HEADER TRANSFERASE 20-DEC-04 1YBE TITLE CRYSTAL STRUCTURE OF A NICOTINATE PHOSPHORIBOSYLTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICOTINATE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NAPRTASE; COMPND 5 EC: 2.4.2.11; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS; SOURCE 3 ORGANISM_TAXID: 358; SOURCE 4 GENE: PNCB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NYSGXRC, T1764, KEYWDS 2 PSI, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.SEETHARAMAN,S.SWAMINATHAN,S.K.BURLEY,NEW YORK SGX RESEARCH CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 6 14-FEB-24 1YBE 1 REMARK REVDAT 5 03-FEB-21 1YBE 1 AUTHOR SEQADV REVDAT 4 30-APR-14 1YBE 1 REMARK VERSN REVDAT 3 24-FEB-09 1YBE 1 VERSN REVDAT 2 14-NOV-06 1YBE 1 REMARK REVDAT 1 11-JAN-05 1YBE 0 JRNL AUTH J.SEETHARAMAN,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF A NICOTINATE PHOSPHORIBOSYLTRANSFERASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 228541.840 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 38319 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.200 REMARK 3 FREE R VALUE TEST SET COUNT : 3895 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5565 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 573 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.015 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6586 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 324 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.89000 REMARK 3 B22 (A**2) : 8.10000 REMARK 3 B33 (A**2) : -4.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.32 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.41 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : 0.790 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.270 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.100 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.000 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.960 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 34.32 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : &_1_TOPOLOGY_INFILE_1 REMARK 3 TOPOLOGY FILE 2 : &_1_TOPOLOGY_INFILE_2 REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YBE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1000031340. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796, 0.9792, 0.95 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRANDEIS - B4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CBASS REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39072 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 27.60 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 27.00 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 10.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS-TRIS, PEGMME5000, PEG400, PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 89.88400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.71400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 89.88400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.71400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 GLY A 4 REMARK 465 ASN A 5 REMARK 465 ALA A 6 REMARK 465 SER A 7 REMARK 465 VAL A 17 REMARK 465 HIS A 18 REMARK 465 ASN A 19 REMARK 465 HIS A 20 REMARK 465 THR A 21 REMARK 465 LYS A 383 REMARK 465 THR A 384 REMARK 465 ILE A 385 REMARK 465 ALA A 386 REMARK 465 SER A 387 REMARK 465 HIS A 434 REMARK 465 LYS A 435 REMARK 465 GLU A 436 REMARK 465 GLN A 437 REMARK 465 LYS A 438 REMARK 465 VAL A 439 REMARK 465 LEU A 440 REMARK 465 VAL A 441 REMARK 465 GLU A 442 REMARK 465 GLY A 443 REMARK 465 HIS A 444 REMARK 465 HIS A 445 REMARK 465 HIS A 446 REMARK 465 HIS A 447 REMARK 465 HIS A 448 REMARK 465 HIS A 449 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 GLY B 4 REMARK 465 ASN B 5 REMARK 465 ALA B 6 REMARK 465 SER B 7 REMARK 465 VAL B 17 REMARK 465 HIS B 18 REMARK 465 ASN B 19 REMARK 465 HIS B 20 REMARK 465 THR B 21 REMARK 465 LYS B 383 REMARK 465 THR B 384 REMARK 465 ILE B 385 REMARK 465 ALA B 386 REMARK 465 SER B 387 REMARK 465 HIS B 434 REMARK 465 LYS B 435 REMARK 465 GLU B 436 REMARK 465 GLN B 437 REMARK 465 LYS B 438 REMARK 465 VAL B 439 REMARK 465 LEU B 440 REMARK 465 VAL B 441 REMARK 465 GLU B 442 REMARK 465 GLY B 443 REMARK 465 HIS B 444 REMARK 465 HIS B 445 REMARK 465 HIS B 446 REMARK 465 HIS B 447 REMARK 465 HIS B 448 REMARK 465 HIS B 449 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 8 CG SD CE REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 TRP A 22 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 22 CZ3 CH2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 ARG A 66 CG CD NE CZ NH1 NH2 REMARK 470 SER A 117 OG REMARK 470 PHE A 127 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 129 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 165 CG CD NE CZ NH1 NH2 REMARK 470 SER A 166 OG REMARK 470 LEU A 167 CG CD1 CD2 REMARK 470 TYR A 169 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE A 170 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR A 171 OG1 CG2 REMARK 470 THR A 371 OG1 CG2 REMARK 470 LEU A 388 CG CD1 CD2 REMARK 470 LYS A 389 CG CD CE NZ REMARK 470 LEU A 408 CG CD1 CD2 REMARK 470 GLU A 432 CG CD OE1 OE2 REMARK 470 ASP A 433 CG OD1 OD2 REMARK 470 MET B 8 CG SD CE REMARK 470 LYS B 10 CG CD CE NZ REMARK 470 TRP B 22 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 22 CZ3 CH2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 ARG B 66 CG CD NE CZ NH1 NH2 REMARK 470 SER B 117 OG REMARK 470 PHE B 127 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 129 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 165 CG CD NE CZ NH1 NH2 REMARK 470 SER B 166 OG REMARK 470 LEU B 167 CG CD1 CD2 REMARK 470 TYR B 169 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE B 170 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR B 171 OG1 CG2 REMARK 470 THR B 371 OG1 CG2 REMARK 470 LEU B 388 CG CD1 CD2 REMARK 470 LYS B 389 CG CD CE NZ REMARK 470 LEU B 408 CG CD1 CD2 REMARK 470 GLU B 432 CG CD OE1 OE2 REMARK 470 ASP B 433 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 289 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 15 6.36 -64.46 REMARK 500 LYS A 23 -168.04 -115.90 REMARK 500 VAL A 65 108.75 68.03 REMARK 500 ARG A 66 -176.52 -50.67 REMARK 500 LEU A 67 -30.60 -139.92 REMARK 500 PHE A 101 -66.99 -102.23 REMARK 500 TYR A 102 55.76 -112.00 REMARK 500 ARG A 129 98.65 -164.89 REMARK 500 LEU A 167 139.16 -34.13 REMARK 500 SER A 208 158.48 170.22 REMARK 500 THR A 246 -84.60 -127.89 REMARK 500 SER A 344 -108.10 -130.80 REMARK 500 ASP A 345 -161.24 51.01 REMARK 500 ASN A 375 67.39 -160.74 REMARK 500 ALA A 378 -74.55 -29.39 REMARK 500 PRO A 390 -79.87 -81.23 REMARK 500 ILE A 391 96.54 81.45 REMARK 500 SER A 409 -162.82 -60.35 REMARK 500 PRO A 412 -33.41 -38.33 REMARK 500 ASP A 418 111.60 -37.31 REMARK 500 ARG B 61 39.88 -66.33 REMARK 500 VAL B 65 103.28 73.67 REMARK 500 ARG B 84 5.12 -69.51 REMARK 500 PHE B 101 -134.87 -99.02 REMARK 500 TYR B 102 55.94 -52.12 REMARK 500 GLN B 106 67.72 24.49 REMARK 500 PRO B 122 -170.80 -66.17 REMARK 500 ARG B 129 134.21 -172.39 REMARK 500 LEU B 167 -75.75 -88.90 REMARK 500 TYR B 169 -79.17 -13.79 REMARK 500 LEU B 193 75.83 -112.23 REMARK 500 PHE B 201 28.11 -143.66 REMARK 500 THR B 246 -107.07 -132.36 REMARK 500 ALA B 256 -64.86 -92.18 REMARK 500 GLN B 260 -62.35 -124.29 REMARK 500 LEU B 288 76.78 -117.80 REMARK 500 ALA B 291 -60.30 -28.53 REMARK 500 ASN B 300 -124.35 -97.46 REMARK 500 ALA B 301 118.34 65.41 REMARK 500 PRO B 313 106.12 -59.35 REMARK 500 PRO B 318 -70.75 -40.63 REMARK 500 GLU B 360 141.83 -38.31 REMARK 500 ASN B 375 61.83 -156.04 REMARK 500 ALA B 378 -84.04 -0.49 REMARK 500 CYS B 395 52.13 -158.19 REMARK 500 SER B 398 -61.09 -94.21 REMARK 500 ASN B 401 -16.49 58.25 REMARK 500 SER B 409 -158.06 -64.34 REMARK 500 ASP B 410 45.06 -100.87 REMARK 500 ASN B 411 82.57 -179.44 REMARK 500 REMARK 500 THIS ENTRY HAS 53 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-T1764 RELATED DB: TARGETDB DBREF 1YBE A 8 441 UNP Q8UIS9 PNCB_AGRT5 1 434 DBREF 1YBE B 8 441 UNP Q8UIS9 PNCB_AGRT5 1 434 SEQADV 1YBE MET A 1 UNP Q8UIS9 CLONING ARTIFACT SEQADV 1YBE SER A 2 UNP Q8UIS9 CLONING ARTIFACT SEQADV 1YBE LEU A 3 UNP Q8UIS9 CLONING ARTIFACT SEQADV 1YBE GLY A 4 UNP Q8UIS9 CLONING ARTIFACT SEQADV 1YBE ASN A 5 UNP Q8UIS9 CLONING ARTIFACT SEQADV 1YBE ALA A 6 UNP Q8UIS9 CLONING ARTIFACT SEQADV 1YBE SER A 7 UNP Q8UIS9 CLONING ARTIFACT SEQADV 1YBE GLU A 442 UNP Q8UIS9 EXPRESSION TAG SEQADV 1YBE GLY A 443 UNP Q8UIS9 EXPRESSION TAG SEQADV 1YBE HIS A 444 UNP Q8UIS9 EXPRESSION TAG SEQADV 1YBE HIS A 445 UNP Q8UIS9 EXPRESSION TAG SEQADV 1YBE HIS A 446 UNP Q8UIS9 EXPRESSION TAG SEQADV 1YBE HIS A 447 UNP Q8UIS9 EXPRESSION TAG SEQADV 1YBE HIS A 448 UNP Q8UIS9 EXPRESSION TAG SEQADV 1YBE HIS A 449 UNP Q8UIS9 EXPRESSION TAG SEQADV 1YBE MET B 1 UNP Q8UIS9 CLONING ARTIFACT SEQADV 1YBE SER B 2 UNP Q8UIS9 CLONING ARTIFACT SEQADV 1YBE LEU B 3 UNP Q8UIS9 CLONING ARTIFACT SEQADV 1YBE GLY B 4 UNP Q8UIS9 CLONING ARTIFACT SEQADV 1YBE ASN B 5 UNP Q8UIS9 CLONING ARTIFACT SEQADV 1YBE ALA B 6 UNP Q8UIS9 CLONING ARTIFACT SEQADV 1YBE SER B 7 UNP Q8UIS9 CLONING ARTIFACT SEQADV 1YBE GLU B 442 UNP Q8UIS9 EXPRESSION TAG SEQADV 1YBE GLY B 443 UNP Q8UIS9 EXPRESSION TAG SEQADV 1YBE HIS B 444 UNP Q8UIS9 EXPRESSION TAG SEQADV 1YBE HIS B 445 UNP Q8UIS9 EXPRESSION TAG SEQADV 1YBE HIS B 446 UNP Q8UIS9 EXPRESSION TAG SEQADV 1YBE HIS B 447 UNP Q8UIS9 EXPRESSION TAG SEQADV 1YBE HIS B 448 UNP Q8UIS9 EXPRESSION TAG SEQADV 1YBE HIS B 449 UNP Q8UIS9 EXPRESSION TAG SEQRES 1 A 449 MET SER LEU GLY ASN ALA SER MET THR LYS THR ASP ILE SEQRES 2 A 449 ALA THR ARG VAL HIS ASN HIS THR TRP LYS LEU ASP PRO SEQRES 3 A 449 ILE VAL ARG SER LEU ILE ASP THR ASP PHE TYR LYS LEU SEQRES 4 A 449 LEU MET LEU GLN MET ILE TRP LYS LEU TYR PRO GLU VAL SEQRES 5 A 449 ASP ALA THR PHE SER LEU ILE ASN ARG THR LYS THR VAL SEQRES 6 A 449 ARG LEU ALA GLU GLU ILE ASP GLU MET GLU LEU ARG GLU SEQRES 7 A 449 GLN LEU ASP HIS ALA ARG THR LEU ARG LEU SER LYS LYS SEQRES 8 A 449 GLU ASN ILE TRP LEU ALA GLY ASN THR PHE TYR GLY ARG SEQRES 9 A 449 SER GLN ILE PHE GLU PRO GLU PHE LEU SER TRP LEU SER SEQRES 10 A 449 SER TYR GLN LEU PRO GLU TYR GLU LEU PHE LYS ARG ASP SEQRES 11 A 449 GLY GLN TYR GLU LEU ASN PHE HIS GLY ARG TRP MET ASP SEQRES 12 A 449 THR THR LEU TRP GLU ILE PRO ALA LEU SER ILE ILE ASN SEQRES 13 A 449 GLU LEU ARG SER ARG SER ALA MET ARG SER LEU GLY TYR SEQRES 14 A 449 PHE THR LEU ASP VAL LEU TYR ALA ARG ALA LYS ALA LYS SEQRES 15 A 449 MET TRP GLU LYS VAL GLU ARG LEU ARG GLU LEU PRO GLY SEQRES 16 A 449 LEU ARG ILE SER ASP PHE GLY THR ARG ARG ARG HIS SER SEQRES 17 A 449 PHE LEU TRP GLN ARG TRP CYS VAL GLU ALA LEU LYS GLU SEQRES 18 A 449 GLY ILE GLY PRO ALA PHE THR GLY THR SER ASN VAL LEU SEQRES 19 A 449 LEU ALA MET ASP SER ASP LEU GLU ALA VAL GLY THR ASN SEQRES 20 A 449 ALA HIS GLU LEU PRO MET VAL VAL ALA ALA LEU ALA GLN SEQRES 21 A 449 THR ASN GLU GLU LEU ALA ALA ALA PRO TYR GLN VAL LEU SEQRES 22 A 449 LYS ASP TRP ASN ARG LEU TYR GLY GLY ASN LEU LEU ILE SEQRES 23 A 449 VAL LEU PRO ASP ALA PHE GLY THR ALA ALA PHE LEU ARG SEQRES 24 A 449 ASN ALA PRO GLU TRP VAL ALA ASP TRP THR GLY PHE ARG SEQRES 25 A 449 PRO ASP SER ALA PRO PRO ILE GLU GLY GLY GLU LYS ILE SEQRES 26 A 449 ILE GLU TRP TRP ARG LYS MET GLY ARG ASP PRO ARG THR SEQRES 27 A 449 LYS MET LEU ILE PHE SER ASP GLY LEU ASP VAL ASP ALA SEQRES 28 A 449 ILE VAL ASP THR TYR ARG HIS PHE GLU GLY ARG VAL ARG SEQRES 29 A 449 MET SER PHE GLY TRP GLY THR ASN LEU THR ASN ASP PHE SEQRES 30 A 449 ALA GLY CYS ALA PRO LYS THR ILE ALA SER LEU LYS PRO SEQRES 31 A 449 ILE SER ILE VAL CYS LYS VAL SER ASP ALA ASN GLY ARG SEQRES 32 A 449 PRO ALA VAL LYS LEU SER ASP ASN PRO GLN LYS ALA THR SEQRES 33 A 449 GLY ASP PRO ALA GLU VAL GLU ARG TYR LEU LYS PHE PHE SEQRES 34 A 449 GLY GLU GLU ASP HIS LYS GLU GLN LYS VAL LEU VAL GLU SEQRES 35 A 449 GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 449 MET SER LEU GLY ASN ALA SER MET THR LYS THR ASP ILE SEQRES 2 B 449 ALA THR ARG VAL HIS ASN HIS THR TRP LYS LEU ASP PRO SEQRES 3 B 449 ILE VAL ARG SER LEU ILE ASP THR ASP PHE TYR LYS LEU SEQRES 4 B 449 LEU MET LEU GLN MET ILE TRP LYS LEU TYR PRO GLU VAL SEQRES 5 B 449 ASP ALA THR PHE SER LEU ILE ASN ARG THR LYS THR VAL SEQRES 6 B 449 ARG LEU ALA GLU GLU ILE ASP GLU MET GLU LEU ARG GLU SEQRES 7 B 449 GLN LEU ASP HIS ALA ARG THR LEU ARG LEU SER LYS LYS SEQRES 8 B 449 GLU ASN ILE TRP LEU ALA GLY ASN THR PHE TYR GLY ARG SEQRES 9 B 449 SER GLN ILE PHE GLU PRO GLU PHE LEU SER TRP LEU SER SEQRES 10 B 449 SER TYR GLN LEU PRO GLU TYR GLU LEU PHE LYS ARG ASP SEQRES 11 B 449 GLY GLN TYR GLU LEU ASN PHE HIS GLY ARG TRP MET ASP SEQRES 12 B 449 THR THR LEU TRP GLU ILE PRO ALA LEU SER ILE ILE ASN SEQRES 13 B 449 GLU LEU ARG SER ARG SER ALA MET ARG SER LEU GLY TYR SEQRES 14 B 449 PHE THR LEU ASP VAL LEU TYR ALA ARG ALA LYS ALA LYS SEQRES 15 B 449 MET TRP GLU LYS VAL GLU ARG LEU ARG GLU LEU PRO GLY SEQRES 16 B 449 LEU ARG ILE SER ASP PHE GLY THR ARG ARG ARG HIS SER SEQRES 17 B 449 PHE LEU TRP GLN ARG TRP CYS VAL GLU ALA LEU LYS GLU SEQRES 18 B 449 GLY ILE GLY PRO ALA PHE THR GLY THR SER ASN VAL LEU SEQRES 19 B 449 LEU ALA MET ASP SER ASP LEU GLU ALA VAL GLY THR ASN SEQRES 20 B 449 ALA HIS GLU LEU PRO MET VAL VAL ALA ALA LEU ALA GLN SEQRES 21 B 449 THR ASN GLU GLU LEU ALA ALA ALA PRO TYR GLN VAL LEU SEQRES 22 B 449 LYS ASP TRP ASN ARG LEU TYR GLY GLY ASN LEU LEU ILE SEQRES 23 B 449 VAL LEU PRO ASP ALA PHE GLY THR ALA ALA PHE LEU ARG SEQRES 24 B 449 ASN ALA PRO GLU TRP VAL ALA ASP TRP THR GLY PHE ARG SEQRES 25 B 449 PRO ASP SER ALA PRO PRO ILE GLU GLY GLY GLU LYS ILE SEQRES 26 B 449 ILE GLU TRP TRP ARG LYS MET GLY ARG ASP PRO ARG THR SEQRES 27 B 449 LYS MET LEU ILE PHE SER ASP GLY LEU ASP VAL ASP ALA SEQRES 28 B 449 ILE VAL ASP THR TYR ARG HIS PHE GLU GLY ARG VAL ARG SEQRES 29 B 449 MET SER PHE GLY TRP GLY THR ASN LEU THR ASN ASP PHE SEQRES 30 B 449 ALA GLY CYS ALA PRO LYS THR ILE ALA SER LEU LYS PRO SEQRES 31 B 449 ILE SER ILE VAL CYS LYS VAL SER ASP ALA ASN GLY ARG SEQRES 32 B 449 PRO ALA VAL LYS LEU SER ASP ASN PRO GLN LYS ALA THR SEQRES 33 B 449 GLY ASP PRO ALA GLU VAL GLU ARG TYR LEU LYS PHE PHE SEQRES 34 B 449 GLY GLU GLU ASP HIS LYS GLU GLN LYS VAL LEU VAL GLU SEQRES 35 B 449 GLY HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *324(H2 O) HELIX 1 1 MET A 8 THR A 15 1 8 HELIX 2 2 ASP A 35 TYR A 49 1 15 HELIX 3 3 ASP A 72 ARG A 84 1 13 HELIX 4 4 SER A 89 ASN A 99 1 11 HELIX 5 5 GLU A 109 SER A 118 1 10 HELIX 6 6 ARG A 140 THR A 145 1 6 HELIX 7 7 TRP A 147 ARG A 165 1 19 HELIX 8 8 GLY A 168 ARG A 191 1 24 HELIX 9 9 SER A 208 GLY A 224 1 17 HELIX 10 10 ASN A 232 ASP A 240 1 9 HELIX 11 11 HIS A 249 ALA A 259 1 11 HELIX 12 12 THR A 261 TYR A 280 1 20 HELIX 13 13 GLY A 281 LEU A 284 5 4 HELIX 14 14 GLY A 293 ASN A 300 1 8 HELIX 15 15 PRO A 302 TRP A 308 5 7 HELIX 16 16 PRO A 317 MET A 332 1 16 HELIX 17 17 ASP A 335 THR A 338 5 4 HELIX 18 18 ASP A 348 GLU A 360 1 13 HELIX 19 19 GLY A 370 ASN A 375 1 6 HELIX 20 20 ASN A 411 ALA A 415 5 5 HELIX 21 21 ASP A 418 GLY A 430 1 13 HELIX 22 22 MET B 8 THR B 15 1 8 HELIX 23 23 ASP B 35 TYR B 49 1 15 HELIX 24 24 ARG B 66 ILE B 71 1 6 HELIX 25 25 ASP B 72 ARG B 84 1 13 HELIX 26 26 SER B 89 ASN B 99 1 11 HELIX 27 27 GLU B 109 SER B 117 1 9 HELIX 28 28 ARG B 140 THR B 145 1 6 HELIX 29 29 TRP B 147 ARG B 165 1 19 HELIX 30 30 GLY B 168 ARG B 191 1 24 HELIX 31 31 SER B 208 GLY B 224 1 17 HELIX 32 32 ASN B 232 SER B 239 1 8 HELIX 33 33 HIS B 249 LEU B 258 1 10 HELIX 34 34 THR B 261 ALA B 267 1 7 HELIX 35 35 ALA B 267 TYR B 280 1 14 HELIX 36 36 GLY B 281 LEU B 284 5 4 HELIX 37 37 LEU B 288 PHE B 292 5 5 HELIX 38 38 GLY B 293 ASN B 300 1 8 HELIX 39 39 PRO B 302 TRP B 308 5 7 HELIX 40 40 PRO B 317 MET B 332 1 16 HELIX 41 41 ASP B 335 THR B 338 5 4 HELIX 42 42 ASP B 348 GLU B 360 1 13 HELIX 43 43 GLY B 370 ASN B 375 1 6 HELIX 44 44 ASN B 411 ALA B 415 5 5 HELIX 45 45 ASP B 418 GLY B 430 1 13 SHEET 1 A 5 GLU A 125 LYS A 128 0 SHEET 2 A 5 TYR A 133 PHE A 137 -1 O ASN A 136 N GLU A 125 SHEET 3 A 5 ALA A 54 ASN A 60 -1 N LEU A 58 O LEU A 135 SHEET 4 A 5 ILE A 393 ALA A 400 -1 O VAL A 394 N ILE A 59 SHEET 5 A 5 ARG A 403 PRO A 404 -1 O ARG A 403 N ALA A 400 SHEET 1 B 6 PHE A 227 THR A 230 0 SHEET 2 B 6 ILE A 198 ASP A 200 1 N ASP A 200 O GLY A 229 SHEET 3 B 6 ARG A 364 TRP A 369 1 O TRP A 369 N SER A 199 SHEET 4 B 6 MET A 340 PHE A 343 1 N LEU A 341 O ARG A 364 SHEET 5 B 6 GLY A 310 PHE A 311 1 N PHE A 311 O ILE A 342 SHEET 6 B 6 ILE A 286 VAL A 287 1 N VAL A 287 O GLY A 310 SHEET 1 C 4 TYR B 124 ARG B 129 0 SHEET 2 C 4 GLN B 132 PHE B 137 -1 O GLU B 134 N PHE B 127 SHEET 3 C 4 ALA B 54 ASN B 60 -1 N LEU B 58 O LEU B 135 SHEET 4 C 4 ILE B 393 VAL B 394 -1 O VAL B 394 N ILE B 59 SHEET 1 D 5 TYR B 124 ARG B 129 0 SHEET 2 D 5 GLN B 132 PHE B 137 -1 O GLU B 134 N PHE B 127 SHEET 3 D 5 ALA B 54 ASN B 60 -1 N LEU B 58 O LEU B 135 SHEET 4 D 5 VAL B 397 ALA B 400 -1 O SER B 398 N THR B 55 SHEET 5 D 5 ARG B 403 PRO B 404 -1 O ARG B 403 N ALA B 400 SHEET 1 E 6 PHE B 227 THR B 230 0 SHEET 2 E 6 ILE B 198 ASP B 200 1 N ASP B 200 O GLY B 229 SHEET 3 E 6 ARG B 364 TRP B 369 1 O PHE B 367 N SER B 199 SHEET 4 E 6 MET B 340 PHE B 343 1 N LEU B 341 O ARG B 364 SHEET 5 E 6 GLY B 310 PHE B 311 1 N PHE B 311 O MET B 340 SHEET 6 E 6 ILE B 286 VAL B 287 1 N VAL B 287 O GLY B 310 CRYST1 179.768 69.428 87.990 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005563 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014403 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011365 0.00000