data_1YAV # _entry.id 1YAV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YAV pdb_00001yav 10.2210/pdb1yav/pdb RCSB RCSB031322 ? ? WWPDB D_1000031322 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-12-28 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-02-03 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Structure summary' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' audit_author 2 4 'Structure model' struct_ref_seq_dif 3 4 'Structure model' struct_site 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond 6 5 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_audit_author.identifier_ORCID' 2 4 'Structure model' '_struct_ref_seq_dif.details' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' 6 5 'Structure model' '_database_2.pdbx_DOI' 7 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YAV _pdbx_database_status.recvd_initial_deposition_date 2004-12-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type TargetDB T1655 . unspecified TargetDB NYSGXRC-T1655 . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kumaran, D.' 1 ? 'Swaminathan, S.' 2 ? 'Burley, S.K.' 3 0000-0002-2487-9713 'New York SGX Research Center for Structural Genomics (NYSGXRC)' 4 ? # _citation.id primary _citation.title 'Crystal Structure of a hypothetical protein (ykul) containing CBS domains from Bacillus subtilis.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kumaran, D.' 1 ? primary 'Swaminathan, S.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'hypothetical protein BSU14130' 18012.754 2 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 water nat water 18.015 72 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSLISLQSDQLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEF EKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGFVCVENDEQVFEGIFTRRVVLKELNKHIRSLNKEGGSHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MSLISLQSDQLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEF EKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGFVCVENDEQVFEGIFTRRVVLKELNKHIRSLNKEGGSHHHHHH ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier NYSGXRC-T1655 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 LEU n 1 4 ILE n 1 5 SER n 1 6 LEU n 1 7 GLN n 1 8 SER n 1 9 ASP n 1 10 GLN n 1 11 LEU n 1 12 LEU n 1 13 GLU n 1 14 ALA n 1 15 THR n 1 16 VAL n 1 17 GLY n 1 18 GLN n 1 19 PHE n 1 20 MET n 1 21 ILE n 1 22 GLU n 1 23 ALA n 1 24 ASP n 1 25 LYS n 1 26 VAL n 1 27 ALA n 1 28 HIS n 1 29 VAL n 1 30 GLN n 1 31 VAL n 1 32 GLY n 1 33 ASN n 1 34 ASN n 1 35 LEU n 1 36 GLU n 1 37 HIS n 1 38 ALA n 1 39 LEU n 1 40 LEU n 1 41 VAL n 1 42 LEU n 1 43 THR n 1 44 LYS n 1 45 THR n 1 46 GLY n 1 47 TYR n 1 48 THR n 1 49 ALA n 1 50 ILE n 1 51 PRO n 1 52 VAL n 1 53 LEU n 1 54 ASP n 1 55 PRO n 1 56 SER n 1 57 TYR n 1 58 ARG n 1 59 LEU n 1 60 HIS n 1 61 GLY n 1 62 LEU n 1 63 ILE n 1 64 GLY n 1 65 THR n 1 66 ASN n 1 67 MET n 1 68 ILE n 1 69 MET n 1 70 ASN n 1 71 SER n 1 72 ILE n 1 73 PHE n 1 74 GLY n 1 75 LEU n 1 76 GLU n 1 77 ARG n 1 78 ILE n 1 79 GLU n 1 80 PHE n 1 81 GLU n 1 82 LYS n 1 83 LEU n 1 84 ASP n 1 85 GLN n 1 86 ILE n 1 87 THR n 1 88 VAL n 1 89 GLU n 1 90 GLU n 1 91 VAL n 1 92 MET n 1 93 LEU n 1 94 THR n 1 95 ASP n 1 96 ILE n 1 97 PRO n 1 98 ARG n 1 99 LEU n 1 100 HIS n 1 101 ILE n 1 102 ASN n 1 103 ASP n 1 104 PRO n 1 105 ILE n 1 106 MET n 1 107 LYS n 1 108 GLY n 1 109 PHE n 1 110 GLY n 1 111 MET n 1 112 VAL n 1 113 ILE n 1 114 ASN n 1 115 ASN n 1 116 GLY n 1 117 PHE n 1 118 VAL n 1 119 CYS n 1 120 VAL n 1 121 GLU n 1 122 ASN n 1 123 ASP n 1 124 GLU n 1 125 GLN n 1 126 VAL n 1 127 PHE n 1 128 GLU n 1 129 GLY n 1 130 ILE n 1 131 PHE n 1 132 THR n 1 133 ARG n 1 134 ARG n 1 135 VAL n 1 136 VAL n 1 137 LEU n 1 138 LYS n 1 139 GLU n 1 140 LEU n 1 141 ASN n 1 142 LYS n 1 143 HIS n 1 144 ILE n 1 145 ARG n 1 146 SER n 1 147 LEU n 1 148 ASN n 1 149 LYS n 1 150 GLU n 1 151 GLY n 1 152 GLY n 1 153 SER n 1 154 HIS n 1 155 HIS n 1 156 HIS n 1 157 HIS n 1 158 HIS n 1 159 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Bacillus _entity_src_gen.pdbx_gene_src_gene ykuL _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus subtilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1423 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 LEU 3 3 ? ? ? A . n A 1 4 ILE 4 4 ? ? ? A . n A 1 5 SER 5 5 ? ? ? A . n A 1 6 LEU 6 6 ? ? ? A . n A 1 7 GLN 7 7 ? ? ? A . n A 1 8 SER 8 8 ? ? ? A . n A 1 9 ASP 9 9 ? ? ? A . n A 1 10 GLN 10 10 ? ? ? A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 MET 20 20 20 MET MET A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 HIS 28 28 28 HIS HIS A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 GLN 30 30 30 GLN GLN A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 HIS 37 37 37 HIS HIS A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 TYR 47 47 47 TYR TYR A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 PRO 51 51 51 PRO PRO A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 PRO 55 55 55 PRO PRO A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 TYR 57 57 57 TYR TYR A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 HIS 60 60 60 HIS HIS A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 THR 65 65 65 THR THR A . n A 1 66 ASN 66 66 66 ASN ASN A . n A 1 67 MET 67 67 67 MET MET A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 MET 69 69 69 MET MET A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 PHE 73 73 73 PHE PHE A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 PHE 80 80 80 PHE PHE A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 LYS 82 82 82 LYS LYS A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 ASP 84 84 84 ASP ASP A . n A 1 85 GLN 85 85 85 GLN GLN A . n A 1 86 ILE 86 86 86 ILE ILE A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 MET 92 92 92 MET MET A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 ASP 95 95 95 ASP ASP A . n A 1 96 ILE 96 96 96 ILE ILE A . n A 1 97 PRO 97 97 97 PRO PRO A . n A 1 98 ARG 98 98 98 ARG ARG A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 HIS 100 100 100 HIS HIS A . n A 1 101 ILE 101 101 101 ILE ILE A . n A 1 102 ASN 102 102 102 ASN ASN A . n A 1 103 ASP 103 103 103 ASP ASP A . n A 1 104 PRO 104 104 104 PRO PRO A . n A 1 105 ILE 105 105 105 ILE ILE A . n A 1 106 MET 106 106 106 MET MET A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 PHE 109 109 109 PHE PHE A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 MET 111 111 111 MET MET A . n A 1 112 VAL 112 112 112 VAL VAL A . n A 1 113 ILE 113 113 113 ILE ILE A . n A 1 114 ASN 114 114 114 ASN ASN A . n A 1 115 ASN 115 115 115 ASN ASN A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 PHE 117 117 117 PHE PHE A . n A 1 118 VAL 118 118 118 VAL VAL A . n A 1 119 CYS 119 119 119 CYS CYS A . n A 1 120 VAL 120 120 120 VAL VAL A . n A 1 121 GLU 121 121 121 GLU GLU A . n A 1 122 ASN 122 122 122 ASN ASN A . n A 1 123 ASP 123 123 123 ASP ASP A . n A 1 124 GLU 124 124 124 GLU GLU A . n A 1 125 GLN 125 125 125 GLN GLN A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 PHE 127 127 127 PHE PHE A . n A 1 128 GLU 128 128 128 GLU GLU A . n A 1 129 GLY 129 129 129 GLY GLY A . n A 1 130 ILE 130 130 130 ILE ILE A . n A 1 131 PHE 131 131 131 PHE PHE A . n A 1 132 THR 132 132 132 THR THR A . n A 1 133 ARG 133 133 133 ARG ARG A . n A 1 134 ARG 134 134 134 ARG ARG A . n A 1 135 VAL 135 135 135 VAL VAL A . n A 1 136 VAL 136 136 136 VAL VAL A . n A 1 137 LEU 137 137 137 LEU LEU A . n A 1 138 LYS 138 138 138 LYS LYS A . n A 1 139 GLU 139 139 139 GLU GLU A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 ASN 141 141 141 ASN ASN A . n A 1 142 LYS 142 142 142 LYS LYS A . n A 1 143 HIS 143 143 143 HIS HIS A . n A 1 144 ILE 144 144 144 ILE ILE A . n A 1 145 ARG 145 145 ? ? ? A . n A 1 146 SER 146 146 ? ? ? A . n A 1 147 LEU 147 147 ? ? ? A . n A 1 148 ASN 148 148 ? ? ? A . n A 1 149 LYS 149 149 ? ? ? A . n A 1 150 GLU 150 150 ? ? ? A . n A 1 151 GLY 151 151 ? ? ? A . n A 1 152 GLY 152 152 ? ? ? A . n A 1 153 SER 153 153 ? ? ? A . n A 1 154 HIS 154 154 ? ? ? A . n A 1 155 HIS 155 155 ? ? ? A . n A 1 156 HIS 156 156 ? ? ? A . n A 1 157 HIS 157 157 ? ? ? A . n A 1 158 HIS 158 158 ? ? ? A . n A 1 159 HIS 159 159 ? ? ? A . n B 1 1 MET 1 1 ? ? ? B . n B 1 2 SER 2 2 ? ? ? B . n B 1 3 LEU 3 3 ? ? ? B . n B 1 4 ILE 4 4 ? ? ? B . n B 1 5 SER 5 5 ? ? ? B . n B 1 6 LEU 6 6 ? ? ? B . n B 1 7 GLN 7 7 ? ? ? B . n B 1 8 SER 8 8 ? ? ? B . n B 1 9 ASP 9 9 ? ? ? B . n B 1 10 GLN 10 10 ? ? ? B . n B 1 11 LEU 11 11 ? ? ? B . n B 1 12 LEU 12 12 ? ? ? B . n B 1 13 GLU 13 13 13 GLU GLU B . n B 1 14 ALA 14 14 14 ALA ALA B . n B 1 15 THR 15 15 15 THR THR B . n B 1 16 VAL 16 16 16 VAL VAL B . n B 1 17 GLY 17 17 17 GLY GLY B . n B 1 18 GLN 18 18 18 GLN GLN B . n B 1 19 PHE 19 19 19 PHE PHE B . n B 1 20 MET 20 20 20 MET MET B . n B 1 21 ILE 21 21 21 ILE ILE B . n B 1 22 GLU 22 22 22 GLU GLU B . n B 1 23 ALA 23 23 23 ALA ALA B . n B 1 24 ASP 24 24 24 ASP ASP B . n B 1 25 LYS 25 25 25 LYS LYS B . n B 1 26 VAL 26 26 26 VAL VAL B . n B 1 27 ALA 27 27 27 ALA ALA B . n B 1 28 HIS 28 28 28 HIS HIS B . n B 1 29 VAL 29 29 29 VAL VAL B . n B 1 30 GLN 30 30 30 GLN GLN B . n B 1 31 VAL 31 31 31 VAL VAL B . n B 1 32 GLY 32 32 32 GLY GLY B . n B 1 33 ASN 33 33 33 ASN ASN B . n B 1 34 ASN 34 34 34 ASN ASN B . n B 1 35 LEU 35 35 35 LEU LEU B . n B 1 36 GLU 36 36 36 GLU GLU B . n B 1 37 HIS 37 37 37 HIS HIS B . n B 1 38 ALA 38 38 38 ALA ALA B . n B 1 39 LEU 39 39 39 LEU LEU B . n B 1 40 LEU 40 40 40 LEU LEU B . n B 1 41 VAL 41 41 41 VAL VAL B . n B 1 42 LEU 42 42 42 LEU LEU B . n B 1 43 THR 43 43 43 THR THR B . n B 1 44 LYS 44 44 44 LYS LYS B . n B 1 45 THR 45 45 45 THR THR B . n B 1 46 GLY 46 46 46 GLY GLY B . n B 1 47 TYR 47 47 47 TYR TYR B . n B 1 48 THR 48 48 48 THR THR B . n B 1 49 ALA 49 49 49 ALA ALA B . n B 1 50 ILE 50 50 50 ILE ILE B . n B 1 51 PRO 51 51 51 PRO PRO B . n B 1 52 VAL 52 52 52 VAL VAL B . n B 1 53 LEU 53 53 53 LEU LEU B . n B 1 54 ASP 54 54 54 ASP ASP B . n B 1 55 PRO 55 55 55 PRO PRO B . n B 1 56 SER 56 56 56 SER SER B . n B 1 57 TYR 57 57 57 TYR TYR B . n B 1 58 ARG 58 58 58 ARG ARG B . n B 1 59 LEU 59 59 59 LEU LEU B . n B 1 60 HIS 60 60 60 HIS HIS B . n B 1 61 GLY 61 61 61 GLY GLY B . n B 1 62 LEU 62 62 62 LEU LEU B . n B 1 63 ILE 63 63 63 ILE ILE B . n B 1 64 GLY 64 64 64 GLY GLY B . n B 1 65 THR 65 65 65 THR THR B . n B 1 66 ASN 66 66 66 ASN ASN B . n B 1 67 MET 67 67 67 MET MET B . n B 1 68 ILE 68 68 68 ILE ILE B . n B 1 69 MET 69 69 69 MET MET B . n B 1 70 ASN 70 70 70 ASN ASN B . n B 1 71 SER 71 71 71 SER SER B . n B 1 72 ILE 72 72 72 ILE ILE B . n B 1 73 PHE 73 73 73 PHE PHE B . n B 1 74 GLY 74 74 74 GLY GLY B . n B 1 75 LEU 75 75 75 LEU LEU B . n B 1 76 GLU 76 76 76 GLU GLU B . n B 1 77 ARG 77 77 77 ARG ARG B . n B 1 78 ILE 78 78 78 ILE ILE B . n B 1 79 GLU 79 79 79 GLU GLU B . n B 1 80 PHE 80 80 80 PHE PHE B . n B 1 81 GLU 81 81 81 GLU GLU B . n B 1 82 LYS 82 82 82 LYS LYS B . n B 1 83 LEU 83 83 83 LEU LEU B . n B 1 84 ASP 84 84 84 ASP ASP B . n B 1 85 GLN 85 85 85 GLN GLN B . n B 1 86 ILE 86 86 86 ILE ILE B . n B 1 87 THR 87 87 87 THR THR B . n B 1 88 VAL 88 88 88 VAL VAL B . n B 1 89 GLU 89 89 89 GLU GLU B . n B 1 90 GLU 90 90 90 GLU GLU B . n B 1 91 VAL 91 91 91 VAL VAL B . n B 1 92 MET 92 92 92 MET MET B . n B 1 93 LEU 93 93 93 LEU LEU B . n B 1 94 THR 94 94 94 THR THR B . n B 1 95 ASP 95 95 95 ASP ASP B . n B 1 96 ILE 96 96 96 ILE ILE B . n B 1 97 PRO 97 97 97 PRO PRO B . n B 1 98 ARG 98 98 98 ARG ARG B . n B 1 99 LEU 99 99 99 LEU LEU B . n B 1 100 HIS 100 100 100 HIS HIS B . n B 1 101 ILE 101 101 101 ILE ILE B . n B 1 102 ASN 102 102 102 ASN ASN B . n B 1 103 ASP 103 103 103 ASP ASP B . n B 1 104 PRO 104 104 104 PRO PRO B . n B 1 105 ILE 105 105 105 ILE ILE B . n B 1 106 MET 106 106 106 MET MET B . n B 1 107 LYS 107 107 107 LYS LYS B . n B 1 108 GLY 108 108 108 GLY GLY B . n B 1 109 PHE 109 109 109 PHE PHE B . n B 1 110 GLY 110 110 110 GLY GLY B . n B 1 111 MET 111 111 111 MET MET B . n B 1 112 VAL 112 112 112 VAL VAL B . n B 1 113 ILE 113 113 113 ILE ILE B . n B 1 114 ASN 114 114 114 ASN ASN B . n B 1 115 ASN 115 115 115 ASN ASN B . n B 1 116 GLY 116 116 116 GLY GLY B . n B 1 117 PHE 117 117 117 PHE PHE B . n B 1 118 VAL 118 118 118 VAL VAL B . n B 1 119 CYS 119 119 119 CYS CYS B . n B 1 120 VAL 120 120 120 VAL VAL B . n B 1 121 GLU 121 121 121 GLU GLU B . n B 1 122 ASN 122 122 122 ASN ASN B . n B 1 123 ASP 123 123 123 ASP ASP B . n B 1 124 GLU 124 124 124 GLU GLU B . n B 1 125 GLN 125 125 125 GLN GLN B . n B 1 126 VAL 126 126 126 VAL VAL B . n B 1 127 PHE 127 127 127 PHE PHE B . n B 1 128 GLU 128 128 128 GLU GLU B . n B 1 129 GLY 129 129 129 GLY GLY B . n B 1 130 ILE 130 130 130 ILE ILE B . n B 1 131 PHE 131 131 131 PHE PHE B . n B 1 132 THR 132 132 132 THR THR B . n B 1 133 ARG 133 133 133 ARG ARG B . n B 1 134 ARG 134 134 134 ARG ARG B . n B 1 135 VAL 135 135 135 VAL VAL B . n B 1 136 VAL 136 136 136 VAL VAL B . n B 1 137 LEU 137 137 137 LEU LEU B . n B 1 138 LYS 138 138 138 LYS LYS B . n B 1 139 GLU 139 139 139 GLU GLU B . n B 1 140 LEU 140 140 140 LEU LEU B . n B 1 141 ASN 141 141 141 ASN ASN B . n B 1 142 LYS 142 142 142 LYS LYS B . n B 1 143 HIS 143 143 143 HIS HIS B . n B 1 144 ILE 144 144 144 ILE ILE B . n B 1 145 ARG 145 145 145 ARG ARG B . n B 1 146 SER 146 146 146 SER SER B . n B 1 147 LEU 147 147 147 LEU LEU B . n B 1 148 ASN 148 148 ? ? ? B . n B 1 149 LYS 149 149 ? ? ? B . n B 1 150 GLU 150 150 ? ? ? B . n B 1 151 GLY 151 151 ? ? ? B . n B 1 152 GLY 152 152 ? ? ? B . n B 1 153 SER 153 153 ? ? ? B . n B 1 154 HIS 154 154 ? ? ? B . n B 1 155 HIS 155 155 ? ? ? B . n B 1 156 HIS 156 156 ? ? ? B . n B 1 157 HIS 157 157 ? ? ? B . n B 1 158 HIS 158 158 ? ? ? B . n B 1 159 HIS 159 159 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 1 202 202 SO4 SO4 B . D 3 HOH 1 160 2 HOH TIP A . D 3 HOH 2 161 5 HOH TIP A . D 3 HOH 3 162 6 HOH TIP A . D 3 HOH 4 163 7 HOH TIP A . D 3 HOH 5 164 15 HOH TIP A . D 3 HOH 6 165 16 HOH TIP A . D 3 HOH 7 166 17 HOH TIP A . D 3 HOH 8 167 18 HOH TIP A . D 3 HOH 9 168 19 HOH TIP A . D 3 HOH 10 169 20 HOH TIP A . D 3 HOH 11 170 23 HOH TIP A . D 3 HOH 12 171 24 HOH TIP A . D 3 HOH 13 172 25 HOH TIP A . D 3 HOH 14 173 32 HOH TIP A . D 3 HOH 15 174 34 HOH TIP A . D 3 HOH 16 175 38 HOH TIP A . D 3 HOH 17 176 39 HOH TIP A . D 3 HOH 18 177 40 HOH TIP A . D 3 HOH 19 178 42 HOH TIP A . D 3 HOH 20 179 43 HOH TIP A . D 3 HOH 21 180 44 HOH TIP A . D 3 HOH 22 181 45 HOH TIP A . D 3 HOH 23 182 46 HOH TIP A . D 3 HOH 24 183 47 HOH TIP A . D 3 HOH 25 184 48 HOH TIP A . D 3 HOH 26 185 50 HOH TIP A . D 3 HOH 27 186 52 HOH TIP A . D 3 HOH 28 187 54 HOH TIP A . D 3 HOH 29 188 55 HOH TIP A . D 3 HOH 30 189 56 HOH TIP A . D 3 HOH 31 190 60 HOH TIP A . D 3 HOH 32 191 61 HOH TIP A . D 3 HOH 33 192 62 HOH TIP A . D 3 HOH 34 193 63 HOH TIP A . D 3 HOH 35 194 65 HOH TIP A . D 3 HOH 36 195 67 HOH TIP A . D 3 HOH 37 196 69 HOH TIP A . D 3 HOH 38 197 70 HOH TIP A . E 3 HOH 1 203 1 HOH TIP B . E 3 HOH 2 204 3 HOH TIP B . E 3 HOH 3 205 4 HOH TIP B . E 3 HOH 4 206 8 HOH TIP B . E 3 HOH 5 207 9 HOH TIP B . E 3 HOH 6 208 10 HOH TIP B . E 3 HOH 7 209 11 HOH TIP B . E 3 HOH 8 210 12 HOH TIP B . E 3 HOH 9 211 13 HOH TIP B . E 3 HOH 10 212 14 HOH TIP B . E 3 HOH 11 213 21 HOH TIP B . E 3 HOH 12 214 22 HOH TIP B . E 3 HOH 13 215 26 HOH TIP B . E 3 HOH 14 216 27 HOH TIP B . E 3 HOH 15 217 28 HOH TIP B . E 3 HOH 16 218 29 HOH TIP B . E 3 HOH 17 219 30 HOH TIP B . E 3 HOH 18 220 31 HOH TIP B . E 3 HOH 19 221 33 HOH TIP B . E 3 HOH 20 222 35 HOH TIP B . E 3 HOH 21 223 36 HOH TIP B . E 3 HOH 22 224 37 HOH TIP B . E 3 HOH 23 225 41 HOH TIP B . E 3 HOH 24 226 49 HOH TIP B . E 3 HOH 25 227 51 HOH TIP B . E 3 HOH 26 228 53 HOH TIP B . E 3 HOH 27 229 57 HOH TIP B . E 3 HOH 28 230 58 HOH TIP B . E 3 HOH 29 231 59 HOH TIP B . E 3 HOH 30 232 64 HOH TIP B . E 3 HOH 31 233 66 HOH TIP B . E 3 HOH 32 234 68 HOH TIP B . E 3 HOH 33 235 71 HOH TIP B . E 3 HOH 34 236 72 HOH TIP B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 CBASS 'data collection' . ? 2 HKL-2000 'data scaling' . ? 3 SOLVE phasing . ? 4 SHARP phasing . ? 5 ARP/wARP 'model building' . ? 6 # _cell.entry_id 1YAV _cell.length_a 60.564 _cell.length_b 69.592 _cell.length_c 70.903 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1YAV _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1YAV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.1 _exptl_crystal.density_percent_sol 40.4 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'Ammonium sulfate, Hepes, Xylitol, KCl, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'BRANDEIS - B4' _diffrn_detector.pdbx_collection_date 2004-06-12 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.7 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.7 # _reflns.entry_id 1YAV _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.1 _reflns.number_obs 17293 _reflns.number_all 17293 _reflns.percent_possible_obs 95.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.063 _reflns.pdbx_netI_over_sigmaI 16.1 _reflns.B_iso_Wilson_estimate 25.1 _reflns.pdbx_redundancy 41.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.1 _reflns_shell.d_res_low 2.18 _reflns_shell.percent_possible_all 67.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.457 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 17.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1207 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1YAV _refine.ls_number_reflns_obs 17062 _refine.ls_number_reflns_all 17062 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 400881.13 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 38.41 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 94.4 _refine.ls_R_factor_obs 0.228 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.228 _refine.ls_R_factor_R_free 0.262 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 6.9 _refine.ls_number_reflns_R_free 1173 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 36.1 _refine.aniso_B[1][1] 0.63 _refine.aniso_B[2][2] 1.52 _refine.aniso_B[3][3] -2.15 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.391109 _refine.solvent_model_param_bsol 43.6304 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'Sulfur SAD' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1YAV _refine_analyze.Luzzati_coordinate_error_obs 0.27 _refine_analyze.Luzzati_sigma_a_obs 0.18 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.32 _refine_analyze.Luzzati_sigma_a_free 0.23 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2131 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 72 _refine_hist.number_atoms_total 2208 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 38.41 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.3 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.75 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.10 _refine_ls_shell.d_res_low 2.23 _refine_ls_shell.number_reflns_R_work 1988 _refine_ls_shell.R_factor_R_work 0.268 _refine_ls_shell.percent_reflns_obs 71.8 _refine_ls_shell.R_factor_R_free 0.317 _refine_ls_shell.R_factor_R_free_error 0.027 _refine_ls_shell.percent_reflns_R_free 6.6 _refine_ls_shell.number_reflns_R_free 141 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1YAV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1YAV _struct.title 'Crystal structure of CBS domain-containing protein ykuL from Bacillus subtilis' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YAV _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;Cystathionine beta synthase (CBS) domain, Structural Genomics, Protein Structure Initiative, PSI, New York SGX Research Center for Structural Genomics, NYSGXRC, T1655, Sulfur SAD Technique, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code O31698_BACSU _struct_ref.pdbx_db_accession O31698 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SLQSDQLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLD QITVEEVMLTDIPRLHINDPIMKGFGMVINNGFVCVENDEQVFEGIFTRRVVLKELNKHIRSLNK ; _struct_ref.pdbx_align_begin 3 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1YAV A 5 ? 149 ? O31698 3 ? 147 ? 5 149 2 1 1YAV B 5 ? 149 ? O31698 3 ? 147 ? 5 149 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1YAV MET A 1 ? UNP O31698 ? ? 'cloning artifact' 1 1 1 1YAV SER A 2 ? UNP O31698 ? ? 'cloning artifact' 2 2 1 1YAV LEU A 3 ? UNP O31698 ? ? 'cloning artifact' 3 3 1 1YAV ILE A 4 ? UNP O31698 ? ? 'cloning artifact' 4 4 1 1YAV GLU A 150 ? UNP O31698 ? ? 'expression tag' 150 5 1 1YAV GLY A 151 ? UNP O31698 ? ? 'expression tag' 151 6 1 1YAV GLY A 152 ? UNP O31698 ? ? 'expression tag' 152 7 1 1YAV SER A 153 ? UNP O31698 ? ? 'expression tag' 153 8 1 1YAV HIS A 154 ? UNP O31698 ? ? 'expression tag' 154 9 1 1YAV HIS A 155 ? UNP O31698 ? ? 'expression tag' 155 10 1 1YAV HIS A 156 ? UNP O31698 ? ? 'expression tag' 156 11 1 1YAV HIS A 157 ? UNP O31698 ? ? 'expression tag' 157 12 1 1YAV HIS A 158 ? UNP O31698 ? ? 'expression tag' 158 13 1 1YAV HIS A 159 ? UNP O31698 ? ? 'expression tag' 159 14 2 1YAV MET B 1 ? UNP O31698 ? ? 'cloning artifact' 1 15 2 1YAV SER B 2 ? UNP O31698 ? ? 'cloning artifact' 2 16 2 1YAV LEU B 3 ? UNP O31698 ? ? 'cloning artifact' 3 17 2 1YAV ILE B 4 ? UNP O31698 ? ? 'cloning artifact' 4 18 2 1YAV GLU B 150 ? UNP O31698 ? ? 'expression tag' 150 19 2 1YAV GLY B 151 ? UNP O31698 ? ? 'expression tag' 151 20 2 1YAV GLY B 152 ? UNP O31698 ? ? 'expression tag' 152 21 2 1YAV SER B 153 ? UNP O31698 ? ? 'expression tag' 153 22 2 1YAV HIS B 154 ? UNP O31698 ? ? 'expression tag' 154 23 2 1YAV HIS B 155 ? UNP O31698 ? ? 'expression tag' 155 24 2 1YAV HIS B 156 ? UNP O31698 ? ? 'expression tag' 156 25 2 1YAV HIS B 157 ? UNP O31698 ? ? 'expression tag' 157 26 2 1YAV HIS B 158 ? UNP O31698 ? ? 'expression tag' 158 27 2 1YAV HIS B 159 ? UNP O31698 ? ? 'expression tag' 159 28 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2930 ? 1 MORE -37 ? 1 'SSA (A^2)' 13480 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 15 ? MET A 20 ? THR A 15 MET A 20 1 ? 6 HELX_P HELX_P2 2 ASP A 24 ? VAL A 26 ? ASP A 24 VAL A 26 5 ? 3 HELX_P HELX_P3 3 ASN A 34 ? GLY A 46 ? ASN A 34 GLY A 46 1 ? 13 HELX_P HELX_P4 4 THR A 65 ? PHE A 73 ? THR A 65 PHE A 73 1 ? 9 HELX_P HELX_P5 5 GLU A 79 ? LEU A 83 ? GLU A 79 LEU A 83 5 ? 5 HELX_P HELX_P6 6 THR A 87 ? MET A 92 ? THR A 87 MET A 92 1 ? 6 HELX_P HELX_P7 7 PRO A 104 ? VAL A 112 ? PRO A 104 VAL A 112 1 ? 9 HELX_P HELX_P8 8 ARG A 133 ? ILE A 144 ? ARG A 133 ILE A 144 1 ? 12 HELX_P HELX_P9 9 THR B 15 ? MET B 20 ? THR B 15 MET B 20 1 ? 6 HELX_P HELX_P10 10 ASP B 24 ? VAL B 26 ? ASP B 24 VAL B 26 5 ? 3 HELX_P HELX_P11 11 ASN B 34 ? GLY B 46 ? ASN B 34 GLY B 46 1 ? 13 HELX_P HELX_P12 12 THR B 65 ? PHE B 73 ? THR B 65 PHE B 73 1 ? 9 HELX_P HELX_P13 13 GLU B 79 ? ILE B 86 ? GLU B 79 ILE B 86 5 ? 8 HELX_P HELX_P14 14 THR B 87 ? MET B 92 ? THR B 87 MET B 92 1 ? 6 HELX_P HELX_P15 15 PRO B 104 ? ILE B 113 ? PRO B 104 ILE B 113 1 ? 10 HELX_P HELX_P16 16 ARG B 133 ? SER B 146 ? ARG B 133 SER B 146 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? C ? 4 ? D ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel B 1 2 ? parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? parallel D 1 2 ? parallel D 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 21 ? GLU A 22 ? ILE A 21 GLU A 22 A 2 PHE A 127 ? THR A 132 ? PHE A 127 THR A 132 A 3 PHE A 117 ? GLU A 121 ? PHE A 117 GLU A 121 A 4 ARG A 98 ? HIS A 100 ? ARG A 98 HIS A 100 B 1 VAL A 29 ? GLN A 30 ? VAL A 29 GLN A 30 B 2 ALA A 49 ? LEU A 53 ? ALA A 49 LEU A 53 B 3 LEU A 59 ? GLY A 64 ? LEU A 59 GLY A 64 C 1 ILE B 21 ? GLU B 22 ? ILE B 21 GLU B 22 C 2 PHE B 127 ? THR B 132 ? PHE B 127 THR B 132 C 3 PHE B 117 ? GLU B 121 ? PHE B 117 GLU B 121 C 4 ARG B 98 ? HIS B 100 ? ARG B 98 HIS B 100 D 1 VAL B 29 ? GLN B 30 ? VAL B 29 GLN B 30 D 2 ALA B 49 ? LEU B 53 ? ALA B 49 LEU B 53 D 3 LEU B 59 ? GLY B 64 ? LEU B 59 GLY B 64 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 21 ? N ILE A 21 O ILE A 130 ? O ILE A 130 A 2 3 O PHE A 131 ? O PHE A 131 N VAL A 118 ? N VAL A 118 A 3 4 O GLU A 121 ? O GLU A 121 N LEU A 99 ? N LEU A 99 B 1 2 N VAL A 29 ? N VAL A 29 O LEU A 53 ? O LEU A 53 B 2 3 N VAL A 52 ? N VAL A 52 O HIS A 60 ? O HIS A 60 C 1 2 N ILE B 21 ? N ILE B 21 O ILE B 130 ? O ILE B 130 C 2 3 O GLY B 129 ? O GLY B 129 N VAL B 120 ? N VAL B 120 C 3 4 O CYS B 119 ? O CYS B 119 N LEU B 99 ? N LEU B 99 D 1 2 N VAL B 29 ? N VAL B 29 O LEU B 53 ? O LEU B 53 D 2 3 N VAL B 52 ? N VAL B 52 O HIS B 60 ? O HIS B 60 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id SO4 _struct_site.pdbx_auth_seq_id 202 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 2 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 B 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 ARG A 134 ? ARG A 134 . ? 1_555 ? 2 AC1 2 ARG B 133 ? ARG B 133 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 122 ? ? -111.76 -167.34 2 1 MET B 92 ? ? -49.31 153.92 3 1 ILE B 101 ? ? -58.52 1.92 # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'New York SGX Research Center for Structural Genomics' _pdbx_SG_project.initial_of_center NYSGXRC _pdbx_SG_project.id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A LEU 3 ? A LEU 3 4 1 Y 1 A ILE 4 ? A ILE 4 5 1 Y 1 A SER 5 ? A SER 5 6 1 Y 1 A LEU 6 ? A LEU 6 7 1 Y 1 A GLN 7 ? A GLN 7 8 1 Y 1 A SER 8 ? A SER 8 9 1 Y 1 A ASP 9 ? A ASP 9 10 1 Y 1 A GLN 10 ? A GLN 10 11 1 Y 1 A ARG 145 ? A ARG 145 12 1 Y 1 A SER 146 ? A SER 146 13 1 Y 1 A LEU 147 ? A LEU 147 14 1 Y 1 A ASN 148 ? A ASN 148 15 1 Y 1 A LYS 149 ? A LYS 149 16 1 Y 1 A GLU 150 ? A GLU 150 17 1 Y 1 A GLY 151 ? A GLY 151 18 1 Y 1 A GLY 152 ? A GLY 152 19 1 Y 1 A SER 153 ? A SER 153 20 1 Y 1 A HIS 154 ? A HIS 154 21 1 Y 1 A HIS 155 ? A HIS 155 22 1 Y 1 A HIS 156 ? A HIS 156 23 1 Y 1 A HIS 157 ? A HIS 157 24 1 Y 1 A HIS 158 ? A HIS 158 25 1 Y 1 A HIS 159 ? A HIS 159 26 1 Y 1 B MET 1 ? B MET 1 27 1 Y 1 B SER 2 ? B SER 2 28 1 Y 1 B LEU 3 ? B LEU 3 29 1 Y 1 B ILE 4 ? B ILE 4 30 1 Y 1 B SER 5 ? B SER 5 31 1 Y 1 B LEU 6 ? B LEU 6 32 1 Y 1 B GLN 7 ? B GLN 7 33 1 Y 1 B SER 8 ? B SER 8 34 1 Y 1 B ASP 9 ? B ASP 9 35 1 Y 1 B GLN 10 ? B GLN 10 36 1 Y 1 B LEU 11 ? B LEU 11 37 1 Y 1 B LEU 12 ? B LEU 12 38 1 Y 1 B ASN 148 ? B ASN 148 39 1 Y 1 B LYS 149 ? B LYS 149 40 1 Y 1 B GLU 150 ? B GLU 150 41 1 Y 1 B GLY 151 ? B GLY 151 42 1 Y 1 B GLY 152 ? B GLY 152 43 1 Y 1 B SER 153 ? B SER 153 44 1 Y 1 B HIS 154 ? B HIS 154 45 1 Y 1 B HIS 155 ? B HIS 155 46 1 Y 1 B HIS 156 ? B HIS 156 47 1 Y 1 B HIS 157 ? B HIS 157 48 1 Y 1 B HIS 158 ? B HIS 158 49 1 Y 1 B HIS 159 ? B HIS 159 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 SO4 S S N N 304 SO4 O1 O N N 305 SO4 O2 O N N 306 SO4 O3 O N N 307 SO4 O4 O N N 308 THR N N N N 309 THR CA C N S 310 THR C C N N 311 THR O O N N 312 THR CB C N R 313 THR OG1 O N N 314 THR CG2 C N N 315 THR OXT O N N 316 THR H H N N 317 THR H2 H N N 318 THR HA H N N 319 THR HB H N N 320 THR HG1 H N N 321 THR HG21 H N N 322 THR HG22 H N N 323 THR HG23 H N N 324 THR HXT H N N 325 TYR N N N N 326 TYR CA C N S 327 TYR C C N N 328 TYR O O N N 329 TYR CB C N N 330 TYR CG C Y N 331 TYR CD1 C Y N 332 TYR CD2 C Y N 333 TYR CE1 C Y N 334 TYR CE2 C Y N 335 TYR CZ C Y N 336 TYR OH O N N 337 TYR OXT O N N 338 TYR H H N N 339 TYR H2 H N N 340 TYR HA H N N 341 TYR HB2 H N N 342 TYR HB3 H N N 343 TYR HD1 H N N 344 TYR HD2 H N N 345 TYR HE1 H N N 346 TYR HE2 H N N 347 TYR HH H N N 348 TYR HXT H N N 349 VAL N N N N 350 VAL CA C N S 351 VAL C C N N 352 VAL O O N N 353 VAL CB C N N 354 VAL CG1 C N N 355 VAL CG2 C N N 356 VAL OXT O N N 357 VAL H H N N 358 VAL H2 H N N 359 VAL HA H N N 360 VAL HB H N N 361 VAL HG11 H N N 362 VAL HG12 H N N 363 VAL HG13 H N N 364 VAL HG21 H N N 365 VAL HG22 H N N 366 VAL HG23 H N N 367 VAL HXT H N N 368 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 SO4 S O1 doub N N 290 SO4 S O2 doub N N 291 SO4 S O3 sing N N 292 SO4 S O4 sing N N 293 THR N CA sing N N 294 THR N H sing N N 295 THR N H2 sing N N 296 THR CA C sing N N 297 THR CA CB sing N N 298 THR CA HA sing N N 299 THR C O doub N N 300 THR C OXT sing N N 301 THR CB OG1 sing N N 302 THR CB CG2 sing N N 303 THR CB HB sing N N 304 THR OG1 HG1 sing N N 305 THR CG2 HG21 sing N N 306 THR CG2 HG22 sing N N 307 THR CG2 HG23 sing N N 308 THR OXT HXT sing N N 309 TYR N CA sing N N 310 TYR N H sing N N 311 TYR N H2 sing N N 312 TYR CA C sing N N 313 TYR CA CB sing N N 314 TYR CA HA sing N N 315 TYR C O doub N N 316 TYR C OXT sing N N 317 TYR CB CG sing N N 318 TYR CB HB2 sing N N 319 TYR CB HB3 sing N N 320 TYR CG CD1 doub Y N 321 TYR CG CD2 sing Y N 322 TYR CD1 CE1 sing Y N 323 TYR CD1 HD1 sing N N 324 TYR CD2 CE2 doub Y N 325 TYR CD2 HD2 sing N N 326 TYR CE1 CZ doub Y N 327 TYR CE1 HE1 sing N N 328 TYR CE2 CZ sing Y N 329 TYR CE2 HE2 sing N N 330 TYR CZ OH sing N N 331 TYR OH HH sing N N 332 TYR OXT HXT sing N N 333 VAL N CA sing N N 334 VAL N H sing N N 335 VAL N H2 sing N N 336 VAL CA C sing N N 337 VAL CA CB sing N N 338 VAL CA HA sing N N 339 VAL C O doub N N 340 VAL C OXT sing N N 341 VAL CB CG1 sing N N 342 VAL CB CG2 sing N N 343 VAL CB HB sing N N 344 VAL CG1 HG11 sing N N 345 VAL CG1 HG12 sing N N 346 VAL CG1 HG13 sing N N 347 VAL CG2 HG21 sing N N 348 VAL CG2 HG22 sing N N 349 VAL CG2 HG23 sing N N 350 VAL OXT HXT sing N N 351 # _atom_sites.entry_id 1YAV _atom_sites.fract_transf_matrix[1][1] 0.016511 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014369 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014104 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_