HEADER VIRAL PROTEIN 12-DEC-04 1Y8E OBSLTE 09-MAY-18 1Y8E TITLE VCP:SURAMIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPLEMENT CONTROL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: VCP, SECRETORY PROTEIN 35, PROTEIN C3, 28 KDA PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS; SOURCE 3 ORGANISM_TAXID: 10245; SOURCE 4 STRAIN: WESTERN RESERVE; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS BETA BARREL, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.K.GANESH,S.K.MUTHUVEL,S.A.SMITH,G.J.KOTWAL,K.H.MURTHY REVDAT 3 09-MAY-18 1Y8E 1 OBSLTE JRNL REVDAT 2 24-FEB-09 1Y8E 1 VERSN REVDAT 1 23-AUG-05 1Y8E 0 JRNL AUTH W.K.JONES JRNL TITL FINDINGS OF RESEARCH MISCONDUCT JRNL REF FED REG. V. 83 16370 2018 JRNL REFN ISSN 0097-6326 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH V.K.GANESH,S.K.MUTHUVEL,S.A.SMITH,G.J.KOTWAL,K.H.MURTHY REMARK 1 TITL STRUCTURAL BASIS FOR ANTAGONISM BY SURAMIN OF HEPARIN REMARK 1 TITL 2 BINDING TO VACCINIA COMPLEMENT PROTEIN. REMARK 1 REF BIOCHEMISTRY V. 44 10757 2005 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 16086578 REMARK 1 DOI 10.1021/BI050401X REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 150.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.5 REMARK 3 NUMBER OF REFLECTIONS : 62850 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : R-FREE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 6288 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.17 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.27 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 516 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3709 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 172 REMARK 3 SOLVENT ATOMS : 494 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.00 REMARK 3 ESD FROM SIGMAA (A) : 0.00 REMARK 3 LOW RESOLUTION CUTOFF (A) : 0.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.00 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.00 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.017 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Y8E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 5 REMARK 5 ENTRY OBSOLETED IN RESPONSE TO US OFFICE OF RESEARCH INTEGRITY REMARK 5 NOTICE 2018-07782 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1000031245. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : SI111 REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62850 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 150.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : 0.04000 REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.11300 REMARK 200 R SYM FOR SHELL (I) : 0.11300 REMARK 200 FOR SHELL : 8.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BEAST REMARK 200 STARTING MODEL: NATIVE VCP STRUCTURE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, NICL2, BETA OCTYL GLUCOSIDE, REMARK 280 PH 7.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 108 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 144 OH TYR B 147 1.42 REMARK 500 SG CYS B 2 OD2 ASP B 29 1.60 REMARK 500 OD2 ASP B 29 SG CYS B 51 1.71 REMARK 500 O ILE A 100 CB PRO A 122 1.83 REMARK 500 CB ASP B 29 CB CYS B 51 1.94 REMARK 500 CA TYR B 97 O SER B 126 2.00 REMARK 500 O SER B 16 N GLU B 18 2.09 REMARK 500 SG CYS B 2 CG ASP B 29 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 582 O HOH A 582 2555 1.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 7 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 GLU A 18 C - N - CA ANGL. DEV. = 15.3 DEGREES REMARK 500 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 THR A 57 CA - C - N ANGL. DEV. = -13.2 DEGREES REMARK 500 LEU A 58 C - N - CA ANGL. DEV. = 16.0 DEGREES REMARK 500 LEU A 58 CA - C - N ANGL. DEV. = -14.6 DEGREES REMARK 500 ARG A 65 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 66 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 LEU A 78 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 TYR A 97 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 SER A 114 N - CA - CB ANGL. DEV. = 9.6 DEGREES REMARK 500 CYS A 157 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 LEU A 197 CA - CB - CG ANGL. DEV. = 15.9 DEGREES REMARK 500 TYR A 219 CA - CB - CG ANGL. DEV. = 13.2 DEGREES REMARK 500 ARG B 7 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 40 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 65 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 66 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 LEU B 78 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 TYR B 97 CA - CB - CG ANGL. DEV. = 19.1 DEGREES REMARK 500 VAL B 116 CA - C - N ANGL. DEV. = -13.4 DEGREES REMARK 500 PRO B 122 C - N - CD ANGL. DEV. = -12.9 DEGREES REMARK 500 CYS B 171 CA - CB - SG ANGL. DEV. = 7.5 DEGREES REMARK 500 LEU B 197 CA - CB - CG ANGL. DEV. = 15.9 DEGREES REMARK 500 ARG B 203 CD - NE - CZ ANGL. DEV. = 8.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 8 136.92 -33.14 REMARK 500 ASN A 10 70.52 60.41 REMARK 500 ASN A 15 87.70 -150.91 REMARK 500 VAL A 17 98.59 -25.53 REMARK 500 GLU A 18 92.14 95.49 REMARK 500 ALA A 23 -116.71 -118.83 REMARK 500 TYR A 25 -133.30 -129.17 REMARK 500 ILE A 27 72.14 48.52 REMARK 500 PRO A 37 -72.51 -25.68 REMARK 500 MET A 44 86.42 86.82 REMARK 500 THR A 54 -53.89 157.36 REMARK 500 LEU A 58 78.95 79.47 REMARK 500 PHE A 59 -154.06 34.70 REMARK 500 ASN A 60 124.17 169.01 REMARK 500 ILE A 63 -156.96 -125.87 REMARK 500 ILE A 73 -157.16 -95.51 REMARK 500 ASP A 79 63.79 -115.21 REMARK 500 ASP A 84 -94.51 -95.03 REMARK 500 PHE A 85 84.88 -150.72 REMARK 500 SER A 95 106.87 -37.81 REMARK 500 LYS A 104 134.16 162.40 REMARK 500 SER A 111 -98.74 -161.10 REMARK 500 SER A 114 152.54 154.21 REMARK 500 ASN A 118 -84.73 -89.07 REMARK 500 GLU A 120 -40.31 -144.58 REMARK 500 SER A 126 78.58 98.33 REMARK 500 VAL A 127 94.05 99.59 REMARK 500 PRO A 132 129.87 -39.46 REMARK 500 SER A 136 -71.98 -52.89 REMARK 500 GLU A 144 -145.05 -103.33 REMARK 500 ASP A 145 -126.31 -111.73 REMARK 500 THR A 148 -150.11 44.43 REMARK 500 ASP A 149 -119.52 -98.57 REMARK 500 SER A 159 86.07 -13.58 REMARK 500 ASN A 166 -111.73 -83.99 REMARK 500 SER A 167 58.69 -146.77 REMARK 500 SER A 172 54.59 -142.16 REMARK 500 GLU A 175 139.50 -175.44 REMARK 500 ASP A 178 98.08 168.96 REMARK 500 SER A 199 99.85 -169.90 REMARK 500 SER A 206 -98.43 -111.26 REMARK 500 ASP A 209 -131.33 -106.42 REMARK 500 ASN A 210 6.12 172.29 REMARK 500 SER A 226 133.62 -178.94 REMARK 500 ASN A 233 70.35 -157.34 REMARK 500 GLU A 238 140.11 -39.97 REMARK 500 LEU A 239 113.82 -39.62 REMARK 500 VAL A 243 117.88 -161.11 REMARK 500 PRO B 8 135.19 -30.81 REMARK 500 ASN B 10 72.64 63.08 REMARK 500 REMARK 500 THIS ENTRY HAS 84 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN A 210 -20.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SVR A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SVR B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G44 RELATED DB: PDB REMARK 900 RELATED ID: 1RID RELATED DB: PDB DBREF 1Y8E A 1 244 UNP P68638 VCP_VACCV 20 263 DBREF 1Y8E B 1 244 UNP P68638 VCP_VACCV 20 263 SEQRES 1 A 244 CYS CYS THR ILE PRO SER ARG PRO ILE ASN MET LYS PHE SEQRES 2 A 244 LYS ASN SER VAL GLU THR ASP ALA ASN ALA ASN TYR ASN SEQRES 3 A 244 ILE GLY ASP THR ILE GLU TYR LEU CYS LEU PRO GLY TYR SEQRES 4 A 244 ARG LYS GLN LYS MET GLY PRO ILE TYR ALA LYS CYS THR SEQRES 5 A 244 GLY THR GLY TRP THR LEU PHE ASN GLN CYS ILE LYS ARG SEQRES 6 A 244 ARG CYS PRO SER PRO ARG ASP ILE ASP ASN GLY GLN LEU SEQRES 7 A 244 ASP ILE GLY GLY VAL ASP PHE GLY SER SER ILE THR TYR SEQRES 8 A 244 SER CYS ASN SER GLY TYR HIS LEU ILE GLY GLU SER LYS SEQRES 9 A 244 SER TYR CYS GLU LEU GLY SER THR GLY SER MET VAL TRP SEQRES 10 A 244 ASN PRO GLU ALA PRO ILE CYS GLU SER VAL LYS CYS GLN SEQRES 11 A 244 SER PRO PRO SER ILE SER ASN GLY ARG HIS ASN GLY TYR SEQRES 12 A 244 GLU ASP PHE TYR THR ASP GLY SER VAL VAL THR TYR SER SEQRES 13 A 244 CYS ASN SER GLY TYR SER LEU ILE GLY ASN SER GLY VAL SEQRES 14 A 244 LEU CYS SER GLY GLY GLU TRP SER ASP PRO PRO THR CYS SEQRES 15 A 244 GLN ILE VAL LYS CYS PRO HIS PRO THR ILE SER ASN GLY SEQRES 16 A 244 TYR LEU SER SER GLY PHE LYS ARG SER TYR SER TYR ASN SEQRES 17 A 244 ASP ASN VAL ASP PHE LYS CYS LYS TYR GLY TYR LYS LEU SEQRES 18 A 244 SER GLY SER SER SER SER THR CYS SER PRO GLY ASN THR SEQRES 19 A 244 TRP LYS PRO GLU LEU PRO LYS CYS VAL ARG SEQRES 1 B 244 CYS CYS THR ILE PRO SER ARG PRO ILE ASN MET LYS PHE SEQRES 2 B 244 LYS ASN SER VAL GLU THR ASP ALA ASN ALA ASN TYR ASN SEQRES 3 B 244 ILE GLY ASP THR ILE GLU TYR LEU CYS LEU PRO GLY TYR SEQRES 4 B 244 ARG LYS GLN LYS MET GLY PRO ILE TYR ALA LYS CYS THR SEQRES 5 B 244 GLY THR GLY TRP THR LEU PHE ASN GLN CYS ILE LYS ARG SEQRES 6 B 244 ARG CYS PRO SER PRO ARG ASP ILE ASP ASN GLY GLN LEU SEQRES 7 B 244 ASP ILE GLY GLY VAL ASP PHE GLY SER SER ILE THR TYR SEQRES 8 B 244 SER CYS ASN SER GLY TYR HIS LEU ILE GLY GLU SER LYS SEQRES 9 B 244 SER TYR CYS GLU LEU GLY SER THR GLY SER MET VAL TRP SEQRES 10 B 244 ASN PRO GLU ALA PRO ILE CYS GLU SER VAL LYS CYS GLN SEQRES 11 B 244 SER PRO PRO SER ILE SER ASN GLY ARG HIS ASN GLY TYR SEQRES 12 B 244 GLU ASP PHE TYR THR ASP GLY SER VAL VAL THR TYR SER SEQRES 13 B 244 CYS ASN SER GLY TYR SER LEU ILE GLY ASN SER GLY VAL SEQRES 14 B 244 LEU CYS SER GLY GLY GLU TRP SER ASP PRO PRO THR CYS SEQRES 15 B 244 GLN ILE VAL LYS CYS PRO HIS PRO THR ILE SER ASN GLY SEQRES 16 B 244 TYR LEU SER SER GLY PHE LYS ARG SER TYR SER TYR ASN SEQRES 17 B 244 ASP ASN VAL ASP PHE LYS CYS LYS TYR GLY TYR LYS LEU SEQRES 18 B 244 SER GLY SER SER SER SER THR CYS SER PRO GLY ASN THR SEQRES 19 B 244 TRP LYS PRO GLU LEU PRO LYS CYS VAL ARG HET SVR A 501 86 HET SVR B 502 86 HETNAM SVR 8,8'-[CARBONYLBIS[IMINO-3,1-PHENYLENECARBONYLIMINO(4- HETNAM 2 SVR METHYL-3,1-PHENYLENE)CARBONYLIMINO]]BIS-1,3,5- HETNAM 3 SVR NAPHTHALENETRISULFONIC ACID HETSYN SVR SURAMIN FORMUL 3 SVR 2(C51 H40 N6 O23 S6) FORMUL 5 HOH *494(H2 O) SHEET 1 A 3 THR A 30 ILE A 31 0 SHEET 2 A 3 ALA A 49 THR A 52 -1 O ALA A 49 N ILE A 31 SHEET 3 A 3 GLY A 55 THR A 57 -1 O THR A 57 N LYS A 50 SHEET 1 B 2 ARG A 40 LYS A 41 0 SHEET 2 B 2 CYS A 62 ILE A 63 -1 O ILE A 63 N ARG A 40 SHEET 1 C 2 HIS A 98 LEU A 99 0 SHEET 2 C 2 CYS A 124 GLU A 125 -1 O GLU A 125 N HIS A 98 SHEET 1 D 2 ARG A 139 HIS A 140 0 SHEET 2 D 2 TYR A 155 SER A 156 -1 O SER A 156 N ARG A 139 SHEET 1 E 2 SER A 162 ILE A 164 0 SHEET 2 E 2 THR A 181 GLN A 183 -1 O GLN A 183 N SER A 162 SHEET 1 F 2 LEU A 221 SER A 222 0 SHEET 2 F 2 LYS A 241 CYS A 242 -1 O LYS A 241 N SER A 222 SHEET 1 G 2 THR A 228 SER A 230 0 SHEET 2 G 2 THR A 234 LYS A 236 -1 O LYS A 236 N THR A 228 SHEET 1 H 2 THR B 30 ILE B 31 0 SHEET 2 H 2 ALA B 49 LYS B 50 -1 O ALA B 49 N ILE B 31 SHEET 1 I 2 ARG B 40 LYS B 41 0 SHEET 2 I 2 CYS B 62 ILE B 63 -1 O ILE B 63 N ARG B 40 SHEET 1 J 2 HIS B 98 ILE B 100 0 SHEET 2 J 2 ILE B 123 GLU B 125 -1 O GLU B 125 N HIS B 98 SHEET 1 K 2 SER B 162 LEU B 163 0 SHEET 2 K 2 CYS B 182 GLN B 183 -1 O GLN B 183 N SER B 162 SHEET 1 L 2 LEU B 221 SER B 222 0 SHEET 2 L 2 LYS B 241 CYS B 242 -1 O LYS B 241 N SER B 222 SHEET 1 M 2 THR B 228 SER B 230 0 SHEET 2 M 2 THR B 234 LYS B 236 -1 O LYS B 236 N THR B 228 SSBOND 1 CYS A 2 CYS A 51 1555 1555 2.03 SSBOND 2 CYS A 35 CYS A 62 1555 1555 2.02 SSBOND 3 CYS A 67 CYS A 107 1555 1555 2.02 SSBOND 4 CYS A 93 CYS A 124 1555 1555 2.03 SSBOND 5 CYS A 129 CYS A 171 1555 1555 2.03 SSBOND 6 CYS A 157 CYS A 182 1555 1555 2.02 SSBOND 7 CYS A 187 CYS A 229 1555 1555 2.03 SSBOND 8 CYS A 215 CYS A 242 1555 1555 2.03 SSBOND 9 CYS B 2 CYS B 51 1555 1555 2.03 SSBOND 10 CYS B 35 CYS B 62 1555 1555 2.03 SSBOND 11 CYS B 67 CYS B 107 1555 1555 2.03 SSBOND 12 CYS B 93 CYS B 124 1555 1555 2.03 SSBOND 13 CYS B 129 CYS B 171 1555 1555 2.03 SSBOND 14 CYS B 157 CYS B 182 1555 1555 2.02 SSBOND 15 CYS B 187 CYS B 229 1555 1555 2.03 SSBOND 16 CYS B 215 CYS B 242 1555 1555 2.03 CISPEP 1 LYS A 236 PRO A 237 0 1.94 CISPEP 2 LYS B 236 PRO B 237 0 1.55 SITE 1 AC1 20 LYS A 214 TYR A 217 LYS A 220 LEU A 221 SITE 2 AC1 20 SER A 222 LYS A 241 VAL A 243 ARG A 244 SITE 3 AC1 20 HOH A 529 HOH A 548 HOH A 557 HOH A 572 SITE 4 AC1 20 HOH A 604 HOH A 613 HOH A 635 HOH A 639 SITE 5 AC1 20 HOH A 669 HOH A 699 HOH A 726 HOH A 731 SITE 1 AC2 13 LYS B 214 TYR B 219 LYS B 220 LEU B 221 SITE 2 AC2 13 SER B 222 LYS B 241 VAL B 243 ARG B 244 SITE 3 AC2 13 HOH B 535 HOH B 543 HOH B 608 HOH B 648 SITE 4 AC2 13 HOH B 719 CRYST1 65.100 125.100 149.400 90.00 90.00 90.00 P 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015361 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007994 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006693 0.00000 CONECT 12 400 CONECT 272 485 CONECT 400 12 CONECT 485 272 CONECT 530 827 CONECT 719 950 CONECT 827 530 CONECT 950 719 CONECT 987 1298 CONECT 1203 1376 CONECT 1298 987 CONECT 1376 1203 CONECT 1415 1741 CONECT 1640 1842 CONECT 1741 1415 CONECT 1842 1640 CONECT 1867 2255 CONECT 2127 2340 CONECT 2255 1867 CONECT 2340 2127 CONECT 2385 2682 CONECT 2574 2800 CONECT 2682 2385 CONECT 2800 2574 CONECT 2837 3148 CONECT 3053 3226 CONECT 3148 2837 CONECT 3226 3053 CONECT 3265 3591 CONECT 3490 3692 CONECT 3591 3265 CONECT 3692 3490 CONECT 3712 3713 CONECT 3713 3712 3714 3715 3716 CONECT 3714 3713 CONECT 3715 3713 CONECT 3716 3713 3717 3723 CONECT 3717 3716 3718 CONECT 3718 3717 3719 3732 CONECT 3719 3718 3720 3721 3722 CONECT 3720 3719 CONECT 3721 3719 CONECT 3722 3719 CONECT 3723 3716 3724 CONECT 3724 3723 3725 3732 CONECT 3725 3724 3726 3730 CONECT 3726 3725 3727 3728 3729 CONECT 3727 3726 CONECT 3728 3726 CONECT 3729 3726 CONECT 3730 3725 3731 CONECT 3731 3730 3733 CONECT 3732 3718 3724 3733 CONECT 3733 3731 3732 3734 CONECT 3734 3733 3735 CONECT 3735 3734 3736 3737 CONECT 3736 3735 CONECT 3737 3735 3738 3739 CONECT 3738 3737 3743 CONECT 3739 3737 3740 CONECT 3740 3739 3741 CONECT 3741 3740 3742 3743 CONECT 3742 3741 CONECT 3743 3738 3741 3744 CONECT 3744 3743 3745 CONECT 3745 3744 3746 3747 CONECT 3746 3745 CONECT 3747 3745 3748 3749 CONECT 3748 3747 3752 CONECT 3749 3747 3750 CONECT 3750 3749 3751 CONECT 3751 3750 3752 CONECT 3752 3748 3751 3753 CONECT 3753 3752 3754 CONECT 3754 3753 3755 3756 CONECT 3755 3754 CONECT 3756 3754 3757 CONECT 3757 3756 3758 3759 CONECT 3758 3757 3762 CONECT 3759 3757 3760 CONECT 3760 3759 3761 CONECT 3761 3760 3762 CONECT 3762 3758 3761 3763 CONECT 3763 3762 3764 3765 CONECT 3764 3763 CONECT 3765 3763 3766 CONECT 3766 3765 3767 3768 CONECT 3767 3766 3772 CONECT 3768 3766 3769 3770 CONECT 3769 3768 CONECT 3770 3768 3771 CONECT 3771 3770 3772 CONECT 3772 3767 3771 3773 CONECT 3773 3772 3774 3775 CONECT 3774 3773 CONECT 3775 3773 3776 CONECT 3776 3775 3777 3784 CONECT 3777 3776 3778 CONECT 3778 3777 3779 CONECT 3779 3778 3780 3785 CONECT 3780 3779 3781 3782 3783 CONECT 3781 3780 CONECT 3782 3780 CONECT 3783 3780 CONECT 3784 3776 3785 3787 CONECT 3785 3779 3784 3786 CONECT 3786 3785 3793 CONECT 3787 3784 3788 3792 CONECT 3788 3787 3789 3790 3791 CONECT 3789 3788 CONECT 3790 3788 CONECT 3791 3788 CONECT 3792 3787 3793 CONECT 3793 3786 3792 3794 CONECT 3794 3793 3795 3796 3797 CONECT 3795 3794 CONECT 3796 3794 CONECT 3797 3794 CONECT 3798 3799 CONECT 3799 3798 3800 3801 3802 CONECT 3800 3799 CONECT 3801 3799 CONECT 3802 3799 3803 3809 CONECT 3803 3802 3804 CONECT 3804 3803 3805 3818 CONECT 3805 3804 3806 3807 3808 CONECT 3806 3805 CONECT 3807 3805 CONECT 3808 3805 CONECT 3809 3802 3810 CONECT 3810 3809 3811 3818 CONECT 3811 3810 3812 3816 CONECT 3812 3811 3813 3814 3815 CONECT 3813 3812 CONECT 3814 3812 CONECT 3815 3812 CONECT 3816 3811 3817 CONECT 3817 3816 3819 CONECT 3818 3804 3810 3819 CONECT 3819 3817 3818 3820 CONECT 3820 3819 3821 CONECT 3821 3820 3822 3823 CONECT 3822 3821 CONECT 3823 3821 3824 3825 CONECT 3824 3823 3829 CONECT 3825 3823 3826 CONECT 3826 3825 3827 CONECT 3827 3826 3828 3829 CONECT 3828 3827 CONECT 3829 3824 3827 3830 CONECT 3830 3829 3831 CONECT 3831 3830 3832 3833 CONECT 3832 3831 CONECT 3833 3831 3834 3835 CONECT 3834 3833 3838 CONECT 3835 3833 3836 CONECT 3836 3835 3837 CONECT 3837 3836 3838 CONECT 3838 3834 3837 3839 CONECT 3839 3838 3840 CONECT 3840 3839 3841 3842 CONECT 3841 3840 CONECT 3842 3840 3843 CONECT 3843 3842 3844 3845 CONECT 3844 3843 3848 CONECT 3845 3843 3846 CONECT 3846 3845 3847 CONECT 3847 3846 3848 CONECT 3848 3844 3847 3849 CONECT 3849 3848 3850 3851 CONECT 3850 3849 CONECT 3851 3849 3852 CONECT 3852 3851 3853 3854 CONECT 3853 3852 3858 CONECT 3854 3852 3855 3856 CONECT 3855 3854 CONECT 3856 3854 3857 CONECT 3857 3856 3858 CONECT 3858 3853 3857 3859 CONECT 3859 3858 3860 3861 CONECT 3860 3859 CONECT 3861 3859 3862 CONECT 3862 3861 3863 3870 CONECT 3863 3862 3864 CONECT 3864 3863 3865 CONECT 3865 3864 3866 3871 CONECT 3866 3865 3867 3868 3869 CONECT 3867 3866 CONECT 3868 3866 CONECT 3869 3866 CONECT 3870 3862 3871 3873 CONECT 3871 3865 3870 3872 CONECT 3872 3871 3879 CONECT 3873 3870 3874 3878 CONECT 3874 3873 3875 3876 3877 CONECT 3875 3874 CONECT 3876 3874 CONECT 3877 3874 CONECT 3878 3873 3879 CONECT 3879 3872 3878 3880 CONECT 3880 3879 3881 3882 3883 CONECT 3881 3880 CONECT 3882 3880 CONECT 3883 3880 MASTER 421 0 2 0 27 0 9 6 4375 2 204 38 END