HEADER OXIDOREDUCTASE 03-FEB-96 1YAI TITLE X-RAY STRUCTURE OF A BACTERIAL COPPER,ZINC SUPEROXIDE DISMUTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER, ZINC SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: CU, ZN SUPEROXIDE DISMUTASE, CU, ZN SOD; COMPND 5 EC: 1.15.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHOTOBACTERIUM LEIOGNATHI; SOURCE 3 ORGANISM_TAXID: 658; SOURCE 4 STRAIN: MC1061; SOURCE 5 GENE: PHSOD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACTERIAL; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPHSOD1LACI; SOURCE 10 EXPRESSION_SYSTEM_GENE: PHSOD KEYWDS OXIDOREDUCTASE, BETA-BARREL, METALLOENZYME, MACROMOLECULAR ASSEMBLY EXPDTA X-RAY DIFFRACTION AUTHOR Y.BOURNE,S.M.REDFORD,T.P.LO,J.A.TAINER,E.D.GETZOFF REVDAT 3 09-AUG-23 1YAI 1 REMARK LINK REVDAT 2 24-FEB-09 1YAI 1 VERSN REVDAT 1 20-AUG-97 1YAI 0 JRNL AUTH Y.BOURNE,S.M.REDFORD,H.M.STEINMAN,J.R.LEPOCK,J.A.TAINER, JRNL AUTH 2 E.D.GETZOFF JRNL TITL NOVEL DIMERIC INTERFACE AND ELECTROSTATIC RECOGNITION IN JRNL TITL 2 BACTERIAL CU,ZN SUPEROXIDE DISMUTASE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 93 12774 1996 JRNL REFN ISSN 0027-8424 JRNL PMID 8917495 JRNL DOI 10.1073/PNAS.93.23.12774 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.M.REDFORD,D.E.MCREE,E.D.GETZOFF,H.M.STEINMAN,J.A.TAINER REMARK 1 TITL CRYSTALLOGRAPHIC CHARACTERIZATION OF A CU,ZN SUPEROXIDE REMARK 1 TITL 2 DISMUTASE FROM PHOTOBACTERIUM LEIOGNATHI REMARK 1 REF J.MOL.BIOL. V. 212 449 1990 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT 5E REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 75.0 REMARK 3 NUMBER OF REFLECTIONS : 26942 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : EVERY 20TH REFLECTION REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1371 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1490 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.00 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 1371 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 28333 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3314 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 358 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.013 ; 0.800 ; 3395 REMARK 3 BOND ANGLES (DEGREES) : 2.326 ; 1.300 ; 4576 REMARK 3 TORSION ANGLES (DEGREES) : 17.802; 0.000 ; 2022 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.014 ; 1.200 ; 82 REMARK 3 GENERAL PLANES (A) : 0.015 ; 3.800 ; 506 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : 3.437 ; 1.300 ; 3395 REMARK 3 NON-BONDED CONTACTS (A) : 0.027 ; 15.000; 21 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : BABINET SCALING REMARK 3 KSOL : 0.65 REMARK 3 BSOL : 204.0 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : TNT PROTGEO REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : TNT BCORREL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: X-PLOR ALSO USED REMARK 4 REMARK 4 1YAI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177352. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-91 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 116490 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04900 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 3SOD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 42% MPD, 60 MM POTASSIUM PHOSPHATE, PH REMARK 280 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.35000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.35000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 43.50000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 120.70000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 IN ALL THREE CHAINS, ARG 144 IS THE CATALYTICALLY IMPORTANT REMARK 400 RESIDUE FOR SUPEROXIDE ANION RECOGNITION. REMARK 400 REMARK 400 LYS 57, ASP 58 AND LYS 60 IN SS LOOP MAY HAVE A ROLE IN THE REMARK 400 LONG-RANGE ATTRACTION OF THE FREE RADICAL ANION. REMARK 400 REMARK 400 THE DIMER INTERFACE IS COMPLETED BY AN UNUSUAL RING OF 11 REMARK 400 HYDROGEN-BONDED SOLVENT MOLECULES BURIED WITHIN A CAVITY REMARK 400 FILLING THE DIMER INTERFACE BETWEEN TWO HYDROPHOBIC REMARK 400 CLUSTERS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN C 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 1 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 33 CD GLU A 33 OE1 0.070 REMARK 500 GLU A 74 CD GLU A 74 OE1 0.069 REMARK 500 GLU C 20 CD GLU C 20 OE1 0.068 REMARK 500 GLU C 74 CD GLU C 74 OE1 0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 85 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 91 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 133 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP B 86 CB - CG - OD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP B 86 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 111 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 111 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP C 2 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP C 58 CB - CG - OD1 ANGL. DEV. = 8.0 DEGREES REMARK 500 ASP C 58 CB - CG - OD2 ANGL. DEV. = -11.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 72 66.78 -151.05 REMARK 500 ASP A 86 33.56 -79.94 REMARK 500 ASP B 86 20.60 -77.73 REMARK 500 ASP C 36 30.86 71.02 REMARK 500 ASP C 86 43.52 -92.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 152 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 45 ND1 REMARK 620 2 HIS A 47 NE2 145.2 REMARK 620 3 HIS A 70 NE2 76.7 97.1 REMARK 620 4 HIS A 125 NE2 93.4 112.1 137.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 153 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 70 ND1 REMARK 620 2 HIS A 79 ND1 109.4 REMARK 620 3 HIS A 88 ND1 98.4 123.5 REMARK 620 4 ASP A 91 OD1 104.5 95.2 124.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 152 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 45 ND1 REMARK 620 2 HIS B 47 NE2 143.8 REMARK 620 3 HIS B 125 NE2 96.5 116.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 153 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 70 ND1 REMARK 620 2 HIS B 79 ND1 105.5 REMARK 620 3 HIS B 88 ND1 99.6 118.4 REMARK 620 4 ASP B 91 OD1 111.8 102.6 118.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C 152 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 45 ND1 REMARK 620 2 HIS C 47 NE2 142.6 REMARK 620 3 HIS C 70 NE2 77.3 100.8 REMARK 620 4 HIS C 125 NE2 91.6 107.2 145.5 REMARK 620 5 HOH C 154 O 113.2 101.2 72.2 82.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 153 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 70 ND1 REMARK 620 2 HIS C 79 ND1 116.1 REMARK 620 3 HIS C 88 ND1 97.1 122.1 REMARK 620 4 ASP C 91 OD1 101.5 98.5 120.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CU1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: COPPER BINDING SITE. REMARK 800 REMARK 800 SITE_IDENTIFIER: CU2 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: COPPER BINDING SITE. REMARK 800 REMARK 800 SITE_IDENTIFIER: CU3 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: COPPER BINDING SITE. REMARK 800 REMARK 800 SITE_IDENTIFIER: ZN1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: ZINC BINDING SITE. REMARK 800 REMARK 800 SITE_IDENTIFIER: ZN2 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: ZINC BINDING SITE. REMARK 800 REMARK 800 SITE_IDENTIFIER: ZN3 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: ZINC BINDING SITE. REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU C 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 153 DBREF 1YAI A 1 151 UNP P00446 SODC_PHOLE 23 173 DBREF 1YAI B 1 151 UNP P00446 SODC_PHOLE 23 173 DBREF 1YAI C 1 151 UNP P00446 SODC_PHOLE 23 173 SEQRES 1 A 151 GLN ASP LEU THR VAL LYS MET THR ASP LEU GLN THR GLY SEQRES 2 A 151 LYS PRO VAL GLY THR ILE GLU LEU SER GLN ASN LYS TYR SEQRES 3 A 151 GLY VAL VAL PHE THR PRO GLU LEU ALA ASP LEU THR PRO SEQRES 4 A 151 GLY MET HIS GLY PHE HIS ILE HIS GLN ASN GLY SER CYS SEQRES 5 A 151 ALA SER SER GLU LYS ASP GLY LYS VAL VAL LEU GLY GLY SEQRES 6 A 151 ALA ALA GLY GLY HIS TYR ASP PRO GLU HIS THR ASN LYS SEQRES 7 A 151 HIS GLY PHE PRO TRP THR ASP ASP ASN HIS LYS GLY ASP SEQRES 8 A 151 LEU PRO ALA LEU PHE VAL SER ALA ASN GLY LEU ALA THR SEQRES 9 A 151 ASN PRO VAL LEU ALA PRO ARG LEU THR LEU LYS GLU LEU SEQRES 10 A 151 LYS GLY HIS ALA ILE MET ILE HIS ALA GLY GLY ASP ASN SEQRES 11 A 151 HIS SER ASP MET PRO LYS ALA LEU GLY GLY GLY GLY ALA SEQRES 12 A 151 ARG VAL ALA CYS GLY VAL ILE GLN SEQRES 1 B 151 GLN ASP LEU THR VAL LYS MET THR ASP LEU GLN THR GLY SEQRES 2 B 151 LYS PRO VAL GLY THR ILE GLU LEU SER GLN ASN LYS TYR SEQRES 3 B 151 GLY VAL VAL PHE THR PRO GLU LEU ALA ASP LEU THR PRO SEQRES 4 B 151 GLY MET HIS GLY PHE HIS ILE HIS GLN ASN GLY SER CYS SEQRES 5 B 151 ALA SER SER GLU LYS ASP GLY LYS VAL VAL LEU GLY GLY SEQRES 6 B 151 ALA ALA GLY GLY HIS TYR ASP PRO GLU HIS THR ASN LYS SEQRES 7 B 151 HIS GLY PHE PRO TRP THR ASP ASP ASN HIS LYS GLY ASP SEQRES 8 B 151 LEU PRO ALA LEU PHE VAL SER ALA ASN GLY LEU ALA THR SEQRES 9 B 151 ASN PRO VAL LEU ALA PRO ARG LEU THR LEU LYS GLU LEU SEQRES 10 B 151 LYS GLY HIS ALA ILE MET ILE HIS ALA GLY GLY ASP ASN SEQRES 11 B 151 HIS SER ASP MET PRO LYS ALA LEU GLY GLY GLY GLY ALA SEQRES 12 B 151 ARG VAL ALA CYS GLY VAL ILE GLN SEQRES 1 C 151 GLN ASP LEU THR VAL LYS MET THR ASP LEU GLN THR GLY SEQRES 2 C 151 LYS PRO VAL GLY THR ILE GLU LEU SER GLN ASN LYS TYR SEQRES 3 C 151 GLY VAL VAL PHE THR PRO GLU LEU ALA ASP LEU THR PRO SEQRES 4 C 151 GLY MET HIS GLY PHE HIS ILE HIS GLN ASN GLY SER CYS SEQRES 5 C 151 ALA SER SER GLU LYS ASP GLY LYS VAL VAL LEU GLY GLY SEQRES 6 C 151 ALA ALA GLY GLY HIS TYR ASP PRO GLU HIS THR ASN LYS SEQRES 7 C 151 HIS GLY PHE PRO TRP THR ASP ASP ASN HIS LYS GLY ASP SEQRES 8 C 151 LEU PRO ALA LEU PHE VAL SER ALA ASN GLY LEU ALA THR SEQRES 9 C 151 ASN PRO VAL LEU ALA PRO ARG LEU THR LEU LYS GLU LEU SEQRES 10 C 151 LYS GLY HIS ALA ILE MET ILE HIS ALA GLY GLY ASP ASN SEQRES 11 C 151 HIS SER ASP MET PRO LYS ALA LEU GLY GLY GLY GLY ALA SEQRES 12 C 151 ARG VAL ALA CYS GLY VAL ILE GLN HET CU A 152 1 HET ZN A 153 1 HET CU B 152 1 HET ZN B 153 1 HET CU C 152 1 HET ZN C 153 1 HETNAM CU COPPER (II) ION HETNAM ZN ZINC ION FORMUL 4 CU 3(CU 2+) FORMUL 5 ZN 3(ZN 2+) FORMUL 10 HOH *358(H2 O) HELIX 1 1 THR A 113 LYS A 118 1 6 HELIX 2 2 THR B 113 LYS B 118 1 6 HELIX 3 3 THR C 113 LYS C 118 1 6 SHEET 1 A 4 GLY A 101 ALA A 109 0 SHEET 2 A 4 GLY A 27 ASP A 36 -1 N PHE A 30 O VAL A 107 SHEET 3 A 4 LYS A 14 ASN A 24 -1 N ASN A 24 O GLY A 27 SHEET 4 A 4 LEU A 3 LEU A 10 -1 N MET A 7 O VAL A 16 SHEET 1 B 4 GLY A 90 VAL A 97 0 SHEET 2 B 4 GLY A 40 HIS A 47 -1 O GLY A 40 N VAL A 97 SHEET 3 B 4 GLY A 119 GLY A 127 -1 N MET A 123 O HIS A 45 SHEET 4 B 4 GLY A 141 ILE A 150 -1 N GLY A 148 O ILE A 122 SHEET 1 C 2 SER A 55 LYS A 57 0 SHEET 2 C 2 LYS A 60 VAL A 62 -1 N VAL A 62 O SER A 55 SHEET 1 D 4 GLY B 101 ALA B 109 0 SHEET 2 D 4 GLY B 27 ASP B 36 -1 N PHE B 30 O VAL B 107 SHEET 3 D 4 LYS B 14 ASN B 24 -1 N ASN B 24 O GLY B 27 SHEET 4 D 4 LEU B 3 LEU B 10 -1 N MET B 7 O VAL B 16 SHEET 1 E 4 GLY B 90 VAL B 97 0 SHEET 2 E 4 GLY B 40 HIS B 47 -1 O GLY B 40 N VAL B 97 SHEET 3 E 4 GLY B 119 GLY B 127 -1 N MET B 123 O HIS B 45 SHEET 4 E 4 GLY B 141 ILE B 150 -1 N GLY B 148 O ILE B 122 SHEET 1 F 2 SER B 55 LYS B 57 0 SHEET 2 F 2 LYS B 60 VAL B 62 -1 N VAL B 62 O SER B 55 SHEET 1 G 4 GLY C 101 ALA C 109 0 SHEET 2 G 4 GLY C 27 ASP C 36 -1 N PHE C 30 O VAL C 107 SHEET 3 G 4 LYS C 14 ASN C 24 -1 N ASN C 24 O GLY C 27 SHEET 4 G 4 LEU C 3 LEU C 10 -1 N MET C 7 O VAL C 16 SHEET 1 H 4 GLY C 90 VAL C 97 0 SHEET 2 H 4 GLY C 40 HIS C 47 -1 O GLY C 40 N VAL C 97 SHEET 3 H 4 GLY C 119 GLY C 127 -1 N MET C 123 O HIS C 45 SHEET 4 H 4 GLY C 141 ILE C 150 -1 N GLY C 148 O ILE C 122 SHEET 1 I 2 SER C 55 LYS C 57 0 SHEET 2 I 2 LYS C 60 VAL C 62 -1 N VAL C 62 O SER C 55 SSBOND 1 CYS A 52 CYS A 147 1555 1555 1.99 SSBOND 2 CYS B 52 CYS B 147 1555 1555 1.99 SSBOND 3 CYS C 52 CYS C 147 1555 1555 2.04 LINK ND1 HIS A 45 CU CU A 152 1555 1555 2.00 LINK NE2 HIS A 47 CU CU A 152 1555 1555 2.19 LINK NE2 HIS A 70 CU CU A 152 1555 1555 2.77 LINK ND1 HIS A 70 ZN ZN A 153 1555 1555 1.80 LINK ND1 HIS A 79 ZN ZN A 153 1555 1555 2.07 LINK ND1 HIS A 88 ZN ZN A 153 1555 1555 2.09 LINK OD1 ASP A 91 ZN ZN A 153 1555 1555 1.85 LINK NE2 HIS A 125 CU CU A 152 1555 1555 2.05 LINK ND1 HIS B 45 CU CU B 152 1555 1555 2.02 LINK NE2 HIS B 47 CU CU B 152 1555 1555 2.13 LINK ND1 HIS B 70 ZN ZN B 153 1555 1555 1.96 LINK ND1 HIS B 79 ZN ZN B 153 1555 1555 1.91 LINK ND1 HIS B 88 ZN ZN B 153 1555 1555 2.10 LINK OD1 ASP B 91 ZN ZN B 153 1555 1555 1.77 LINK NE2 HIS B 125 CU CU B 152 1555 1555 2.08 LINK ND1 HIS C 45 CU CU C 152 1555 1555 2.04 LINK NE2 HIS C 47 CU CU C 152 1555 1555 2.14 LINK NE2 HIS C 70 CU CU C 152 1555 1555 2.59 LINK ND1 HIS C 70 ZN ZN C 153 1555 1555 1.80 LINK ND1 HIS C 79 ZN ZN C 153 1555 1555 1.96 LINK ND1 HIS C 88 ZN ZN C 153 1555 1555 2.02 LINK OD1 ASP C 91 ZN ZN C 153 1555 1555 1.90 LINK NE2 HIS C 125 CU CU C 152 1555 1555 2.10 LINK CU CU C 152 O HOH C 154 1555 1555 2.47 CISPEP 1 MET A 134 PRO A 135 0 -1.72 CISPEP 2 MET B 134 PRO B 135 0 -0.44 CISPEP 3 MET C 134 PRO C 135 0 3.77 SITE 1 CU1 4 HIS A 45 HIS A 47 HIS A 70 HIS A 125 SITE 1 CU2 4 HIS B 45 HIS B 47 HIS B 70 HIS B 125 SITE 1 CU3 4 HIS C 45 HIS C 47 HIS C 70 HIS C 125 SITE 1 ZN1 4 HIS A 70 HIS A 79 HIS A 88 ASP A 91 SITE 1 ZN2 4 HIS B 70 HIS B 79 HIS B 88 ASP B 91 SITE 1 ZN3 4 HIS C 70 HIS C 79 HIS C 88 ASP C 91 SITE 1 AC1 5 HIS A 45 HIS A 47 HIS A 70 HIS A 125 SITE 2 AC1 5 HOH A 154 SITE 1 AC2 4 HIS A 70 HIS A 79 HIS A 88 ASP A 91 SITE 1 AC3 4 HIS B 45 HIS B 47 HIS B 70 HIS B 125 SITE 1 AC4 4 HIS B 70 HIS B 79 HIS B 88 ASP B 91 SITE 1 AC5 5 HIS C 45 HIS C 47 HIS C 70 HIS C 125 SITE 2 AC5 5 HOH C 154 SITE 1 AC6 4 HIS C 70 HIS C 79 HIS C 88 ASP C 91 CRYST1 120.700 87.000 43.500 90.00 90.60 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008285 0.000000 0.000087 0.00000 SCALE2 0.000000 0.011494 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022990 0.00000 MTRIX1 1 -0.209690 -0.653980 -0.726870 82.82280 1 MTRIX2 1 -0.626910 -0.480560 0.613230 75.59549 1 MTRIX3 1 -0.750340 0.584270 -0.309220 23.09389 1