data_1Y9L # _entry.id 1Y9L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1Y9L RCSB RCSB031288 WWPDB D_1000031288 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1Y9T _pdbx_database_related.details 'The same protein complexed with the lipid, 1-monohexanoyl-2-hydroxy-sn-glycero-3-phosphate' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1Y9L _pdbx_database_status.recvd_initial_deposition_date 2004-12-15 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lario, P.I.' 1 'Pfuetzer, R.A.' 2 'Frey, E.A.' 3 'Creagh, L.' 4 'Haynes, C.' 5 'Maurelli, A.T.' 6 'Strynadka, N.C.' 7 # _citation.id primary _citation.title 'Structure and biochemical analysis of a secretin pilot protein.' _citation.journal_abbrev 'Embo J.' _citation.journal_volume 24 _citation.page_first 1111 _citation.page_last 1121 _citation.year 2005 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15775974 _citation.pdbx_database_id_DOI 10.1038/sj.emboj.7600610 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Lario, P.I.' 1 primary 'Pfuetzner, R.A.' 2 primary 'Frey, E.A.' 3 primary 'Creagh, L.' 4 primary 'Haynes, C.' 5 primary 'Maurelli, A.T.' 6 primary 'Strynadka, N.C.' 7 # _cell.entry_id 1Y9L _cell.length_a 82.844 _cell.length_b 49.683 _cell.length_c 29.487 _cell.angle_alpha 90.00 _cell.angle_beta 102.27 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Y9L _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Lipoprotein mxiM' 12903.888 1 ? ? ? ? 2 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 3 non-polymer syn UNDECANE 156.308 1 ? ? ? ? 4 water nat water 18.015 98 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SSSNSEKEWHIVPVSKDYFSIPNDLLWSFNTTNKSINVYSKCISGKAVYSFNAGKFMGNFNVKEVDGCFMDAQKIAIDKL FSMLKDGVVLKGNKINDTILIEKDGEVKLKLIRGI ; _entity_poly.pdbx_seq_one_letter_code_can ;SSSNSEKEWHIVPVSKDYFSIPNDLLWSFNTTNKSINVYSKCISGKAVYSFNAGKFMGNFNVKEVDGCFMDAQKIAIDKL FSMLKDGVVLKGNKINDTILIEKDGEVKLKLIRGI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 SER n 1 3 SER n 1 4 ASN n 1 5 SER n 1 6 GLU n 1 7 LYS n 1 8 GLU n 1 9 TRP n 1 10 HIS n 1 11 ILE n 1 12 VAL n 1 13 PRO n 1 14 VAL n 1 15 SER n 1 16 LYS n 1 17 ASP n 1 18 TYR n 1 19 PHE n 1 20 SER n 1 21 ILE n 1 22 PRO n 1 23 ASN n 1 24 ASP n 1 25 LEU n 1 26 LEU n 1 27 TRP n 1 28 SER n 1 29 PHE n 1 30 ASN n 1 31 THR n 1 32 THR n 1 33 ASN n 1 34 LYS n 1 35 SER n 1 36 ILE n 1 37 ASN n 1 38 VAL n 1 39 TYR n 1 40 SER n 1 41 LYS n 1 42 CYS n 1 43 ILE n 1 44 SER n 1 45 GLY n 1 46 LYS n 1 47 ALA n 1 48 VAL n 1 49 TYR n 1 50 SER n 1 51 PHE n 1 52 ASN n 1 53 ALA n 1 54 GLY n 1 55 LYS n 1 56 PHE n 1 57 MET n 1 58 GLY n 1 59 ASN n 1 60 PHE n 1 61 ASN n 1 62 VAL n 1 63 LYS n 1 64 GLU n 1 65 VAL n 1 66 ASP n 1 67 GLY n 1 68 CYS n 1 69 PHE n 1 70 MET n 1 71 ASP n 1 72 ALA n 1 73 GLN n 1 74 LYS n 1 75 ILE n 1 76 ALA n 1 77 ILE n 1 78 ASP n 1 79 LYS n 1 80 LEU n 1 81 PHE n 1 82 SER n 1 83 MET n 1 84 LEU n 1 85 LYS n 1 86 ASP n 1 87 GLY n 1 88 VAL n 1 89 VAL n 1 90 LEU n 1 91 LYS n 1 92 GLY n 1 93 ASN n 1 94 LYS n 1 95 ILE n 1 96 ASN n 1 97 ASP n 1 98 THR n 1 99 ILE n 1 100 LEU n 1 101 ILE n 1 102 GLU n 1 103 LYS n 1 104 ASP n 1 105 GLY n 1 106 GLU n 1 107 VAL n 1 108 LYS n 1 109 LEU n 1 110 LYS n 1 111 LEU n 1 112 ILE n 1 113 ARG n 1 114 GLY n 1 115 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Shigella _entity_src_gen.pdbx_gene_src_gene mxiM _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Shigella flexneri' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 623 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET19B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MXIM_SHIFL _struct_ref.pdbx_db_accession P0A1X2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SSSNSEKEWHIVPVSKDYFSIPNDLLWSFNTTNKSINVYSKCISGKAVYSFNAGKFMGNFNVKEVDGCFMDAQKIAIDKL FSMLKDGVVLKGNKINDTILIEKDGEVKLKLIRGI ; _struct_ref.pdbx_align_begin 28 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1Y9L _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 115 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0A1X2 _struct_ref_seq.db_align_beg 28 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 142 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 28 _struct_ref_seq.pdbx_auth_seq_align_end 142 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UND non-polymer . UNDECANE 'LIPID FRAGMENT' 'C11 H24' 156.308 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1Y9L _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.06 _exptl_crystal.density_percent_sol 39.77 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_details '(NH4)2SO4, LiSO4, NaCH3CO2, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 173 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2003-06-13 _diffrn_detector.details 'a parabolic collimating mirror placed upstream of the monochromator' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'CRYSTAL SI(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.0 1.0 2 0.8981 1.0 3 0.9794 1.0 4 0.9796 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X8C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X8C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '1.0, 0.8981, 0.9794, 0.9796' # _reflns.entry_id 1Y9L _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.50 _reflns.d_resolution_low 20.261 _reflns.number_all 18869 _reflns.number_obs 18209 _reflns.percent_possible_obs 96.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.036 _reflns.pdbx_netI_over_sigmaI 16.5 _reflns.B_iso_Wilson_estimate 22.6 _reflns.pdbx_redundancy 3.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.53 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.421 _reflns_shell.meanI_over_sigI_obs 3.0 _reflns_shell.pdbx_redundancy 4.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1Y9L _refine.ls_number_reflns_obs 17235 _refine.ls_number_reflns_all 17871 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.261 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 96.44 _refine.ls_R_factor_obs 0.22028 _refine.ls_R_factor_all 0.22192 _refine.ls_R_factor_R_work 0.22028 _refine.ls_R_factor_R_free 0.25071 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 929 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.947 _refine.correlation_coeff_Fo_to_Fc_free 0.927 _refine.B_iso_mean 25.229 _refine.aniso_B[1][1] 0.12 _refine.aniso_B[2][2] 0.61 _refine.aniso_B[3][3] -0.67 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.14 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.095 _refine.pdbx_overall_ESU_R_Free 0.095 _refine.overall_SU_ML 0.060 _refine.overall_SU_B 3.181 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 870 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 98 _refine_hist.number_atoms_total 983 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 20.261 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.013 0.022 ? 956 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.468 1.975 ? 1296 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.706 5.000 ? 129 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.836 26.250 ? 40 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.719 15.000 ? 188 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 4.344 15.000 ? 1 'X-RAY DIFFRACTION' ? r_chiral_restr 0.106 0.200 ? 145 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 700 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.205 0.200 ? 436 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.315 0.200 ? 656 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.125 0.200 ? 70 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.256 0.200 ? 49 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.098 0.200 ? 15 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.079 1.500 ? 601 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.556 2.000 ? 943 'X-RAY DIFFRACTION' ? r_scbond_it 2.420 3.000 ? 408 'X-RAY DIFFRACTION' ? r_scangle_it 3.452 4.500 ? 343 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.500 _refine_ls_shell.d_res_low 1.539 _refine_ls_shell.number_reflns_R_work 1314 _refine_ls_shell.R_factor_R_work 0.238 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.32 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 67 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1Y9L _struct.title 'The X-ray structure of an secretion system protein' _struct.pdbx_descriptor 'Lipoprotein mxiM' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1Y9L _struct_keywords.pdbx_keywords 'LIPID BINDING PROTEIN' _struct_keywords.text 'CRACKED BETA BARREL, MIXED ALPHA/BETA, LIPID BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 15 ? PHE A 19 ? SER A 42 PHE A 46 5 ? 5 HELX_P HELX_P2 2 MET A 70 ? GLY A 87 ? MET A 97 GLY A 114 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 42 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 68 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 69 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 95 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.055 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 10 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 48 ? ASN A 52 ? VAL A 75 ASN A 79 A 2 LYS A 55 ? ASN A 59 ? LYS A 82 ASN A 86 A 3 VAL A 88 ? LYS A 91 ? VAL A 115 LYS A 118 A 4 ILE A 99 ? LYS A 103 ? ILE A 126 LYS A 130 A 5 GLU A 106 ? ARG A 113 ? GLU A 133 ARG A 140 A 6 LYS A 7 ? PRO A 13 ? LYS A 34 PRO A 40 A 7 LEU A 26 ? PHE A 29 ? LEU A 53 PHE A 56 A 8 ILE A 36 ? TYR A 39 ? ILE A 63 TYR A 66 A 9 ILE A 43 ? LYS A 46 ? ILE A 70 LYS A 73 A 10 LYS A 63 ? GLU A 64 ? LYS A 90 GLU A 91 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 48 ? N VAL A 75 O ASN A 59 ? O ASN A 86 A 2 3 N PHE A 56 ? N PHE A 83 O VAL A 88 ? O VAL A 115 A 3 4 N VAL A 89 ? N VAL A 116 O GLU A 102 ? O GLU A 129 A 4 5 N ILE A 101 ? N ILE A 128 O LEU A 109 ? O LEU A 136 A 5 6 O ILE A 112 ? O ILE A 139 N HIS A 10 ? N HIS A 37 A 6 7 N TRP A 9 ? N TRP A 36 O TRP A 27 ? O TRP A 54 A 7 8 N LEU A 26 ? N LEU A 53 O TYR A 39 ? O TYR A 66 A 8 9 N VAL A 38 ? N VAL A 65 O GLY A 45 ? O GLY A 72 A 9 10 N SER A 44 ? N SER A 71 O LYS A 63 ? O LYS A 90 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ACT A 160' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE UND A 150' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ASN A 59 ? ASN A 86 . ? 1_554 ? 2 AC1 4 MET A 70 ? MET A 97 . ? 1_555 ? 3 AC1 4 ASP A 71 ? ASP A 98 . ? 1_555 ? 4 AC1 4 LYS A 85 ? LYS A 112 . ? 1_554 ? 5 AC2 3 TRP A 27 ? TRP A 54 . ? 1_555 ? 6 AC2 3 LEU A 84 ? LEU A 111 . ? 1_555 ? 7 AC2 3 ILE A 101 ? ILE A 128 . ? 1_555 ? # _database_PDB_matrix.entry_id 1Y9L _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1Y9L _atom_sites.fract_transf_matrix[1][1] 0.012071 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002625 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020128 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.034706 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 28 ? ? ? A . n A 1 2 SER 2 29 ? ? ? A . n A 1 3 SER 3 30 ? ? ? A . n A 1 4 ASN 4 31 ? ? ? A . n A 1 5 SER 5 32 ? ? ? A . n A 1 6 GLU 6 33 33 GLU GLU A . n A 1 7 LYS 7 34 34 LYS LYS A . n A 1 8 GLU 8 35 35 GLU GLU A . n A 1 9 TRP 9 36 36 TRP TRP A . n A 1 10 HIS 10 37 37 HIS HIS A . n A 1 11 ILE 11 38 38 ILE ILE A . n A 1 12 VAL 12 39 39 VAL VAL A . n A 1 13 PRO 13 40 40 PRO PRO A . n A 1 14 VAL 14 41 41 VAL VAL A . n A 1 15 SER 15 42 42 SER SER A . n A 1 16 LYS 16 43 43 LYS LYS A . n A 1 17 ASP 17 44 44 ASP ASP A . n A 1 18 TYR 18 45 45 TYR TYR A . n A 1 19 PHE 19 46 46 PHE PHE A . n A 1 20 SER 20 47 47 SER SER A . n A 1 21 ILE 21 48 48 ILE ILE A . n A 1 22 PRO 22 49 49 PRO PRO A . n A 1 23 ASN 23 50 50 ASN ASN A . n A 1 24 ASP 24 51 51 ASP ASP A . n A 1 25 LEU 25 52 52 LEU LEU A . n A 1 26 LEU 26 53 53 LEU LEU A . n A 1 27 TRP 27 54 54 TRP TRP A . n A 1 28 SER 28 55 55 SER SER A . n A 1 29 PHE 29 56 56 PHE PHE A . n A 1 30 ASN 30 57 57 ASN ASN A . n A 1 31 THR 31 58 58 THR THR A . n A 1 32 THR 32 59 59 THR THR A . n A 1 33 ASN 33 60 60 ASN ASN A . n A 1 34 LYS 34 61 61 LYS ALA A . n A 1 35 SER 35 62 62 SER SER A . n A 1 36 ILE 36 63 63 ILE ILE A . n A 1 37 ASN 37 64 64 ASN ASN A . n A 1 38 VAL 38 65 65 VAL VAL A . n A 1 39 TYR 39 66 66 TYR TYR A . n A 1 40 SER 40 67 67 SER SER A . n A 1 41 LYS 41 68 68 LYS LYS A . n A 1 42 CYS 42 69 69 CYS CYS A . n A 1 43 ILE 43 70 70 ILE ILE A . n A 1 44 SER 44 71 71 SER SER A . n A 1 45 GLY 45 72 72 GLY GLY A . n A 1 46 LYS 46 73 73 LYS LYS A . n A 1 47 ALA 47 74 74 ALA ALA A . n A 1 48 VAL 48 75 75 VAL VAL A . n A 1 49 TYR 49 76 76 TYR TYR A . n A 1 50 SER 50 77 77 SER SER A . n A 1 51 PHE 51 78 78 PHE PHE A . n A 1 52 ASN 52 79 79 ASN ASN A . n A 1 53 ALA 53 80 80 ALA ALA A . n A 1 54 GLY 54 81 81 GLY GLY A . n A 1 55 LYS 55 82 82 LYS LYS A . n A 1 56 PHE 56 83 83 PHE PHE A . n A 1 57 MET 57 84 84 MET MET A . n A 1 58 GLY 58 85 85 GLY GLY A . n A 1 59 ASN 59 86 86 ASN ASN A . n A 1 60 PHE 60 87 87 PHE PHE A . n A 1 61 ASN 61 88 88 ASN ASN A . n A 1 62 VAL 62 89 89 VAL VAL A . n A 1 63 LYS 63 90 90 LYS LYS A . n A 1 64 GLU 64 91 91 GLU GLU A . n A 1 65 VAL 65 92 92 VAL VAL A . n A 1 66 ASP 66 93 93 ASP ASP A . n A 1 67 GLY 67 94 94 GLY GLY A . n A 1 68 CYS 68 95 95 CYS CYS A . n A 1 69 PHE 69 96 96 PHE PHE A . n A 1 70 MET 70 97 97 MET MET A . n A 1 71 ASP 71 98 98 ASP ASP A . n A 1 72 ALA 72 99 99 ALA ALA A . n A 1 73 GLN 73 100 100 GLN GLN A . n A 1 74 LYS 74 101 101 LYS LYS A . n A 1 75 ILE 75 102 102 ILE ILE A . n A 1 76 ALA 76 103 103 ALA ALA A . n A 1 77 ILE 77 104 104 ILE ILE A . n A 1 78 ASP 78 105 105 ASP ASP A . n A 1 79 LYS 79 106 106 LYS LYS A . n A 1 80 LEU 80 107 107 LEU LEU A . n A 1 81 PHE 81 108 108 PHE PHE A . n A 1 82 SER 82 109 109 SER SER A . n A 1 83 MET 83 110 110 MET MET A . n A 1 84 LEU 84 111 111 LEU LEU A . n A 1 85 LYS 85 112 112 LYS LYS A . n A 1 86 ASP 86 113 113 ASP ASP A . n A 1 87 GLY 87 114 114 GLY GLY A . n A 1 88 VAL 88 115 115 VAL VAL A . n A 1 89 VAL 89 116 116 VAL VAL A . n A 1 90 LEU 90 117 117 LEU LEU A . n A 1 91 LYS 91 118 118 LYS LYS A . n A 1 92 GLY 92 119 119 GLY GLY A . n A 1 93 ASN 93 120 120 ASN ASN A . n A 1 94 LYS 94 121 121 LYS LYS A . n A 1 95 ILE 95 122 122 ILE ILE A . n A 1 96 ASN 96 123 123 ASN ASN A . n A 1 97 ASP 97 124 124 ASP ASP A . n A 1 98 THR 98 125 125 THR THR A . n A 1 99 ILE 99 126 126 ILE ILE A . n A 1 100 LEU 100 127 127 LEU LEU A . n A 1 101 ILE 101 128 128 ILE ILE A . n A 1 102 GLU 102 129 129 GLU GLU A . n A 1 103 LYS 103 130 130 LYS LYS A . n A 1 104 ASP 104 131 131 ASP ASP A . n A 1 105 GLY 105 132 132 GLY GLY A . n A 1 106 GLU 106 133 133 GLU GLU A . n A 1 107 VAL 107 134 134 VAL VAL A . n A 1 108 LYS 108 135 135 LYS LYS A . n A 1 109 LEU 109 136 136 LEU LEU A . n A 1 110 LYS 110 137 137 LYS LYS A . n A 1 111 LEU 111 138 138 LEU LEU A . n A 1 112 ILE 112 139 139 ILE ILE A . n A 1 113 ARG 113 140 140 ARG ARG A . n A 1 114 GLY 114 141 141 GLY GLY A . n A 1 115 ILE 115 142 142 ILE ILE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT 1 160 160 ACT ACT A . C 3 UND 1 150 150 UND UND A . D 4 HOH 1 200 200 HOH HOH A . D 4 HOH 2 201 201 HOH HOH A . D 4 HOH 3 202 202 HOH HOH A . D 4 HOH 4 203 203 HOH HOH A . D 4 HOH 5 204 204 HOH HOH A . D 4 HOH 6 205 205 HOH HOH A . D 4 HOH 7 206 206 HOH HOH A . D 4 HOH 8 207 207 HOH HOH A . D 4 HOH 9 208 208 HOH HOH A . D 4 HOH 10 209 209 HOH HOH A . D 4 HOH 11 210 210 HOH HOH A . D 4 HOH 12 211 211 HOH HOH A . D 4 HOH 13 212 212 HOH HOH A . D 4 HOH 14 213 213 HOH HOH A . D 4 HOH 15 214 214 HOH HOH A . D 4 HOH 16 215 215 HOH HOH A . D 4 HOH 17 216 216 HOH HOH A . D 4 HOH 18 217 217 HOH HOH A . D 4 HOH 19 218 218 HOH HOH A . D 4 HOH 20 219 219 HOH HOH A . D 4 HOH 21 220 220 HOH HOH A . D 4 HOH 22 221 221 HOH HOH A . D 4 HOH 23 222 222 HOH HOH A . D 4 HOH 24 223 223 HOH HOH A . D 4 HOH 25 224 224 HOH HOH A . D 4 HOH 26 225 225 HOH HOH A . D 4 HOH 27 226 226 HOH HOH A . D 4 HOH 28 227 227 HOH HOH A . D 4 HOH 29 228 228 HOH HOH A . D 4 HOH 30 229 229 HOH HOH A . D 4 HOH 31 230 230 HOH HOH A . D 4 HOH 32 231 231 HOH HOH A . D 4 HOH 33 232 232 HOH HOH A . D 4 HOH 34 233 233 HOH HOH A . D 4 HOH 35 234 234 HOH HOH A . D 4 HOH 36 235 235 HOH HOH A . D 4 HOH 37 236 236 HOH HOH A . D 4 HOH 38 237 237 HOH HOH A . D 4 HOH 39 238 238 HOH HOH A . D 4 HOH 40 239 239 HOH HOH A . D 4 HOH 41 240 240 HOH HOH A . D 4 HOH 42 241 241 HOH HOH A . D 4 HOH 43 242 242 HOH HOH A . D 4 HOH 44 243 243 HOH HOH A . D 4 HOH 45 244 244 HOH HOH A . D 4 HOH 46 245 245 HOH HOH A . D 4 HOH 47 246 246 HOH HOH A . D 4 HOH 48 247 247 HOH HOH A . D 4 HOH 49 248 248 HOH HOH A . D 4 HOH 50 249 249 HOH HOH A . D 4 HOH 51 250 250 HOH HOH A . D 4 HOH 52 251 251 HOH HOH A . D 4 HOH 53 252 252 HOH HOH A . D 4 HOH 54 253 253 HOH HOH A . D 4 HOH 55 254 254 HOH HOH A . D 4 HOH 56 255 255 HOH HOH A . D 4 HOH 57 256 256 HOH HOH A . D 4 HOH 58 257 257 HOH HOH A . D 4 HOH 59 258 258 HOH HOH A . D 4 HOH 60 259 259 HOH HOH A . D 4 HOH 61 260 260 HOH HOH A . D 4 HOH 62 261 261 HOH HOH A . D 4 HOH 63 262 262 HOH HOH A . D 4 HOH 64 263 263 HOH HOH A . D 4 HOH 65 264 264 HOH HOH A . D 4 HOH 66 265 265 HOH HOH A . D 4 HOH 67 266 266 HOH HOH A . D 4 HOH 68 267 267 HOH HOH A . D 4 HOH 69 268 268 HOH HOH A . D 4 HOH 70 269 269 HOH HOH A . D 4 HOH 71 270 270 HOH HOH A . D 4 HOH 72 271 271 HOH HOH A . D 4 HOH 73 272 272 HOH HOH A . D 4 HOH 74 273 273 HOH HOH A . D 4 HOH 75 274 274 HOH HOH A . D 4 HOH 76 275 275 HOH HOH A . D 4 HOH 77 276 276 HOH HOH A . D 4 HOH 78 277 277 HOH HOH A . D 4 HOH 79 278 278 HOH HOH A . D 4 HOH 80 279 279 HOH HOH A . D 4 HOH 81 280 280 HOH HOH A . D 4 HOH 82 281 281 HOH HOH A . D 4 HOH 83 282 282 HOH HOH A . D 4 HOH 84 283 283 HOH HOH A . D 4 HOH 85 284 284 HOH HOH A . D 4 HOH 86 285 285 HOH HOH A . D 4 HOH 87 286 286 HOH HOH A . D 4 HOH 88 287 287 HOH HOH A . D 4 HOH 89 288 288 HOH HOH A . D 4 HOH 90 289 289 HOH HOH A . D 4 HOH 91 290 290 HOH HOH A . D 4 HOH 92 291 291 HOH HOH A . D 4 HOH 93 292 292 HOH HOH A . D 4 HOH 94 293 293 HOH HOH A . D 4 HOH 95 294 294 HOH HOH A . D 4 HOH 96 295 295 HOH HOH A . D 4 HOH 97 296 296 HOH HOH A . D 4 HOH 98 297 297 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-04-12 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 26.5361 42.1935 2.9441 -0.0131 -0.0237 -0.0530 0.0172 0.0142 0.0077 2.2628 1.3873 0.5702 -0.2855 0.4173 0.6750 -0.0366 -0.0842 -0.0372 0.1093 0.0804 0.0762 0.0482 0.0565 -0.0438 'X-RAY DIFFRACTION' 2 ? refined 22.1241 42.0217 6.9394 0.0206 0.0094 0.0048 -0.0176 -0.0125 0.0212 299.8457 194.8876 214.4418 209.2428 -219.7288 -102.2383 -0.4287 -1.2033 -0.3939 0.9776 0.2534 0.6697 1.5864 2.1720 0.1752 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 6 33 A 115 142 ? A A 'X-RAY DIFFRACTION' ? 2 2 C ? 150 C ? 150 ? A A 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 61 ? CG ? A LYS 34 CG 2 1 Y 1 A LYS 61 ? CD ? A LYS 34 CD 3 1 Y 1 A LYS 61 ? CE ? A LYS 34 CE 4 1 Y 1 A LYS 61 ? NZ ? A LYS 34 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 28 ? A SER 1 2 1 Y 1 A SER 29 ? A SER 2 3 1 Y 1 A SER 30 ? A SER 3 4 1 Y 1 A ASN 31 ? A ASN 4 5 1 Y 1 A SER 32 ? A SER 5 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETATE ION' ACT 3 UNDECANE UND 4 water HOH #