  N2    ? ? ? 1_555 B DC  8  O2 ? ? A DG  3   B DC  18  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ?    ? A DG  3  O6    ? ? ? 1_555 B DC  8  N4 ? ? A DG  3   B DC  18  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ?    ? A DT  4  N3    ? ? ? 1_555 B DA  7  N1 ? ? A DT  4   B DA  17  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ?    ? A DT  4  O4    ? ? ? 1_555 B DA  7  N6 ? ? A DT  4   B DA  17  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ?    ? A DA  5  N1    ? ? ? 1_555 B EIT 6  N3 ? ? A DA  5   B EIT 16  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ?    ? A DA  5  N6    ? ? ? 1_555 B EIT 6  O4 ? ? A DA  5   B EIT 16  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ?    ? A EIT 6  N3    ? ? ? 1_555 B DA  5  N1 ? ? A EIT 6   B DA  15  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ?    ? A EIT 6  O4    ? ? ? 1_555 B DA  5  N6 ? ? A EIT 6   B DA  15  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog16 hydrog ?    ? A DA  7  N1    ? ? ? 1_555 B DT  4  N3 ? ? A DA  7   B DT  14  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog17 hydrog ?    ? A DA  7  N6    ? ? ? 1_555 B DT  4  O4 ? ? A DA  7   B DT  14  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog18 hydrog ?    ? A DC  8  N3    ? ? ? 1_555 B DG  3  N1 ? ? A DC  8   B DG  13  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog19 hydrog ?    ? A DC  8  N4    ? ? ? 1_555 B DG  3  O6 ? ? A DC  8   B DG  13  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog20 hydrog ?    ? A DC  8  O2    ? ? ? 1_555 B DG  3  N2 ? ? A DC  8   B DG  13  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog21 hydrog ?    ? A DG  9  N1    ? ? ? 1_555 B DC  2  N3 ? ? A DG  9   B DC  12  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog22 hydrog ?    ? A DG  9  N2    ? ? ? 1_555 B DC  2  O2 ? ? A DG  9   B DC  12  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog23 hydrog ?    ? A DG  9  O6    ? ? ? 1_555 B DC  2  N4 ? ? A DG  9   B DC  12  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog24 hydrog ?    ? A DC  10 N3    ? ? ? 1_555 B DG  1  N1 ? ? A DC  10  B DG  11  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog25 hydrog ?    ? A DC  10 N4    ? ? ? 1_555 B DG  1  O6 ? ? A DC  10  B DG  11  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog26 hydrog ?    ? A DC  10 O2    ? ? ? 1_555 B DG  1  N2 ? ? A DC  10  B DG  11  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
covale ? ? 
metalc ? ? 
hydrog ? ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software B SPM 100 ? 10 'BINDING SITE FOR RESIDUE SPM B 100' 
AC2 Software A MG  101 ? 6  'BINDING SITE FOR RESIDUE MG A 101'  
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 10 DA  A 5  ? DA  A 5   . ? 2_555 ? 
2  AC1 10 EIT A 6  ? EIT A 6   . ? 2_555 ? 
3  AC1 10 HOH E .  ? HOH A 122 . ? 4_456 ? 
4  AC1 10 DG  B 3  ? DG  B 13  . ? 1_555 ? 
5  AC1 10 DT  B 4  ? DT  B 14  . ? 1_555 ? 
6  AC1 10 DC  B 8  ? DC  B 18  . ? 2_455 ? 
7  AC1 10 DG  B 9  ? DG  B 19  . ? 2_455 ? 
8  AC1 10 DC  B 10 ? DC  B 20  . ? 2_455 ? 
9  AC1 10 HOH F .  ? HOH B 157 . ? 1_555 ? 
10 AC1 10 HOH F .  ? HOH B 163 . ? 2_455 ? 
11 AC2 6  HOH E .  ? HOH A 102 . ? 1_555 ? 
12 AC2 6  HOH E .  ? HOH A 103 . ? 1_555 ? 
13 AC2 6  HOH E .  ? HOH A 104 . ? 1_555 ? 
14 AC2 6  HOH E .  ? HOH A 106 . ? 1_555 ? 
15 AC2 6  HOH F .  ? HOH B 105 . ? 1_555 ? 
16 AC2 6  HOH F .  ? HOH B 107 . ? 1_555 ? 
# 
_database_PDB_matrix.entry_id          1Y84 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_atom_sites.entry_id                    1Y84 
_atom_sites.fract_transf_matrix[1][1]   0.041499 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.023217 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.021617 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C  
MG 
N  
O  
P  
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  DG  1  1  1  DG  G   A . n 
A 1 2  DC  2  2  2  DC  C   A . n 
A 1 3  DG  3  3  3  DG  G   A . n 
A 1 4  DT  4  4  4  DT  T   A . n 
A 1 5  DA  5  5  5  DA  A   A . n 
A 1 6  EIT 6  6  6  EIT IMI A . n 
A 1 7  DA  7  7  7  DA  A   A . n 
A 1 8  DC  8  8  8  DC  C   A . n 
A 1 9  DG  9  9  9  DG  G   A . n 
A 1 10 DC  10 10 10 DC  C   A . n 
B 1 1  DG  1  11 11 DG  G   B . n 
B 1 2  DC  2  12 12 DC  C   B . n 
B 1 3  DG  3  13 13 DG  G   B . n 
B 1 4  DT  4  14 14 DT  T   B . n 
B 1 5  DA  5  15 15 DA  A   B . n 
B 1 6  EIT 6  16 16 EIT IMI B . n 
B 1 7  DA  7  17 17 DA  A   B . n 
B 1 8  DC  8  18 18 DC  C   B . n 
B 1 9  DG  9  19 19 DG  G   B . n 
B 1 10 DC  10 20 20 DC  C   B . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
C 2 MG  1  101 101 MG  MG  A . 
D 3 SPM 1  100 100 SPM SPM B . 
E 4 HOH 1  102 102 HOH HOH A . 
E 4 HOH 2  103 103 HOH HOH A . 
E 4 HOH 3  104 104 HOH HOH A . 
E 4 HOH 4  106 106 HOH HOH A . 
E 4 HOH 5  109 109 HOH HOH A . 
E 4 HOH 6  112 112 HOH HOH A . 
E 4 HOH 7  113 113 HOH HOH A . 
E 4 HOH 8  115 115 HOH HOH A . 
E 4 HOH 9  117 117 HOH HOH A . 
E 4 HOH 10 118 118 HOH HOH A . 
E 4 HOH 11 119 119 HOH HOH A . 
E 4 HOH 12 122 122 HOH HOH A . 
E 4 HOH 13 126 126 HOH HOH A . 
E 4 HOH 14 127 127 HOH HOH A . 
E 4 HOH 15 128 128 HOH HOH A . 
E 4 HOH 16 129 129 HOH HOH A . 
E 4 HOH 17 130 130 HOH HOH A . 
E 4 HOH 18 131 131 HOH HOH A . 
E 4 HOH 19 132 132 HOH HOH A . 
E 4 HOH 20 134 134 HOH HOH A . 
E 4 HOH 21 135 135 HOH HOH A . 
E 4 HOH 22 138 138 HOH HOH A . 
E 4 HOH 23 139 139 HOH HOH A . 
E 4 HOH 24 141 141 HOH HOH A . 
E 4 HOH 25 143 143 HOH HOH A . 
E 4 HOH 26 148 148 HOH HOH A . 
E 4 HOH 27 149 149 HOH HOH A . 
E 4 HOH 28 150 150 HOH HOH A . 
E 4 HOH 29 151 151 HOH HOH A . 
E 4 HOH 30 159 159 HOH HOH A . 
E 4 HOH 31 161 161 HOH HOH A . 
E 4 HOH 32 164 164 HOH HOH A . 
E 4 HOH 33 165 165 HOH HOH A . 
E 4 HOH 34 166 166 HOH HOH A . 
E 4 HOH 35 167 167 HOH HOH A . 
E 4 HOH 36 168 168 HOH HOH A . 
E 4 HOH 37 169 169 HOH HOH A . 
E 4 HOH 38 170 170 HOH HOH A . 
E 4 HOH 39 173 173 HOH HOH A . 
E 4 HOH 40 174 174 HOH HOH A . 
E 4 HOH 41 175 175 HOH HOH A . 
E 4 HOH 42 176 176 HOH HOH A . 
E 4 HOH 43 180 180 HOH HOH A . 
E 4 HOH 44 182 182 HOH HOH A . 
E 4 HOH 45 183 183 HOH HOH A . 
E 4 HOH 46 184 184 HOH HOH A . 
E 4 HOH 47 189 189 HOH HOH A . 
E 4 HOH 48 191 191 HOH HOH A . 
E 4 HOH 49 192 192 HOH HOH A . 
E 4 HOH 50 193 193 HOH HOH A . 
E 4 HOH 51 194 194 HOH HOH A . 
E 4 HOH 52 196 196 HOH HOH A . 
E 4 HOH 53 197 197 HOH HOH A . 
E 4 HOH 54 205 205 HOH HOH A . 
E 4 HOH 55 207 207 HOH HOH A . 
E 4 HOH 56 210 210 HOH HOH A . 
E 4 HOH 57 214 214 HOH HOH A . 
E 4 HOH 58 215 215 HOH HOH A . 
F 4 HOH 1  105 105 HOH HOH B . 
F 4 HOH 2  107 107 HOH HOH B . 
F 4 HOH 3  108 108 HOH HOH B . 
F 4 HOH 4  110 110 HOH HOH B . 
F 4 HOH 5  111 111 HOH HOH B . 
F 4 HOH 6  114 114 HOH HOH B . 
F 4 HOH 7  116 116 HOH HOH B . 
F 4 HOH 8  120 120 HOH HOH B . 
F 4 HOH 9  121 121 HOH HOH B . 
F 4 HOH 10 123 123 HOH HOH B . 
F 4 HOH 11 124 124 HOH HOH B . 
F 4 HOH 12 125 125 HOH HOH B . 
F 4 HOH 13 133 133 HOH HOH B . 
F 4 HOH 14 136 136 HOH HOH B . 
F 4 HOH 15 137 137 HOH HOH B . 
F 4 HOH 16 140 140 HOH HOH B . 
F 4 HOH 17 142 142 HOH HOH B . 
F 4 HOH 18 144 144 HOH HOH B . 
F 4 HOH 19 145 145 HOH HOH B . 
F 4 HOH 20 146 146 HOH HOH B . 
F 4 HOH 21 147 147 HOH HOH B . 
F 4 HOH 22 152 152 HOH HOH B . 
F 4 HOH 23 153 153 HOH HOH B . 
F 4 HOH 24 154 154 HOH HOH B . 
F 4 HOH 25 155 155 HOH HOH B . 
F 4 HOH 26 156 156 HOH HOH B . 
F 4 HOH 27 157 157 HOH HOH B . 
F 4 HOH 28 158 158 HOH HOH B . 
F 4 HOH 29 160 160 HOH HOH B . 
F 4 HOH 30 162 162 HOH HOH B . 
F 4 HOH 31 163 163 HOH HOH B . 
F 4 HOH 32 171 171 HOH HOH B . 
F 4 HOH 33 172 172 HOH HOH B . 
F 4 HOH 34 177 177 HOH HOH B . 
F 4 HOH 35 178 178 HOH HOH B . 
F 4 HOH 36 179 179 HOH HOH B . 
F 4 HOH 37 181 181 HOH HOH B . 
F 4 HOH 38 185 185 HOH HOH B . 
F 4 HOH 39 186 186 HOH HOH B . 
F 4 HOH 40 187 187 HOH HOH B . 
F 4 HOH 41 188 188 HOH HOH B . 
F 4 HOH 42 190 190 HOH HOH B . 
F 4 HOH 43 195 195 HOH HOH B . 
F 4 HOH 44 198 198 HOH HOH B . 
F 4 HOH 45 199 199 HOH HOH B . 
F 4 HOH 46 200 200 HOH HOH B . 
F 4 HOH 47 201 201 HOH HOH B . 
F 4 HOH 48 202 202 HOH HOH B . 
F 4 HOH 49 203 203 HOH HOH B . 
F 4 HOH 50 204 204 HOH HOH B . 
F 4 HOH 51 206 206 HOH HOH B . 
F 4 HOH 52 208 208 HOH HOH B . 
F 4 HOH 53 209 209 HOH HOH B . 
F 4 HOH 54 211 211 HOH HOH B . 
F 4 HOH 55 212 212 HOH HOH B . 
F 4 HOH 56 213 213 HOH HOH B . 
# 
loop_
_pdbx_struct_mod_residue.id 
_pdbx_struct_mod_residue.label_asym_id 
_pdbx_struct_mod_residue.label_comp_id 
_pdbx_struct_mod_residue.label_seq_id 
_pdbx_struct_mod_residue.auth_asym_id 
_pdbx_struct_mod_residue.auth_comp_id 
_pdbx_struct_mod_residue.auth_seq_id 
_pdbx_struct_mod_residue.PDB_ins_code 
_pdbx_struct_mod_residue.parent_comp_id 
_pdbx_struct_mod_residue.details 
1 A EIT 6 A EIT 6  ? DT ? 
2 B EIT 6 B EIT 16 ? DT ? 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E,F 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
loop_
_pdbx_struct_conn_angle.id 
_pdbx_struct_conn_angle.ptnr1_label_atom_id 
_pdbx_struct_conn_angle.ptnr1_label_alt_id 
_pdbx_struct_conn_angle.ptnr1_label_asym_id 
_pdbx_struct_conn_angle.ptnr1_label_comp_id 
_pdbx_struct_conn_angle.ptnr1_label_seq_id 
_pdbx_struct_conn_angle.ptnr1_auth_atom_id 
_pdbx_struct_conn_angle.ptnr1_auth_asym_id 
_pdbx_struct_conn_angle.ptnr1_auth_comp_id 
_pdbx_struct_conn_angle.ptnr1_auth_seq_id 
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr1_symmetry 
_pdbx_struct_conn_angle.ptnr2_label_atom_id 
_pdbx_struct_conn_angle.ptnr2_label_alt_id 
_pdbx_struct_conn_angle.ptnr2_label_asym_id 
_pdbx_struct_conn_angle.ptnr2_label_comp_id 
_pdbx_struct_conn_angle.ptnr2_label_seq_id 
_pdbx_struct_conn_angle.ptnr2_auth_atom_id 
_pdbx_struct_conn_angle.ptnr2_auth_asym_id 
_pdbx_struct_conn_angle.ptnr2_auth_comp_id 
_pdbx_struct_conn_angle.ptnr2_auth_seq_id 
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr2_symmetry 
_pdbx_struct_conn_angle.ptnr3_label_atom_id 
_pdbx_struct_conn_angle.ptnr3_label_alt_id 
_pdbx_struct_conn_angle.ptnr3_label_asym_id 
_pdbx_struct_conn_angle.ptnr3_label_comp_id 
_pdbx_struct_conn_angle.ptnr3_label_seq_id 
_pdbx_struct_conn_angle.ptnr3_auth_atom_id 
_pdbx_struct_conn_angle.ptnr3_auth_asym_id 
_pdbx_struct_conn_angle.ptnr3_auth_comp_id 
_pdbx_struct_conn_angle.ptnr3_auth_seq_id 
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr3_symmetry 
_pdbx_struct_conn_angle.value 
_pdbx_struct_conn_angle.value_esd 
1  O ? E HOH . ? A HOH 102 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 103 ? 1_555 173.9 ? 
2  O ? E HOH . ? A HOH 102 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 104 ? 1_555 96.9  ? 
3  O ? E HOH . ? A HOH 103 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 104 ? 1_555 88.9  ? 
4  O ? E HOH . ? A HOH 102 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 106 ? 1_555 90.3  ? 
5  O ? E HOH . ? A HOH 103 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 106 ? 1_555 87.2  ? 
6  O ? E HOH . ? A HOH 104 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 106 ? 1_555 96.5  ? 
7  O ? E HOH . ? A HOH 102 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? F HOH . ? B HOH 105 ? 1_555 85.1  ? 
8  O ? E HOH . ? A HOH 103 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? F HOH . ? B HOH 105 ? 1_555 89.5  ? 
9  O ? E HOH . ? A HOH 104 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? F HOH . ? B HOH 105 ? 1_555 169.6 ? 
10 O ? E HOH . ? A HOH 106 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? F HOH . ? B HOH 105 ? 1_555 93.7  ? 
11 O ? E HOH . ? A HOH 102 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? F HOH . ? B HOH 107 ? 1_555 93.1  ? 
12 O ? E HOH . ? A HOH 103 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? F HOH . ? B HOH 107 ? 1_555 89.3  ? 
13 O ? E HOH . ? A HOH 104 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? F HOH . ? B HOH 107 ? 1_555 85.1  ? 
14 O ? E HOH . ? A HOH 106 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? F HOH . ? B HOH 107 ? 1_555 176.1 ? 
15 O ? F HOH . ? B HOH 105 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? F HOH . ? B HOH 107 ? 1_555 84.6  ? 
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2005-06-28 
2 'Structure model' 1 1 2008-04-30 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2023-08-23 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Data collection'           
4 4 'Structure model' 'Database references'       
5 4 'Structure model' 'Derived calculations'      
6 4 'Structure model' 'Refinement description'    
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' chem_comp_atom                
2 4 'Structure model' chem_comp_bond                
3 4 'Structure model' database_2                    
4 4 'Structure model' pdbx_initial_refinement_model 
5 4 'Structure model' pdbx_struct_conn_angle        
6 4 'Structure model' struct_conn                   
7 4 'Structure model' struct_site                   
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1  4 'Structure model' '_database_2.pdbx_DOI'                      
2  4 'Structure model' '_database_2.pdbx_database_accession'       
3  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 
4  4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 
5  4 'Structure model' '_pdbx_struct_conn_angle.value'             
6  4 'Structure model' '_struct_conn.pdbx_dist_value'              
7  4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'       
8  4 'Structure model' '_struct_conn.ptnr2_auth_seq_id'            
9  4 'Structure model' '_struct_site.pdbx_auth_asym_id'            
10 4 'Structure model' '_struct_site.pdbx_auth_comp_id'            
11 4 'Structure model' '_struct_site.pdbx_auth_seq_id'             
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
DENZO     'data reduction' . ? 1 
SCALEPACK 'data scaling'   . ? 2 
AMoRE     phasing          . ? 3 
CNS       refinement       . ? 4 
# 
loop_
_pdbx_validate_planes.id 
_pdbx_validate_planes.PDB_model_num 
_pdbx_validate_planes.auth_comp_id 
_pdbx_validate_planes.auth_asym_id 
_pdbx_validate_planes.auth_seq_id 
_pdbx_validate_planes.PDB_ins_code 
_pdbx_validate_planes.label_alt_id 
_pdbx_validate_planes.rmsd 
_pdbx_validate_planes.type 
1 1 DG B 11 ? ? 0.055 'SIDE CHAIN' 
2 1 DC B 12 ? ? 0.074 'SIDE CHAIN' 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
DA  OP3    O  N N 1   
DA  P      P  N N 2   
DA  OP1    O  N N 3   
DA  OP2    O  N N 4   
DA  "O5'"  O  N N 5   
DA  "C5'"  C  N N 6   
DA  "C4'"  C  N R 7   
DA  "O4'"  O  N N 8   
DA  "C3'"  C  N S 9   
DA  "O3'"  O  N N 10  
DA  "C2'"  C  N N 11  
DA  "C1'"  C  N R 12  
DA  N9     N  Y N 13  
DA  C8     C  Y N 14  
DA  N7     N  Y N 15  
DA  C5     C  Y N 16  
DA  C6     C  Y N 17  
DA  N6     N  N N 18  
DA  N1     N  Y N 19  
DA  C2     C  Y N 20  
DA  N3     N  Y N 21  
DA  C4     C  Y N 22  
DA  HOP3   H  N N 23  
DA  HOP2   H  N N 24  
DA  "H5'"  H  N N 25  
DA  "H5''" H  N N 26  
DA  "H4'"  H  N N 27  
DA  "H3'"  H  N N 28  
DA  "HO3'" H  N N 29  
DA  "H2'"  H  N N 30  
DA  "H2''" H  N N 31  
DA  "H1'"  H  N N 32  
DA  H8     H  N N 33  
DA  H61    H  N N 34  
DA  H62    H  N N 35  
DA  H2     H  N N 36  
DC  OP3    O  N N 37  
DC  P      P  N N 38  
DC  OP1    O  N N 39  
DC  OP2    O  N N 40  
DC  "O5'"  O  N N 41  
DC  "C5'"  C  N N 42  
DC  "C4'"  C  N R 43  
DC  "O4'"  O  N N 44  
DC  "C3'"  C  N S 45  
DC  "O3'"  O  N N 46  
DC  "C2'"  C  N N 47  
DC  "C1'"  C  N R 48  
DC  N1     N  N N 49  
DC  C2     C  N N 50  
DC  O2     O  N N 51  
DC  N3     N  N N 52  
DC  C4     C  N N 53  
DC  N4     N  N N 54  
DC  C5     C  N N 55  
DC  C6     C  N N 56  
DC  HOP3   H  N N 57  
DC  HOP2   H  N N 58  
DC  "H5'"  H  N N 59  
DC  "H5''" H  N N 60  
DC  "H4'"  H  N N 61  
DC  "H3'"  H  N N 62  
DC  "HO3'" H  N N 63  
DC  "H2'"  H  N N 64  
DC  "H2''" H  N N 65  
DC  "H1'"  H  N N 66  
DC  H41    H  N N 67  
DC  H42    H  N N 68  
DC  H5     H  N N 69  
DC  H6     H  N N 70  
DG  OP3    O  N N 71  
DG  P      P  N N 72  
DG  OP1    O  N N 73  
DG  OP2    O  N N 74  
DG  "O5'"  O  N N 75  
DG  "C5'"  C  N N 76  
DG  "C4'"  C  N R 77  
DG  "O4'"  O  N N 78  
DG  "C3'"  C  N S 79  
DG  "O3'"  O  N N 80  
DG  "C2'"  C  N N 81  
DG  "C1'"  C  N R 82  
DG  N9     N  Y N 83  
DG  C8     C  Y N 84  
DG  N7     N  Y N 85  
DG  C5     C  Y N 86  
DG  C6     C  N N 87  
DG  O6     O  N N 88  
DG  N1     N  N N 89  
DG  C2     C  N N 90  
DG  N2     N  N N 91  
DG  N3     N  N N 92  
DG  C4     C  Y N 93  
DG  HOP3   H  N N 94  
DG  HOP2   H  N N 95  
DG  "H5'"  H  N N 96  
DG  "H5''" H  N N 97  
DG  "H4'"  H  N N 98  
DG  "H3'"  H  N N 99  
DG  "HO3'" H  N N 100 
DG  "H2'"  H  N N 101 
DG  "H2''" H  N N 102 
DG  "H1'"  H  N N 103 
DG  H8     H  N N 104 
DG  H1     H  N N 105 
DG  H21    H  N N 106 
DG  H22    H  N N 107 
DT  OP3    O  N N 108 
DT  P      P  N N 109 
DT  OP1    O  N N 110 
DT  OP2    O  N N 111 
DT  "O5'"  O  N N 112 
DT  "C5'"  C  N N 113 
DT  "C4'"  C  N R 114 
DT  "O4'"  O  N N 115 
DT  "C3'"  C  N S 116 
DT  "O3'"  O  N N 117 
DT  "C2'"  C  N N 118 
DT  "C1'"  C  N R 119 
DT  N1     N  N N 120 
DT  C2     C  N N 121 
DT  O2     O  N N 122 
DT  N3     N  N N 123 
DT  C4     C  N N 124 
DT  O4     O  N N 125 
DT  C5     C  N N 126 
DT  C7     C  N N 127 
DT  C6     C  N N 128 
DT  HOP3   H  N N 129 
DT  HOP2   H  N N 130 
DT  "H5'"  H  N N 131 
DT  "H5''" H  N N 132 
DT  "H4'"  H  N N 133 
DT  "H3'"  H  N N 134 
DT  "HO3'" H  N N 135 
DT  "H2'"  H  N N 136 
DT  "H2''" H  N N 137 
DT  "H1'"  H  N N 138 
DT  H3     H  N N 139 
DT  H71    H  N N 140 
DT  H72    H  N N 141 
DT  H73    H  N N 142 
DT  H6     H  N N 143 
EIT P      P  N N 144 
EIT OP3    O  N N 145 
EIT OP2    O  N N 146 
EIT "O5'"  O  N N 147 
EIT "C5'"  C  N N 148 
EIT "C4'"  C  N R 149 
EIT "O4'"  O  N N 150 
EIT "C1'"  C  N R 151 
EIT N1     N  N N 152 
EIT C6     C  N N 153 
EIT C2     C  N N 154 
EIT O2     O  N N 155 
EIT N3     N  N N 156 
EIT C4     C  N N 157 
EIT O4     O  N N 158 
EIT C5     C  N N 159 
EIT C5M    C  N N 160 
EIT "C2'"  C  N R 161 
EIT "O2'"  O  N N 162 
EIT "CB'"  C  N N 163 
EIT "CC'"  C  N N 164 
EIT "ND'"  N  Y N 165 
EIT "CE'"  C  Y N 166 
EIT "NF'"  N  Y N 167 
EIT "CG'"  C  Y N 168 
EIT "CH'"  C  Y N 169 
EIT "C3'"  C  N R 170 
EIT "O3'"  O  N N 171 
EIT OP1    O  N N 172 
EIT HOP3   H  N N 173 
EIT HOP2   H  N N 174 
EIT "H5'"  H  N N 175 
EIT "H5''" H  N N 176 
EIT "H4'"  H  N N 177 
EIT "H1'"  H  N N 178 
EIT H6     H  N N 179 
EIT HN3    H  N N 180 
EIT H71    H  N N 181 
EIT H72    H  N N 182 
EIT H73    H  N N 183 
EIT "H2'"  H  N N 184 
EIT "HB'1" H  N N 185 
EIT "HB'2" H  N N 186 
EIT "HC'1" H  N N 187 
EIT "HC'2" H  N N 188 
EIT "HE'"  H  N N 189 
EIT "HG'"  H  N N 190 
EIT "HH'"  H  N N 191 
EIT "H3'"  H  N N 192 
EIT "HO3'" H  N N 193 
HOH O      O  N N 194 
HOH H1     H  N N 195 
HOH H2     H  N N 196 
MG  MG     MG N N 197 
SPM N1     N  N N 198 
SPM C2     C  N N 199 
SPM C3     C  N N 200 
SPM C4     C  N N 201 
SPM N5     N  N N 202 
SPM C6     C  N N 203 
SPM C7     C  N N 204 
SPM C8     C  N N 205 
SPM C9     C  N N 206 
SPM N10    N  N N 207 
SPM C11    C  N N 208 
SPM C12    C  N N 209 
SPM C13    C  N N 210 
SPM N14    N  N N 211 
SPM HN11   H  N N 212 
SPM HN12   H  N N 213 
SPM H21    H  N N 214 
SPM H22    H  N N 215 
SPM H31    H  N N 216 
SPM H32    H  N N 217 
SPM H41    H  N N 218 
SPM H42    H  N N 219 
SPM HN5    H  N N 220 
SPM H61    H  N N 221 
SPM H62    H  N N 222 
SPM H71    H  N N 223 
SPM H72    H  N N 224 
SPM H81    H  N N 225 
SPM H82    H  N N 226 
SPM H91    H  N N 227 
SPM H92    H  N N 228 
SPM HN0    H  N N 229 
SPM H111   H  N N 230 
SPM H112   H  N N 231 
SPM H121   H  N N 232 
SPM H122   H  N N 233 
SPM H131   H  N N 234 
SPM H132   H  N N 235 
SPM HN41   H  N N 236 
SPM HN42   H  N N 237 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DA  OP3   P      sing N N 1   
DA  OP3   HOP3   sing N N 2   
DA  P     OP1    doub N N 3   
DA  P     OP2    sing N N 4   
DA  P     "O5'"  sing N N 5   
DA  OP2   HOP2   sing N N 6   
DA  "O5'" "C5'"  sing N N 7   
DA  "C5'" "C4'"  sing N N 8   
DA  "C5'" "H5'"  sing N N 9   
DA  "C5'" "H5''" sing N N 10  
DA  "C4'" "O4'"  sing N N 11  
DA  "C4'" "C3'"  sing N N 12  
DA  "C4'" "H4'"  sing N N 13  
DA  "O4'" "C1'"  sing N N 14  
DA  "C3'" "O3'"  sing N N 15  
DA  "C3'" "C2'"  sing N N 16  
DA  "C3'" "H3'"  sing N N 17  
DA  "O3'" "HO3'" sing N N 18  
DA  "C2'" "C1'"  sing N N 19  
DA  "C2'" "H2'"  sing N N 20  
DA  "C2'" "H2''" sing N N 21  
DA  "C1'" N9     sing N N 22  
DA  "C1'" "H1'"  sing N N 23  
DA  N9    C8     sing Y N 24  
DA  N9    C4     sing Y N 25  
DA  C8    N7     doub Y N 26  
DA  C8    H8     sing N N 27  
DA  N7    C5     sing Y N 28  
DA  C5    C6     sing Y N 29  
DA  C5    C4     doub Y N 30  
DA  C6    N6     sing N N 31  
DA  C6    N1     doub Y N 32  
DA  N6    H61    sing N N 33  
DA  N6    H62    sing N N 34  
DA  N1    C2     sing Y N 35  
DA  C2    N3     doub Y N 36  
DA  C2    H2     sing N N 37  
DA  N3    C4     sing Y N 38  
DC  OP3   P      sing N N 39  
DC  OP3   HOP3   sing N N 40  
DC  P     OP1    doub N N 41  
DC  P     OP2    sing N N 42  
DC  P     "O5'"  sing N N 43  
DC  OP2   HOP2   sing N N 44  
DC  "O5'" "C5'"  sing N N 45  
DC  "C5'" "C4'"  sing N N 46  
DC  "C5'" "H5'"  sing N N 47  
DC  "C5'" "H5''" sing N N 48  
DC  "C4'" "O4'"  sing N N 49  
DC  "C4'" "C3'"  sing N N 50  
DC  "C4'" "H4'"  sing N N 51  
DC  "O4'" "C1'"  sing N N 52  
DC  "C3'" "O3'"  sing N N 53  
DC  "C3'" "C2'"  sing N N 54  
DC  "C3'" "H3'"  sing N N 55  
DC  "O3'" "HO3'" sing N N 56  
DC  "C2'" "C1'"  sing N N 57  
DC  "C2'" "H2'"  sing N N 58  
DC  "C2'" "H2''" sing N N 59  
DC  "C1'" N1     sing N N 60  
DC  "C1'" "H1'"  sing N N 61  
DC  N1    C2     sing N N 62  
DC  N1    C6     sing N N 63  
DC  C2    O2     doub N N 64  
DC  C2    N3     sing N N 65  
DC  N3    C4     doub N N 66  
DC  C4    N4     sing N N 67  
DC  C4    C5     sing N N 68  
DC  N4    H41    sing N N 69  
DC  N4    H42    sing N N 70  
DC  C5    C6     doub N N 71  
DC  C5    H5     sing N N 72  
DC  C6    H6     sing N N 73  
DG  OP3   P      sing N N 74  
DG  OP3   HOP3   sing N N 75  
DG  P     OP1    doub N N 76  
DG  P     OP2    sing N N 77  
DG  P     "O5'"  sing N N 78  
DG  OP2   HOP2   sing N N 79  
DG  "O5'" "C5'"  sing N N 80  
DG  "C5'" "C4'"  sing N N 81  
DG  "C5'" "H5'"  sing N N 82  
DG  "C5'" "H5''" sing N N 83  
DG  "C4'" "O4'"  sing N N 84  
DG  "C4'" "C3'"  sing N N 85  
DG  "C4'" "H4'"  sing N N 86  
DG  "O4'" "C1'"  sing N N 87  
DG  "C3'" "O3'"  sing N N 88  
DG  "C3'" "C2'"  sing N N 89  
DG  "C3'" "H3'"  sing N N 90  
DG  "O3'" "HO3'" sing N N 91  
DG  "C2'" "C1'"  sing N N 92  
DG  "C2'" "H2'"  sing N N 93  
DG  "C2'" "H2''" sing N N 94  
DG  "C1'" N9     sing N N 95  
DG  "C1'" "H1'"  sing N N 96  
DG  N9    C8     sing Y N 97  
DG  N9    C4     sing Y N 98  
DG  C8    N7     doub Y N 99  
DG  C8    H8     sing N N 100 
DG  N7    C5     sing Y N 101 
DG  C5    C6     sing N N 102 
DG  C5    C4     doub Y N 103 
DG  C6    O6     doub N N 104 
DG  C6    N1     sing N N 105 
DG  N1    C2     sing N N 106 
DG  N1    H1     sing N N 107 
DG  C2    N2     sing N N 108 
DG  C2    N3     doub N N 109 
DG  N2    H21    sing N N 110 
DG  N2    H22    sing N N 111 
DG  N3    C4     sing N N 112 
DT  OP3   P      sing N N 113 
DT  OP3   HOP3   sing N N 114 
DT  P     OP1    doub N N 115 
DT  P     OP2    sing N N 116 
DT  P     "O5'"  sing N N 117 
DT  OP2   HOP2   sing N N 118 
DT  "O5'" "C5'"  sing N N 119 
DT  "C5'" "C4'"  sing N N 120 
DT  "C5'" "H5'"  sing N N 121 
DT  "C5'" "H5''" sing N N 122 
DT  "C4'" "O4'"  sing N N 123 
DT  "C4'" "C3'"  sing N N 124 
DT  "C4'" "H4'"  sing N N 125 
DT  "O4'" "C1'"  sing N N 126 
DT  "C3'" "O3'"  sing N N 127 
DT  "C3'" "C2'"  sing N N 128 
DT  "C3'" "H3'"  sing N N 129 
DT  "O3'" "HO3'" sing N N 130 
DT  "C2'" "C1'"  sing N N 131 
DT  "C2'" "H2'"  sing N N 132 
DT  "C2'" "H2''" sing N N 133 
DT  "C1'" N1     sing N N 134 
DT  "C1'" "H1'"  sing N N 135 
DT  N1    C2     sing N N 136 
DT  N1    C6     sing N N 137 
DT  C2    O2     doub N N 138 
DT  C2    N3     sing N N 139 
DT  N3    C4     sing N N 140 
DT  N3    H3     sing N N 141 
DT  C4    O4     doub N N 142 
DT  C4    C5     sing N N 143 
DT  C5    C7     sing N N 144 
DT  C5    C6     doub N N 145 
DT  C7    H71    sing N N 146 
DT  C7    H72    sing N N 147 
DT  C7    H73    sing N N 148 
DT  C6    H6     sing N N 149 
EIT P     OP3    sing N N 150 
EIT P     OP2    sing N N 151 
EIT P     "O5'"  sing N N 152 
EIT P     OP1    doub N N 153 
EIT OP3   HOP3   sing N N 154 
EIT OP2   HOP2   sing N N 155 
EIT "O5'" "C5'"  sing N N 156 
EIT "C5'" "C4'"  sing N N 157 
EIT "C5'" "H5'"  sing N N 158 
EIT "C5'" "H5''" sing N N 159 
EIT "C4'" "O4'"  sing N N 160 
EIT "C4'" "C3'"  sing N N 161 
EIT "C4'" "H4'"  sing N N 162 
EIT "O4'" "C1'"  sing N N 163 
EIT "C1'" N1     sing N N 164 
EIT "C1'" "C2'"  sing N N 165 
EIT "C1'" "H1'"  sing N N 166 
EIT N1    C6     sing N N 167 
EIT N1    C2     sing N N 168 
EIT C6    C5     doub N N 169 
EIT C6    H6     sing N N 170 
EIT C2    O2     doub N N 171 
EIT C2    N3     sing N N 172 
EIT N3    C4     sing N N 173 
EIT N3    HN3    sing N N 174 
EIT C4    O4     doub N N 175 
EIT C4    C5     sing N N 176 
EIT C5    C5M    sing N N 177 
EIT C5M   H71    sing N N 178 
EIT C5M   H72    sing N N 179 
EIT C5M   H73    sing N N 180 
EIT "C2'" "O2'"  sing N N 181 
EIT "C2'" "C3'"  sing N N 182 
EIT "C2'" "H2'"  sing N N 183 
EIT "O2'" "CB'"  sing N N 184 
EIT "CB'" "CC'"  sing N N 185 
EIT "CB'" "HB'1" sing N N 186 
EIT "CB'" "HB'2" sing N N 187 
EIT "CC'" "ND'"  sing N N 188 
EIT "CC'" "HC'1" sing N N 189 
EIT "CC'" "HC'2" sing N N 190 
EIT "ND'" "CE'"  sing Y N 191 
EIT "ND'" "CH'"  sing Y N 192 
EIT "CE'" "NF'"  doub Y N 193 
EIT "CE'" "HE'"  sing N N 194 
EIT "NF'" "CG'"  sing Y N 195 
EIT "CG'" "CH'"  doub Y N 196 
EIT "CG'" "HG'"  sing N N 197 
EIT "CH'" "HH'"  sing N N 198 
EIT "C3'" "O3'"  sing N N 199 
EIT "C3'" "H3'"  sing N N 200 
EIT "O3'" "HO3'" sing N N 201 
HOH O     H1     sing N N 202 
HOH O     H2     sing N N 203 
SPM N1    C2     sing N N 204 
SPM N1    HN11   sing N N 205 
SPM N1    HN12   sing N N 206 
SPM C2    C3     sing N N 207 
SPM C2    H21    sing N N 208 
SPM C2    H22    sing N N 209 
SPM C3    C4     sing N N 210 
SPM C3    H31    sing N N 211 
SPM C3    H32    sing N N 212 
SPM C4    N5     sing N N 213 
SPM C4    H41    sing N N 214 
SPM C4    H42    sing N N 215 
SPM N5    C6     sing N N 216 
SPM N5    HN5    sing N N 217 
SPM C6    C7     sing N N 218 
SPM C6    H61    sing N N 219 
SPM C6    H62    sing N N 220 
SPM C7    C8     sing N N 221 
SPM C7    H71    sing N N 222 
SPM C7    H72    sing N N 223 
SPM C8    C9     sing N N 224 
SPM C8    H81    sing N N 225 
SPM C8    H82    sing N N 226 
SPM C9    N10    sing N N 227 
SPM C9    H91    sing N N 228 
SPM C9    H92    sing N N 229 
SPM N10   C11    sing N N 230 
SPM N10   HN0    sing N N 231 
SPM C11   C12    sing N N 232 
SPM C11   H111   sing N N 233 
SPM C11   H112   sing N N 234 
SPM C12   C13    sing N N 235 
SPM C12   H121   sing N N 236 
SPM C12   H122   sing N N 237 
SPM C13   N14    sing N N 238 
SPM C13   H131   sing N N 239 
SPM C13   H132   sing N N 240 
SPM N14   HN41   sing N N 241 
SPM N14   HN42   sing N N 242 
# 
_ndb_struct_conf_na.entry_id   1Y84 
_ndb_struct_conf_na.feature    'a-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DG  1  1_555 B DC  10 1_555 -0.216 -0.175 0.186  6.533  -7.066  -2.581 1  A_DG1:DC20_B  A 1  ? B 20 ? 19 1 
1 A DC  2  1_555 B DG  9  1_555 0.171  -0.087 -0.099 9.608  -16.579 2.643  2  A_DC2:DG19_B  A 2  ? B 19 ? 19 1 
1 A DG  3  1_555 B DC  8  1_555 -0.327 -0.113 -0.017 -9.503 -17.797 1.870  3  A_DG3:DC18_B  A 3  ? B 18 ? 19 1 
1 A DT  4  1_555 B DA  7  1_555 -0.097 -0.082 -0.061 -5.465 -17.904 1.847  4  A_DT4:DA17_B  A 4  ? B 17 ? 20 1 
1 A DA  5  1_555 B EIT 6  1_555 0.239  -0.035 0.199  -3.982 -14.142 -3.671 5  A_DA5:EIT16_B A 5  ? B 16 ? 20 1 
1 A EIT 6  1_555 B DA  5  1_555 -0.049 -0.094 0.164  2.282  -13.733 2.545  6  A_EIT6:DA15_B A 6  ? B 15 ? 20 1 
1 A DA  7  1_555 B DT  4  1_555 -0.103 -0.217 0.094  -2.335 -16.621 4.158  7  A_DA7:DT14_B  A 7  ? B 14 ? 20 1 
1 A DC  8  1_555 B DG  3  1_555 0.228  -0.190 0.058  1.770  -11.311 0.694  8  A_DC8:DG13_B  A 8  ? B 13 ? 19 1 
1 A DG  9  1_555 B DC  2  1_555 -0.147 -0.161 0.117  -4.018 -8.809  1.249  9  A_DG9:DC12_B  A 9  ? B 12 ? 19 1 
1 A DC  10 1_555 B DG  1  1_555 0.189  -0.135 -0.111 -7.331 5.043   -1.518 10 A_DC10:DG11_B A 10 ? B 11 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DG  1 1_555 B DC  10 1_555 A DC  2  1_555 B DG  9 1_555 0.713  -1.726 3.184 2.796  1.541  37.972 -2.834 -0.749 3.157 2.364  
-4.287 38.101 1 AA_DG1DC2:DG19DC20_BB   A 1 ? B 20 ? A 2  ? B 19 ? 
1 A DC  2 1_555 B DG  9  1_555 A DG  3  1_555 B DC  8 1_555 -0.167 -2.089 3.571 -1.004 14.926 26.656 -6.746 0.130  2.132 29.597 
1.991  30.501 2 AA_DC2DG3:DC18DG19_BB   A 2 ? B 19 ? A 3  ? B 18 ? 
1 A DG  3 1_555 B DC  8  1_555 A DT  4  1_555 B DA  7 1_555 -0.879 -1.432 3.020 -1.059 7.076  37.182 -3.016 1.235  2.735 10.972 
1.641  37.840 3 AA_DG3DT4:DA17DC18_BB   A 3 ? B 18 ? A 4  ? B 17 ? 
1 A DT  4 1_555 B DA  7  1_555 A DA  5  1_555 B EIT 6 1_555 0.762  -1.408 3.128 1.734  17.995 25.917 -5.401 -1.132 1.834 35.189 
-3.392 31.511 4 AA_DT4DA5:EIT16DA17_BB  A 4 ? B 17 ? A 5  ? B 16 ? 
1 A DA  5 1_555 B EIT 6  1_555 A EIT 6  1_555 B DA  5 1_555 0.597  -1.454 3.177 1.539  3.570  30.572 -3.398 -0.839 3.018 6.736  
-2.903 30.812 5 AA_DA5EIT6:DA15EIT16_BB A 5 ? B 16 ? A 6  ? B 15 ? 
1 A EIT 6 1_555 B DA  5  1_555 A DA  7  1_555 B DT  4 1_555 0.361  -1.353 3.193 1.980  13.060 31.568 -4.170 -0.331 2.473 22.798 
-3.456 34.155 6 AA_EIT6DA7:DT14DA15_BB  A 6 ? B 15 ? A 7  ? B 14 ? 
1 A DA  7 1_555 B DT  4  1_555 A DC  8  1_555 B DG  3 1_555 0.423  -1.977 3.224 1.819  2.460  32.303 -3.956 -0.447 3.087 4.408  
-3.261 32.444 7 AA_DA7DC8:DG13DT14_BB   A 7 ? B 14 ? A 8  ? B 13 ? 
1 A DC  8 1_555 B DG  3  1_555 A DG  9  1_555 B DC  2 1_555 -0.304 -2.099 3.303 1.172  11.679 23.230 -7.432 0.954  2.014 26.911 
-2.702 25.991 8 AA_DC8DG9:DC12DG13_BB   A 8 ? B 13 ? A 9  ? B 12 ? 
1 A DG  9 1_555 B DC  2  1_555 A DC  10 1_555 B DG  1 1_555 -0.044 -1.234 3.653 5.107  -4.813 35.789 -1.211 0.879  3.740 -7.740 
-8.213 36.449 9 AA_DG9DC10:DG11DC12_BB  A 9 ? B 12 ? A 10 ? B 11 ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 'MAGNESIUM ION' MG  
3 SPERMINE        SPM 
4 water           HOH 
# 
_pdbx_initial_refinement_model.id               1 
_pdbx_initial_refinement_model.entity_id_list   ? 
_pdbx_initial_refinement_model.type             'experimental model' 
_pdbx_initial_refinement_model.source_name      PDB 
_pdbx_initial_refinement_model.accession_code   410D 
_pdbx_initial_refinement_model.details          'PDB entry 410D' 
#